Wall clock time and date at job start Mon Mar 30 2020 02:56:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 N 1.46491 * 109.46957 * 179.72213 * 9 7 2 11 11 C 1.34359 * 123.89751 * 90.02410 * 10 9 7 12 12 O 1.21300 * 126.43419 * 359.95308 * 11 10 9 13 13 C 1.51388 * 107.13489 * 179.97438 * 11 10 9 14 14 C 1.51137 * 104.09859 * 359.97438 * 13 11 10 15 15 C 1.37673 * 132.78110 * 179.97438 * 14 13 11 16 16 C 1.38828 * 119.86838 * 179.30899 * 15 14 13 17 17 O 1.35971 * 120.14477 * 180.20311 * 16 15 14 18 18 C 1.38746 * 119.71272 * 0.60922 * 16 15 14 19 19 C 1.37908 * 120.31129 * 359.59115 * 18 16 15 20 20 C 1.38886 * 106.36011 * 359.76056 * 14 13 11 21 21 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 23 23 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 24 24 H 1.08996 * 110.50406 * 118.65610 * 13 11 10 25 25 H 1.09002 * 110.50407 * 241.34625 * 13 11 10 26 26 H 1.07997 * 120.06020 * 359.97438 * 15 14 13 27 27 H 0.96700 * 113.99685 * 270.41236 * 17 16 15 28 28 H 1.08000 * 119.84728 * 179.56904 * 18 16 15 29 29 H 1.08008 * 119.89070 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 7 2.2028 -3.6127 -0.0102 11 6 2.6893 -4.1875 1.1025 12 8 2.4241 -3.8821 2.2461 13 6 3.6309 -5.2876 0.6611 14 6 3.5851 -5.2278 -0.8484 15 6 4.2129 -5.9576 -1.8327 16 6 3.9595 -5.6780 -3.1687 17 8 4.5732 -6.3980 -4.1453 18 6 3.0837 -4.6551 -3.5031 19 6 2.4593 -3.9227 -2.5155 20 6 2.7043 -4.2041 -1.1728 21 1 -0.4850 0.8401 -0.0004 22 1 0.6242 -2.5609 0.8844 23 1 0.6244 -2.5529 -0.8956 24 1 4.6412 -5.0927 1.0208 25 1 3.2788 -6.2565 1.0152 26 1 4.8928 -6.7531 -1.5658 27 1 5.4220 -6.0320 -4.4292 28 1 2.8903 -4.4312 -4.5418 29 1 1.7791 -3.1276 -2.7835 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260471586.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:04 Heat of formation + Delta-G solvation = -44.777636 kcal Electronic energy + Delta-G solvation = -15749.268161 eV Core-core repulsion = 13023.632451 eV Total energy + Delta-G solvation = -2725.635710 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.95720 -38.65218 -36.75903 -34.65036 -33.28093 -32.02285 -29.32872 -27.44791 -26.89136 -23.31931 -21.95293 -21.53512 -19.55841 -18.04006 -16.85292 -16.52075 -16.15628 -15.39982 -15.11829 -14.72388 -14.12108 -13.95537 -13.39058 -12.90816 -12.77745 -12.58047 -12.25653 -11.88198 -11.63770 -11.46973 -11.03752 -10.81636 -10.33038 -10.26318 -10.15913 -9.36447 -9.21078 -8.70281 -8.59901 -7.26776 -6.20565 -4.27774 1.37397 1.51327 3.01822 3.21850 3.29661 3.33911 3.61390 3.95460 4.24688 4.33313 4.70373 4.75768 5.09083 5.14288 5.34583 5.46962 5.62658 5.72842 5.92751 6.10618 6.36755 6.46686 6.57020 6.73306 6.91079 7.10552 7.32663 7.74000 7.75642 7.93229 7.97844 8.57611 8.79180 9.38596 10.87150 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.026824 B = 0.007903 C = 0.006706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.600831 B = 3541.937803 C = 4174.439014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.065 3.935 3 Si 0.903 3.097 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.536 4.536 8 H 0.061 0.939 9 C 0.238 3.762 10 N -0.532 5.532 11 C 0.519 3.481 12 O -0.506 6.506 13 C -0.114 4.114 14 C -0.147 4.147 15 C -0.092 4.092 16 C 0.057 3.943 17 O -0.498 6.498 18 C -0.107 4.107 19 C -0.120 4.120 20 C 0.170 3.830 21 H 0.266 0.734 22 H 0.049 0.951 23 H 0.043 0.957 24 H 0.116 0.884 25 H 0.115 0.885 26 H 0.127 0.873 27 H 0.382 0.618 28 H 0.130 0.870 29 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.087 -10.012 -6.540 14.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.138 4.138 3 Si 0.730 3.270 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.574 4.574 8 H 0.079 0.921 9 C 0.120 3.880 10 N -0.250 5.250 11 C 0.307 3.693 12 O -0.381 6.381 13 C -0.153 4.153 14 C -0.151 4.151 15 C -0.111 4.111 16 C 0.012 3.988 17 O -0.307 6.307 18 C -0.127 4.127 19 C -0.141 4.141 20 C 0.071 3.929 21 H 0.076 0.924 22 H 0.067 0.933 23 H 0.061 0.939 24 H 0.134 0.866 25 H 0.133 0.867 26 H 0.145 0.855 27 H 0.236 0.764 28 H 0.148 0.852 29 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 7.161 -9.955 -5.743 13.541 hybrid contribution 0.777 1.369 -0.144 1.581 sum 7.937 -8.585 -5.887 13.091 Atomic orbital electron populations 1.69936 1.06042 1.27363 1.49572 1.24934 0.94935 0.99422 0.94553 0.86357 0.80016 0.82834 0.77785 1.19654 1.20705 1.20679 1.21371 0.93539 0.90146 1.52345 0.92050 1.19566 0.87195 0.81880 0.99387 1.46516 1.42159 1.32551 1.03820 1.20419 0.81179 0.82978 0.84693 1.90730 1.61633 1.66798 1.18966 1.21065 1.01837 1.00337 0.92092 1.19696 1.01373 0.99127 0.94867 1.20314 1.00247 0.99607 0.90888 1.18080 0.98942 0.94912 0.86877 1.84869 1.38507 1.52371 1.54938 1.21070 0.97681 0.94436 0.99475 1.20390 1.02791 1.01653 0.89227 1.18370 0.93717 0.92321 0.88521 0.92438 0.93272 0.93923 0.86645 0.86711 0.85491 0.76409 0.85176 0.84625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.66 13.29 55.43 0.74 -24.92 15 2 C 0.06 1.80 5.46 -17.82 -0.10 1.70 15 3 Si 0.90 21.38 29.54 -169.99 -5.02 16.35 15 4 H -0.27 -6.39 7.11 56.52 0.40 -5.99 15 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 15 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 15 7 C -0.54 -14.91 9.39 -34.44 -0.32 -15.23 15 8 H 0.06 1.73 7.81 -52.49 -0.41 1.32 15 9 C 0.24 6.13 5.49 -5.20 -0.03 6.10 15 10 N -0.53 -11.73 2.72 -114.49 -0.31 -12.04 15 11 C 0.52 10.97 8.23 -10.83 -0.09 10.88 15 12 O -0.51 -12.43 17.67 5.54 0.10 -12.34 15 13 C -0.11 -1.73 6.87 -28.48 -0.20 -1.92 15 14 C -0.15 -2.31 6.34 -104.37 -0.66 -2.97 15 15 C -0.09 -1.22 9.98 -39.57 -0.39 -1.62 15 16 C 0.06 0.76 6.72 -39.18 -0.26 0.50 15 17 O -0.50 -5.63 13.51 -19.65 -0.27 -5.90 15 18 C -0.11 -1.51 9.96 -39.51 -0.39 -1.91 15 19 C -0.12 -2.02 9.73 -39.29 -0.38 -2.41 15 20 C 0.17 3.17 6.70 -83.60 -0.56 2.61 15 21 H 0.27 7.19 8.31 -40.82 -0.34 6.86 15 22 H 0.05 1.39 7.95 -51.93 -0.41 0.98 15 23 H 0.04 1.10 7.60 -51.93 -0.39 0.70 15 24 H 0.12 1.51 8.14 -51.93 -0.42 1.09 15 25 H 0.11 1.45 8.14 -51.93 -0.42 1.03 15 26 H 0.13 1.37 8.06 -52.49 -0.42 0.95 15 27 H 0.38 2.47 9.06 45.56 0.41 2.88 15 28 H 0.13 1.54 8.06 -52.49 -0.42 1.11 15 29 H 0.14 2.37 7.69 -52.48 -0.40 1.96 15 LS Contribution 263.75 15.07 3.97 3.97 Total: -1.00 -32.34 263.75 -6.21 -38.55 By element: Atomic # 1 Polarization: 2.62 SS G_CDS: -2.03 Total: 0.58 kcal Atomic # 6 Polarization: -0.87 SS G_CDS: -3.39 Total: -4.26 kcal Atomic # 7 Polarization: -37.39 SS G_CDS: 0.42 Total: -36.96 kcal Atomic # 8 Polarization: -18.07 SS G_CDS: -0.17 Total: -18.23 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -32.34 -6.21 -38.55 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260471586.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.229 kcal (2) G-P(sol) polarization free energy of solvation -32.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds