Wall clock time and date at job start Mon Mar 30 2020 03:09:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00125 * 2 1 4 4 H 1.48503 * 109.46845 * 269.99927 * 3 2 1 5 5 H 1.48503 * 109.47399 * 29.99417 * 3 2 1 6 6 H 1.48498 * 109.47295 * 150.00023 * 3 2 1 7 7 C 1.37877 * 120.00069 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00146 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99842 * 0.02562 * 7 2 1 10 10 H 1.09007 * 110.81593 * 300.69592 * 9 7 2 11 11 C 1.54818 * 110.92456 * 177.02726 * 9 7 2 12 12 O 1.44298 * 101.32664 * 218.36260 * 11 9 7 13 13 C 1.34938 * 107.70853 * 24.81845 * 12 11 9 14 14 C 1.48007 * 123.08756 * 162.72178 * 13 12 11 15 15 C 1.39526 * 120.11298 * 179.74263 * 14 13 12 16 16 C 1.37981 * 119.97497 * 179.76427 * 15 14 13 17 17 C 1.38277 * 120.19663 * 0.51692 * 16 15 14 18 18 C 1.38801 * 120.22210 * 359.73512 * 17 16 15 19 19 O 1.35908 * 119.98699 * 180.02562 * 18 17 16 20 20 C 1.38505 * 120.02230 * 0.02562 * 18 17 16 21 21 N 1.29627 * 113.83060 * 342.73355 * 13 12 11 22 22 H 0.97000 * 119.99838 * 179.97438 * 1 2 3 23 23 H 1.09002 * 111.04765 * 336.36068 * 11 9 7 24 24 H 1.09000 * 111.04753 * 100.31847 * 11 9 7 25 25 H 1.08006 * 120.01078 * 0.02562 * 15 14 13 26 26 H 1.07996 * 119.90511 * 180.23280 * 16 15 14 27 27 H 1.08008 * 119.88909 * 179.72371 * 17 16 15 28 28 H 0.96697 * 114.00554 * 269.98349 * 19 18 17 29 29 H 1.08006 * 120.10203 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6528 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6066 -2.5743 0.8765 11 6 2.2253 -3.7000 -0.0738 12 8 1.5037 -4.5969 -0.9440 13 6 0.6738 -3.8521 -1.7040 14 6 0.0519 -4.3529 -2.9502 15 6 -0.8020 -3.5305 -3.6859 16 6 -1.3764 -3.9985 -4.8499 17 6 -1.1171 -5.2852 -5.2849 18 6 -0.2731 -6.1122 -4.5566 19 8 -0.0210 -7.3758 -4.9889 20 6 0.3124 -5.6500 -3.3896 21 7 0.4715 -2.6578 -1.2426 22 1 -0.4850 -0.8401 -0.0004 23 1 3.1765 -3.4056 -0.5171 24 1 2.3748 -4.1443 0.9102 25 1 -1.0099 -2.5264 -3.3467 26 1 -2.0342 -3.3597 -5.4204 27 1 -1.5729 -5.6480 -6.1944 28 1 -0.6387 -8.0380 -4.6499 29 1 0.9697 -6.2923 -2.8221 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260448304.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:40 Heat of formation + Delta-G solvation = -30.991553 kcal Electronic energy + Delta-G solvation = -15557.950577 eV Core-core repulsion = 12832.912677 eV Total energy + Delta-G solvation = -2725.037901 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.27967 -39.30401 -36.61130 -33.79282 -32.21535 -31.16178 -29.69090 -28.38735 -24.60922 -23.33200 -22.46326 -21.19817 -19.96525 -17.94866 -17.17102 -16.43926 -15.94863 -15.38666 -15.08534 -14.78250 -14.24165 -13.76408 -13.54315 -13.18892 -12.58709 -12.32875 -12.01868 -11.56379 -11.44554 -11.15231 -10.79424 -10.61607 -10.51876 -10.12028 -9.36354 -9.12265 -8.89718 -8.61364 -8.49464 -7.74793 -6.43448 -4.22026 1.08386 1.38775 3.06260 3.40361 3.43379 3.58558 3.82218 3.96872 4.26020 4.47757 4.84675 5.05664 5.15635 5.43386 5.47828 5.57733 5.76951 5.84404 5.87542 5.99211 6.19020 6.30114 6.48965 6.57686 6.70954 6.84918 6.93861 7.24178 7.63144 7.92885 8.24702 8.62969 8.80652 9.59296 10.98744 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.038690 B = 0.006443 C = 0.005796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.527167 B = 4344.649057 C = 4829.374429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.035 3.965 3 Si 1.073 2.927 4 H -0.287 1.287 5 H -0.282 1.282 6 H -0.288 1.288 7 C -0.605 4.605 8 H 0.057 0.943 9 C 0.139 3.861 10 H 0.054 0.946 11 C 0.032 3.968 12 O -0.363 6.363 13 C 0.270 3.730 14 C 0.004 3.996 15 C -0.081 4.081 16 C -0.109 4.109 17 C -0.139 4.139 18 C 0.093 3.907 19 O -0.499 6.499 20 C -0.117 4.117 21 N -0.471 5.471 22 H 0.282 0.718 23 H 0.073 0.927 24 H 0.091 0.909 25 H 0.143 0.857 26 H 0.132 0.868 27 H 0.127 0.873 28 H 0.387 0.613 29 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.196 -10.605 -7.322 13.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.174 4.174 3 Si 0.901 3.099 4 H -0.213 1.213 5 H -0.208 1.208 6 H -0.214 1.214 7 C -0.643 4.643 8 H 0.075 0.925 9 C 0.033 3.967 10 H 0.071 0.929 11 C -0.045 4.045 12 O -0.269 6.269 13 C 0.044 3.956 14 C 0.002 3.998 15 C -0.101 4.101 16 C -0.127 4.127 17 C -0.159 4.159 18 C 0.049 3.951 19 O -0.309 6.309 20 C -0.138 4.138 21 N -0.202 5.202 22 H 0.093 0.907 23 H 0.092 0.908 24 H 0.109 0.891 25 H 0.161 0.839 26 H 0.149 0.851 27 H 0.145 0.855 28 H 0.242 0.758 29 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -2.311 -8.081 -7.637 11.356 hybrid contribution 0.471 -2.413 0.650 2.543 sum -1.840 -10.494 -6.987 12.741 Atomic orbital electron populations 1.70612 1.06865 1.31980 1.42358 1.25829 0.96546 1.02495 0.92564 0.83497 0.74633 0.74893 0.76884 1.21319 1.20803 1.21419 1.21646 0.93519 0.90034 1.59129 0.92495 1.21418 0.90546 0.95096 0.89646 0.92885 1.24600 0.96590 0.90358 0.92913 1.86815 1.53413 1.36090 1.50609 1.23187 0.92592 0.87853 0.91962 1.17730 0.97453 0.93374 0.91223 1.21395 0.94506 1.00539 0.93651 1.20969 1.00136 0.95304 0.96293 1.21474 0.98696 0.95021 1.00661 1.18242 0.97568 0.85947 0.93342 1.84837 1.57443 1.15391 1.73191 1.21528 1.00634 0.95945 0.95679 1.75310 1.20855 1.12516 1.11567 0.90679 0.90846 0.89064 0.83879 0.85059 0.85478 0.75782 0.84699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.85 13.58 55.43 0.75 -26.10 15 2 C 0.04 1.01 5.43 -17.82 -0.10 0.91 15 3 Si 1.07 25.08 29.90 -169.99 -5.08 20.00 15 4 H -0.29 -6.55 7.11 56.52 0.40 -6.15 15 5 H -0.28 -6.52 7.11 56.52 0.40 -6.12 15 6 H -0.29 -6.36 7.11 56.52 0.40 -5.95 15 7 C -0.60 -17.09 8.78 -34.44 -0.30 -17.39 15 8 H 0.06 1.57 7.63 -52.49 -0.40 1.17 15 9 C 0.14 3.64 3.08 -67.53 -0.21 3.43 15 10 H 0.05 1.45 8.01 -51.92 -0.42 1.04 15 11 C 0.03 0.70 7.71 38.12 0.29 0.99 15 12 O -0.36 -7.92 10.68 -16.53 -0.18 -8.10 15 13 C 0.27 6.03 7.59 -14.48 -0.11 5.92 15 14 C 0.00 0.07 5.87 -104.98 -0.62 -0.55 15 15 C -0.08 -1.38 9.63 -39.20 -0.38 -1.76 15 16 C -0.11 -1.46 10.03 -39.66 -0.40 -1.86 15 17 C -0.14 -1.74 9.98 -39.36 -0.39 -2.13 15 18 C 0.09 1.27 6.70 -39.27 -0.26 1.01 15 19 O -0.50 -5.81 13.50 -19.45 -0.26 -6.07 15 20 C -0.12 -1.87 9.61 -39.05 -0.38 -2.25 15 21 N -0.47 -12.05 9.83 -52.38 -0.51 -12.57 15 22 H 0.28 8.64 6.63 -40.82 -0.27 8.37 15 23 H 0.07 1.59 7.79 -51.93 -0.40 1.19 15 24 H 0.09 1.73 8.14 -51.93 -0.42 1.31 15 25 H 0.14 2.65 7.70 -52.48 -0.40 2.25 15 26 H 0.13 1.39 8.06 -52.49 -0.42 0.97 15 27 H 0.13 1.25 8.06 -52.48 -0.42 0.83 15 28 H 0.39 2.51 9.06 45.56 0.41 2.92 15 29 H 0.14 2.10 7.77 -52.48 -0.41 1.69 15 LS Contribution 262.08 15.07 3.95 3.95 Total: -1.00 -32.90 262.08 -6.14 -39.04 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -1.95 Total: 3.51 kcal Atomic # 6 Polarization: -10.82 SS G_CDS: -2.85 Total: -13.66 kcal Atomic # 7 Polarization: -38.90 SS G_CDS: 0.24 Total: -38.66 kcal Atomic # 8 Polarization: -13.73 SS G_CDS: -0.44 Total: -14.17 kcal Atomic # 14 Polarization: 25.08 SS G_CDS: -5.08 Total: 20.00 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -32.90 -6.14 -39.04 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260448304.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.049 kcal (2) G-P(sol) polarization free energy of solvation -32.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds