Wall clock time and date at job start Mon Mar 30 2020 03:11:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30597 * 1 3 3 Si 1.86803 * 119.99951 * 2 1 4 4 H 1.48498 * 109.46611 * 95.01468 * 3 2 1 5 5 H 1.48499 * 109.47147 * 215.01470 * 3 2 1 6 6 H 1.48502 * 109.47075 * 335.01759 * 3 2 1 7 7 C 1.40211 * 120.00234 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00696 * 173.88625 * 7 2 1 9 9 C 1.41262 * 120.00062 * 353.88746 * 7 2 1 10 10 N 1.30637 * 123.22327 * 5.95109 * 9 7 2 11 11 C 1.47582 * 108.33770 * 180.59195 * 10 9 7 12 12 C 1.54790 * 102.10619 * 14.98957 * 11 10 9 13 13 H 1.09001 * 111.01618 * 94.38854 * 12 11 10 14 14 C 1.50695 * 111.01459 * 218.27201 * 12 11 10 15 15 C 1.38289 * 119.97397 * 85.00170 * 14 12 11 16 16 C 1.38236 * 120.11443 * 179.97438 * 15 14 12 17 17 C 1.38165 * 120.05998 * 359.95864 * 16 15 14 18 18 C 1.38719 * 119.93834 * 0.02562 * 17 16 15 19 19 O 1.35901 * 120.05316 * 180.02562 * 18 17 16 20 20 C 1.38127 * 119.97161 * 264.72477 * 14 12 11 21 21 O 1.35191 * 123.22797 * 185.65768 * 9 7 2 22 22 H 0.97001 * 120.00623 * 359.97438 * 1 2 3 23 23 H 1.09008 * 110.90177 * 133.19201 * 11 10 9 24 24 H 1.08997 * 110.90286 * 256.75392 * 11 10 9 25 25 H 1.08000 * 119.93732 * 359.97438 * 15 14 12 26 26 H 1.08004 * 119.97148 * 179.97438 * 16 15 14 27 27 H 1.07995 * 120.03219 * 180.02562 * 17 16 15 28 28 H 0.96704 * 113.99606 * 89.99518 * 19 18 17 29 29 H 1.07999 * 120.03061 * 0.02562 * 20 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3060 0.0000 0.0000 3 14 2.2400 1.6178 0.0000 4 1 2.5934 1.9852 1.3947 5 1 3.4805 1.4731 -0.8033 6 1 1.3884 2.6810 -0.5913 7 6 2.0071 -1.2142 -0.0005 8 1 3.0825 -1.2169 -0.1002 9 6 1.3068 -2.4342 0.1292 10 7 0.0029 -2.5134 0.1404 11 6 -0.3748 -3.9306 0.3046 12 6 0.9560 -4.5693 0.7704 13 1 1.0052 -4.6210 1.8581 14 6 1.1445 -5.9331 0.1576 15 6 1.7024 -6.0535 -1.1020 16 6 1.8770 -7.3032 -1.6666 17 6 1.4952 -8.4355 -0.9731 18 6 0.9356 -8.3175 0.2907 19 8 0.5596 -9.4297 0.9752 20 6 0.7650 -7.0622 0.8570 21 8 1.9218 -3.6323 0.2479 22 1 -0.4851 0.8400 0.0004 23 1 -1.1470 -4.0415 1.0660 24 1 -0.7014 -4.3584 -0.6432 25 1 2.0021 -5.1697 -1.6454 26 1 2.3126 -7.3945 -2.6507 27 1 1.6322 -9.4116 -1.4145 28 1 1.2557 -9.8015 1.5342 29 1 0.3331 -6.9680 1.8423 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260459149.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:19 Heat of formation + Delta-G solvation = -31.206573 kcal Electronic energy + Delta-G solvation = -15536.286032 eV Core-core repulsion = 12811.238807 eV Total energy + Delta-G solvation = -2725.047225 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.00246 -38.93228 -36.54017 -33.61142 -31.97212 -31.19557 -29.67029 -28.23901 -25.54925 -22.64940 -22.44216 -20.81280 -20.01787 -17.89476 -16.84323 -16.29611 -15.89586 -15.32983 -15.13504 -14.67369 -14.11983 -13.62339 -13.48823 -12.45047 -12.24598 -12.20184 -11.98169 -11.44204 -11.35683 -11.25699 -11.07865 -10.72451 -10.48437 -10.27222 -10.04958 -9.18100 -8.76687 -8.49100 -7.76756 -7.43050 -6.45181 -4.67256 1.40839 1.45798 3.07210 3.14835 3.18298 3.72088 3.98820 4.11215 4.24290 4.69823 5.04124 5.11424 5.26637 5.43413 5.55529 5.64613 5.80674 5.85460 6.05971 6.10173 6.49158 6.54319 6.60602 6.72647 6.83567 6.91666 6.95714 7.31891 7.66352 7.69904 8.18894 8.74990 8.93655 10.05073 10.46168 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.061696 B = 0.005541 C = 0.005338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 453.728627 B = 5052.328015 C = 5244.622012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.733 5.733 2 C 0.077 3.923 3 Si 0.918 3.082 4 H -0.269 1.269 5 H -0.263 1.263 6 H -0.278 1.278 7 C -0.451 4.451 8 H 0.084 0.916 9 C 0.374 3.626 10 N -0.596 5.596 11 C 0.016 3.984 12 C 0.083 3.917 13 H 0.079 0.921 14 C -0.048 4.048 15 C -0.103 4.103 16 C -0.106 4.106 17 C -0.154 4.154 18 C 0.098 3.902 19 O -0.501 6.501 20 C -0.140 4.140 21 O -0.363 6.363 22 H 0.273 0.727 23 H 0.059 0.941 24 H 0.048 0.952 25 H 0.132 0.868 26 H 0.126 0.874 27 H 0.124 0.876 28 H 0.386 0.614 29 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.535 -11.163 0.460 11.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.358 5.358 2 C -0.147 4.147 3 Si 0.742 3.258 4 H -0.195 1.195 5 H -0.187 1.187 6 H -0.203 1.203 7 C -0.490 4.490 8 H 0.102 0.898 9 C 0.174 3.826 10 N -0.342 5.342 11 C -0.115 4.115 12 C 0.024 3.976 13 H 0.096 0.904 14 C -0.049 4.049 15 C -0.121 4.121 16 C -0.124 4.124 17 C -0.172 4.172 18 C 0.054 3.946 19 O -0.310 6.310 20 C -0.158 4.158 21 O -0.272 6.272 22 H 0.084 0.916 23 H 0.078 0.922 24 H 0.066 0.934 25 H 0.150 0.850 26 H 0.144 0.856 27 H 0.142 0.858 28 H 0.241 0.759 29 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 2.220 -10.616 0.067 10.845 hybrid contribution 1.128 -0.145 0.430 1.216 sum 3.348 -10.761 0.497 11.280 Atomic orbital electron populations 1.70014 1.07026 1.27856 1.30876 1.25748 0.94841 1.00455 0.93648 0.86180 0.80006 0.80325 0.79239 1.19451 1.18701 1.20298 1.18535 0.94415 0.86553 1.49463 0.89788 1.22028 0.87974 0.83614 0.88972 1.76235 1.09187 1.07505 1.41284 1.23855 0.94671 0.94228 0.98702 1.22620 0.91803 0.86393 0.96773 0.90376 1.19715 0.96832 0.93783 0.94527 1.21151 0.98037 0.97909 0.95005 1.21032 0.99653 0.91948 0.99749 1.21331 1.01199 0.99228 0.95486 1.18317 0.98681 0.85698 0.91940 1.84827 1.41714 1.41819 1.62665 1.21132 1.02554 0.91295 1.00860 1.86977 1.39393 1.20170 1.80661 0.91581 0.92222 0.93433 0.84999 0.85649 0.85808 0.75897 0.85484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -20.39 11.76 55.56 0.65 -19.74 15 2 C 0.08 2.03 5.49 -17.34 -0.10 1.94 15 3 Si 0.92 19.16 29.57 -169.99 -5.03 14.14 15 4 H -0.27 -5.52 7.11 56.52 0.40 -5.12 15 5 H -0.26 -5.35 7.11 56.52 0.40 -4.95 15 6 H -0.28 -5.65 7.11 56.52 0.40 -5.24 15 7 C -0.45 -12.54 9.50 -37.69 -0.36 -12.90 15 8 H 0.08 2.20 7.86 -52.49 -0.41 1.78 15 9 C 0.37 10.57 7.42 -16.91 -0.13 10.45 15 10 N -0.60 -17.09 9.71 -59.53 -0.58 -17.66 15 11 C 0.02 0.39 7.66 -2.51 -0.02 0.37 15 12 C 0.08 1.80 3.96 -26.94 -0.11 1.69 15 13 H 0.08 1.60 8.11 -51.93 -0.42 1.18 15 14 C -0.05 -0.88 5.04 -104.65 -0.53 -1.41 15 15 C -0.10 -1.81 9.38 -39.56 -0.37 -2.18 15 16 C -0.11 -1.51 10.04 -39.61 -0.40 -1.91 15 17 C -0.15 -2.07 9.99 -39.43 -0.39 -2.46 15 18 C 0.10 1.39 6.71 -39.21 -0.26 1.13 15 19 O -0.50 -6.08 13.50 -19.43 -0.26 -6.34 15 20 C -0.14 -2.21 9.66 -39.43 -0.38 -2.59 15 21 O -0.36 -9.23 9.90 -17.27 -0.17 -9.40 15 22 H 0.27 6.89 8.29 -40.82 -0.34 6.55 15 23 H 0.06 1.33 8.14 -51.92 -0.42 0.91 15 24 H 0.05 1.12 7.91 -51.93 -0.41 0.71 15 25 H 0.13 2.50 7.46 -52.49 -0.39 2.11 15 26 H 0.13 1.46 8.06 -52.48 -0.42 1.03 15 27 H 0.12 1.36 8.06 -52.49 -0.42 0.93 15 28 H 0.39 2.70 9.06 45.56 0.41 3.11 15 29 H 0.13 1.83 8.06 -52.49 -0.42 1.40 15 LS Contribution 261.62 15.07 3.94 3.94 Total: -1.00 -32.01 261.62 -6.53 -38.54 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -2.05 Total: 4.41 kcal Atomic # 6 Polarization: -4.84 SS G_CDS: -3.04 Total: -7.88 kcal Atomic # 7 Polarization: -37.48 SS G_CDS: 0.08 Total: -37.40 kcal Atomic # 8 Polarization: -15.31 SS G_CDS: -0.43 Total: -15.74 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -5.03 Total: 14.14 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -32.01 -6.53 -38.54 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260459149.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.333 kcal (2) G-P(sol) polarization free energy of solvation -32.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds