Wall clock time and date at job start Mon Mar 30 2020 03:09:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00125 * 2 1 4 4 H 1.48503 * 109.46845 * 269.99927 * 3 2 1 5 5 H 1.48503 * 109.47399 * 29.99417 * 3 2 1 6 6 H 1.48498 * 109.47295 * 150.00023 * 3 2 1 7 7 C 1.37877 * 120.00069 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00146 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99842 * 0.02562 * 7 2 1 10 10 H 1.09007 * 110.81593 * 300.69592 * 9 7 2 11 11 C 1.54818 * 110.92456 * 177.02726 * 9 7 2 12 12 O 1.44298 * 101.32664 * 218.36260 * 11 9 7 13 13 C 1.34938 * 107.70853 * 24.81845 * 12 11 9 14 14 C 1.48007 * 123.08756 * 162.72178 * 13 12 11 15 15 C 1.39526 * 120.11298 * 179.74263 * 14 13 12 16 16 C 1.37981 * 119.97497 * 179.76427 * 15 14 13 17 17 C 1.38277 * 120.19663 * 0.51692 * 16 15 14 18 18 C 1.38801 * 120.22210 * 359.73512 * 17 16 15 19 19 O 1.35908 * 119.98699 * 180.02562 * 18 17 16 20 20 C 1.38505 * 120.02230 * 0.02562 * 18 17 16 21 21 N 1.29627 * 113.83060 * 342.73355 * 13 12 11 22 22 H 0.97000 * 119.99838 * 179.97438 * 1 2 3 23 23 H 1.09002 * 111.04765 * 336.36068 * 11 9 7 24 24 H 1.09000 * 111.04753 * 100.31847 * 11 9 7 25 25 H 1.08006 * 120.01078 * 0.02562 * 15 14 13 26 26 H 1.07996 * 119.90511 * 180.23280 * 16 15 14 27 27 H 1.08008 * 119.88909 * 179.72371 * 17 16 15 28 28 H 0.96697 * 114.00554 * 269.98349 * 19 18 17 29 29 H 1.08006 * 120.10203 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6528 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6066 -2.5743 0.8765 11 6 2.2253 -3.7000 -0.0738 12 8 1.5037 -4.5969 -0.9440 13 6 0.6738 -3.8521 -1.7040 14 6 0.0519 -4.3529 -2.9502 15 6 -0.8020 -3.5305 -3.6859 16 6 -1.3764 -3.9985 -4.8499 17 6 -1.1171 -5.2852 -5.2849 18 6 -0.2731 -6.1122 -4.5566 19 8 -0.0210 -7.3758 -4.9889 20 6 0.3124 -5.6500 -3.3896 21 7 0.4715 -2.6578 -1.2426 22 1 -0.4850 -0.8401 -0.0004 23 1 3.1765 -3.4056 -0.5171 24 1 2.3748 -4.1443 0.9102 25 1 -1.0099 -2.5264 -3.3467 26 1 -2.0342 -3.3597 -5.4204 27 1 -1.5729 -5.6480 -6.1944 28 1 -0.6387 -8.0380 -4.6499 29 1 0.9697 -6.2923 -2.8221 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260448304.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:40 Heat of formation + Delta-G solvation = -57.817926 kcal Electronic energy + Delta-G solvation = -15559.113856 eV Core-core repulsion = 12832.912677 eV Total energy + Delta-G solvation = -2726.201180 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.00219 -40.49396 -37.67349 -35.81925 -33.90756 -32.75159 -31.00352 -29.98016 -26.66870 -24.73066 -23.80207 -22.95768 -21.42011 -19.40592 -18.99186 -17.90418 -17.34865 -16.75888 -16.56527 -16.14179 -15.74589 -15.58526 -15.21993 -14.71077 -14.15205 -13.75828 -13.60510 -13.11161 -12.80795 -12.76548 -12.57522 -12.48718 -11.92643 -11.56663 -11.25773 -10.93480 -10.65535 -10.45006 -9.80472 -9.42446 -8.68966 -6.47731 -0.20518 0.24812 1.49813 1.51778 1.60614 1.77429 2.22341 2.53573 2.70596 2.98120 3.22269 3.50163 3.91416 3.92591 4.08795 4.13304 4.20909 4.37792 4.44207 4.54950 4.79400 4.89713 4.97708 5.21144 5.34252 5.41555 5.51703 5.76372 5.82756 6.03435 6.48555 6.84384 6.88080 7.43785 8.72473 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.038690 B = 0.006443 C = 0.005796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.527167 B = 4344.649057 C = 4829.374429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.017 4.017 3 Si 1.122 2.878 4 H -0.278 1.278 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.619 4.619 8 H 0.058 0.942 9 C 0.128 3.872 10 H 0.025 0.975 11 C 0.039 3.961 12 O -0.359 6.359 13 C 0.286 3.714 14 C -0.033 4.033 15 C -0.097 4.097 16 C -0.097 4.097 17 C -0.118 4.118 18 C 0.106 3.894 19 O -0.501 6.501 20 C -0.121 4.121 21 N -0.524 5.524 22 H 0.266 0.734 23 H 0.076 0.924 24 H 0.122 0.878 25 H 0.116 0.884 26 H 0.164 0.836 27 H 0.168 0.832 28 H 0.413 0.587 29 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.026 -11.983 -9.459 15.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.219 4.219 3 Si 0.943 3.057 4 H -0.204 1.204 5 H -0.205 1.205 6 H -0.190 1.190 7 C -0.657 4.657 8 H 0.076 0.924 9 C 0.021 3.979 10 H 0.043 0.957 11 C -0.037 4.037 12 O -0.265 6.265 13 C 0.061 3.939 14 C -0.034 4.034 15 C -0.117 4.117 16 C -0.115 4.115 17 C -0.137 4.137 18 C 0.061 3.939 19 O -0.315 6.315 20 C -0.141 4.141 21 N -0.256 5.256 22 H 0.076 0.924 23 H 0.095 0.905 24 H 0.140 0.860 25 H 0.134 0.866 26 H 0.182 0.818 27 H 0.185 0.815 28 H 0.272 0.728 29 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -2.142 -9.512 -9.768 13.802 hybrid contribution 0.364 -2.226 1.187 2.549 sum -1.779 -11.738 -8.581 14.648 Atomic orbital electron populations 1.70729 1.07918 1.31025 1.45005 1.27369 0.96617 1.06412 0.91522 0.82888 0.74322 0.70949 0.77529 1.20410 1.20455 1.19044 1.22003 0.93799 0.91405 1.58493 0.92416 1.21318 0.91074 0.96131 0.89391 0.95730 1.24585 0.95528 0.89116 0.94487 1.86811 1.53241 1.35935 1.50493 1.23939 0.90718 0.87010 0.92247 1.17785 0.99726 0.95192 0.90745 1.21331 0.95502 0.99518 0.95355 1.21279 0.99376 0.96185 0.94675 1.21887 0.96886 0.93857 1.01081 1.18249 0.96518 0.87051 0.92089 1.84785 1.58679 1.15009 1.72980 1.21554 1.01040 0.94686 0.96830 1.75247 1.23505 1.14695 1.12187 0.92361 0.90536 0.86047 0.86621 0.81840 0.81494 0.72751 0.84801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -57.60 13.58 21.45 0.29 -57.31 15 2 C -0.02 -0.98 5.43 84.65 0.46 -0.52 15 3 Si 1.12 50.96 29.90 68.60 2.05 53.01 15 4 H -0.28 -12.16 7.11 99.48 0.71 -11.45 15 5 H -0.28 -12.43 7.11 99.48 0.71 -11.72 15 6 H -0.27 -10.99 7.11 99.48 0.71 -10.28 15 7 C -0.62 -35.99 8.78 25.60 0.22 -35.77 15 8 H 0.06 3.24 7.63 -2.91 -0.02 3.22 15 9 C 0.13 6.97 3.08 44.66 0.14 7.10 15 10 H 0.03 1.45 8.01 -2.38 -0.02 1.43 15 11 C 0.04 1.74 7.71 72.60 0.56 2.30 15 12 O -0.36 -15.81 10.68 -82.08 -0.88 -16.69 15 13 C 0.29 13.18 7.59 87.61 0.67 13.84 15 14 C -0.03 -1.24 5.87 -20.09 -0.12 -1.35 15 15 C -0.10 -3.30 9.63 22.52 0.22 -3.08 15 16 C -0.10 -2.33 10.03 22.22 0.22 -2.10 15 17 C -0.12 -2.41 9.98 22.41 0.22 -2.19 15 18 C 0.11 2.51 6.70 22.47 0.15 2.66 15 19 O -0.50 -9.48 13.50 -92.52 -1.25 -10.73 15 20 C -0.12 -3.67 9.61 22.61 0.22 -3.45 15 21 N -0.52 -28.16 9.83 -434.22 -4.27 -32.43 15 22 H 0.27 17.30 6.63 -92.71 -0.61 16.69 15 23 H 0.08 3.33 7.79 -2.39 -0.02 3.31 15 24 H 0.12 4.56 8.14 -2.39 -0.02 4.54 15 25 H 0.12 4.53 7.70 -2.91 -0.02 4.51 15 26 H 0.16 2.83 8.06 -2.91 -0.02 2.80 15 27 H 0.17 2.19 8.06 -2.91 -0.02 2.17 15 28 H 0.41 3.44 9.06 -74.06 -0.67 2.77 15 29 H 0.13 4.01 7.77 -2.91 -0.02 3.99 15 Total: -1.00 -74.29 262.08 -0.43 -74.71 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: 0.66 Total: 11.98 kcal Atomic # 6 Polarization: -25.52 SS G_CDS: 2.96 Total: -22.56 kcal Atomic # 7 Polarization: -85.76 SS G_CDS: -3.98 Total: -89.73 kcal Atomic # 8 Polarization: -25.29 SS G_CDS: -2.13 Total: -27.42 kcal Atomic # 14 Polarization: 50.96 SS G_CDS: 2.05 Total: 53.01 kcal Total: -74.29 -0.43 -74.71 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260448304.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.897 kcal (2) G-P(sol) polarization free energy of solvation -74.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds