Wall clock time and date at job start Mon Mar 30 2020 03:11:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30597 * 1 3 3 Si 1.86803 * 119.99951 * 2 1 4 4 H 1.48498 * 109.46611 * 95.01468 * 3 2 1 5 5 H 1.48499 * 109.47147 * 215.01470 * 3 2 1 6 6 H 1.48502 * 109.47075 * 335.01759 * 3 2 1 7 7 C 1.40211 * 120.00234 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00696 * 173.88625 * 7 2 1 9 9 C 1.41262 * 120.00062 * 353.88746 * 7 2 1 10 10 N 1.30637 * 123.22327 * 5.95109 * 9 7 2 11 11 C 1.47582 * 108.33770 * 180.59195 * 10 9 7 12 12 C 1.54790 * 102.10619 * 14.98957 * 11 10 9 13 13 H 1.09001 * 111.01618 * 94.38854 * 12 11 10 14 14 C 1.50695 * 111.01459 * 218.27201 * 12 11 10 15 15 C 1.38289 * 119.97397 * 85.00170 * 14 12 11 16 16 C 1.38236 * 120.11443 * 179.97438 * 15 14 12 17 17 C 1.38165 * 120.05998 * 359.95864 * 16 15 14 18 18 C 1.38719 * 119.93834 * 0.02562 * 17 16 15 19 19 O 1.35901 * 120.05316 * 180.02562 * 18 17 16 20 20 C 1.38127 * 119.97161 * 264.72477 * 14 12 11 21 21 O 1.35191 * 123.22797 * 185.65768 * 9 7 2 22 22 H 0.97001 * 120.00623 * 359.97438 * 1 2 3 23 23 H 1.09008 * 110.90177 * 133.19201 * 11 10 9 24 24 H 1.08997 * 110.90286 * 256.75392 * 11 10 9 25 25 H 1.08000 * 119.93732 * 359.97438 * 15 14 12 26 26 H 1.08004 * 119.97148 * 179.97438 * 16 15 14 27 27 H 1.07995 * 120.03219 * 180.02562 * 17 16 15 28 28 H 0.96704 * 113.99606 * 89.99518 * 19 18 17 29 29 H 1.07999 * 120.03061 * 0.02562 * 20 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3060 0.0000 0.0000 3 14 2.2400 1.6178 0.0000 4 1 2.5934 1.9852 1.3947 5 1 3.4805 1.4731 -0.8033 6 1 1.3884 2.6810 -0.5913 7 6 2.0071 -1.2142 -0.0005 8 1 3.0825 -1.2169 -0.1002 9 6 1.3068 -2.4342 0.1292 10 7 0.0029 -2.5134 0.1404 11 6 -0.3748 -3.9306 0.3046 12 6 0.9560 -4.5693 0.7704 13 1 1.0052 -4.6210 1.8581 14 6 1.1445 -5.9331 0.1576 15 6 1.7024 -6.0535 -1.1020 16 6 1.8770 -7.3032 -1.6666 17 6 1.4952 -8.4355 -0.9731 18 6 0.9356 -8.3175 0.2907 19 8 0.5596 -9.4297 0.9752 20 6 0.7650 -7.0622 0.8570 21 8 1.9218 -3.6323 0.2479 22 1 -0.4851 0.8400 0.0004 23 1 -1.1470 -4.0415 1.0660 24 1 -0.7014 -4.3584 -0.6432 25 1 2.0021 -5.1697 -1.6454 26 1 2.3126 -7.3945 -2.6507 27 1 1.6322 -9.4116 -1.4145 28 1 1.2557 -9.8015 1.5342 29 1 0.3331 -6.9680 1.8423 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260459149.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:18 Heat of formation + Delta-G solvation = -56.862048 kcal Electronic energy + Delta-G solvation = -15537.398537 eV Core-core repulsion = 12811.238807 eV Total energy + Delta-G solvation = -2726.159730 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.63910 -40.34920 -37.66818 -35.60050 -33.61706 -33.00612 -30.93214 -29.96727 -27.39262 -24.29410 -23.63748 -22.49687 -21.78588 -19.05580 -18.83185 -17.68990 -17.33127 -17.27064 -16.38980 -16.03782 -15.73119 -15.28139 -14.67080 -14.32402 -13.90452 -13.63820 -13.53513 -13.19932 -12.96086 -12.62396 -12.55964 -12.44801 -12.33586 -11.88438 -11.47037 -11.08189 -10.24228 -9.79426 -9.53056 -9.44627 -8.43868 -6.81225 0.19860 0.27168 1.40963 1.43850 1.60036 2.08724 2.24500 2.53105 2.92196 3.21032 3.37294 3.72515 3.88114 3.91537 4.14061 4.19040 4.32514 4.54016 4.61843 4.79674 4.86862 4.90744 4.96963 5.29934 5.34951 5.39489 5.49425 5.78120 5.82214 6.10543 6.68524 6.84293 6.84769 7.99235 8.49931 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.061696 B = 0.005541 C = 0.005338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 453.728627 B = 5052.328015 C = 5244.622012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.774 5.774 2 C 0.031 3.969 3 Si 1.005 2.995 4 H -0.260 1.260 5 H -0.253 1.253 6 H -0.267 1.267 7 C -0.485 4.485 8 H 0.090 0.910 9 C 0.355 3.645 10 N -0.639 5.639 11 C 0.015 3.985 12 C 0.088 3.912 13 H 0.085 0.915 14 C -0.070 4.070 15 C -0.128 4.128 16 C -0.097 4.097 17 C -0.143 4.143 18 C 0.109 3.891 19 O -0.503 6.503 20 C -0.145 4.145 21 O -0.375 6.375 22 H 0.282 0.718 23 H 0.069 0.931 24 H 0.043 0.957 25 H 0.105 0.895 26 H 0.154 0.846 27 H 0.159 0.841 28 H 0.412 0.588 29 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.423 -12.410 0.393 13.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.399 5.399 2 C -0.190 4.190 3 Si 0.824 3.176 4 H -0.184 1.184 5 H -0.177 1.177 6 H -0.191 1.191 7 C -0.523 4.523 8 H 0.108 0.892 9 C 0.155 3.845 10 N -0.386 5.386 11 C -0.115 4.115 12 C 0.029 3.971 13 H 0.103 0.897 14 C -0.071 4.071 15 C -0.146 4.146 16 C -0.115 4.115 17 C -0.161 4.161 18 C 0.064 3.936 19 O -0.316 6.316 20 C -0.164 4.164 21 O -0.283 6.283 22 H 0.092 0.908 23 H 0.087 0.913 24 H 0.062 0.938 25 H 0.123 0.877 26 H 0.172 0.828 27 H 0.177 0.823 28 H 0.271 0.729 29 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 3.118 -11.910 0.017 12.311 hybrid contribution 0.807 0.049 0.472 0.936 sum 3.925 -11.861 0.488 12.503 Atomic orbital electron populations 1.70125 1.09074 1.29574 1.31156 1.26895 0.95744 1.04239 0.92122 0.84902 0.78549 0.74451 0.79744 1.18439 1.17686 1.19122 1.19055 0.95087 0.87553 1.50603 0.89158 1.22361 0.88396 0.84644 0.89067 1.76143 1.09801 1.10562 1.42058 1.23801 0.96149 0.92717 0.98876 1.22685 0.89568 0.87487 0.97324 0.89743 1.19494 0.99573 0.92589 0.95419 1.21077 0.99795 0.98645 0.95102 1.21289 0.98712 0.90700 1.00777 1.21701 0.99299 1.00305 0.94801 1.18347 0.97295 0.85627 0.92307 1.84770 1.43138 1.40681 1.63047 1.21230 1.02597 0.91301 1.01244 1.86938 1.40433 1.20100 1.80875 0.90786 0.91285 0.93840 0.87718 0.82786 0.82322 0.72885 0.84508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -44.06 11.76 21.86 0.26 -43.80 15 2 C 0.03 1.63 5.49 85.36 0.47 2.10 15 3 Si 1.00 39.20 29.57 68.60 2.03 41.23 15 4 H -0.26 -9.70 7.11 99.48 0.71 -8.99 15 5 H -0.25 -9.41 7.11 99.48 0.71 -8.70 15 6 H -0.27 -9.84 7.11 99.48 0.71 -9.14 15 7 C -0.49 -27.77 9.50 23.49 0.22 -27.55 15 8 H 0.09 4.84 7.86 -2.91 -0.02 4.82 15 9 C 0.36 20.95 7.42 85.61 0.64 21.58 15 10 N -0.64 -38.18 9.71 -456.20 -4.43 -42.61 15 11 C 0.02 0.76 7.66 86.78 0.67 1.42 15 12 C 0.09 3.92 3.96 30.46 0.12 4.05 15 13 H 0.08 3.57 8.11 -2.39 -0.02 3.55 15 14 C -0.07 -2.60 5.04 -19.88 -0.10 -2.70 15 15 C -0.13 -4.53 9.38 22.28 0.21 -4.33 15 16 C -0.10 -2.57 10.04 22.25 0.22 -2.35 15 17 C -0.14 -3.31 9.99 22.37 0.22 -3.09 15 18 C 0.11 2.77 6.71 22.51 0.15 2.92 15 19 O -0.50 -10.27 13.50 -92.43 -1.25 -11.52 15 20 C -0.15 -4.40 9.66 22.37 0.22 -4.19 15 21 O -0.37 -19.91 9.90 -84.71 -0.84 -20.75 15 22 H 0.28 14.40 8.29 -92.71 -0.77 13.63 15 23 H 0.07 3.19 8.14 -2.38 -0.02 3.17 15 24 H 0.04 2.14 7.91 -2.39 -0.02 2.12 15 25 H 0.10 4.21 7.46 -2.91 -0.02 4.19 15 26 H 0.15 3.12 8.06 -2.91 -0.02 3.10 15 27 H 0.16 2.62 8.06 -2.91 -0.02 2.60 15 28 H 0.41 4.02 9.06 -74.05 -0.67 3.35 15 29 H 0.14 3.76 8.06 -2.91 -0.02 3.74 15 Total: -1.00 -71.45 261.62 -0.69 -72.14 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: 0.51 Total: 17.43 kcal Atomic # 6 Polarization: -15.17 SS G_CDS: 3.04 Total: -12.13 kcal Atomic # 7 Polarization: -82.23 SS G_CDS: -4.17 Total: -86.41 kcal Atomic # 8 Polarization: -30.18 SS G_CDS: -2.09 Total: -32.26 kcal Atomic # 14 Polarization: 39.20 SS G_CDS: 2.03 Total: 41.23 kcal Total: -71.45 -0.69 -72.14 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260459149.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.275 kcal (2) G-P(sol) polarization free energy of solvation -71.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds