Wall clock time and date at job start Mon Mar 30 2020 02:56:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 N 1.46491 * 109.46957 * 179.72213 * 9 7 2 11 11 C 1.34359 * 123.89751 * 90.02410 * 10 9 7 12 12 O 1.21300 * 126.43419 * 359.95308 * 11 10 9 13 13 C 1.51388 * 107.13489 * 179.97438 * 11 10 9 14 14 C 1.51137 * 104.09859 * 359.97438 * 13 11 10 15 15 C 1.37673 * 132.78110 * 179.97438 * 14 13 11 16 16 C 1.38828 * 119.86838 * 179.30899 * 15 14 13 17 17 O 1.35971 * 120.14477 * 180.20311 * 16 15 14 18 18 C 1.38746 * 119.71272 * 0.60922 * 16 15 14 19 19 C 1.37908 * 120.31129 * 359.59115 * 18 16 15 20 20 C 1.38886 * 106.36011 * 359.76056 * 14 13 11 21 21 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 23 23 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 24 24 H 1.08996 * 110.50406 * 118.65610 * 13 11 10 25 25 H 1.09002 * 110.50407 * 241.34625 * 13 11 10 26 26 H 1.07997 * 120.06020 * 359.97438 * 15 14 13 27 27 H 0.96700 * 113.99685 * 270.41236 * 17 16 15 28 28 H 1.08000 * 119.84728 * 179.56904 * 18 16 15 29 29 H 1.08008 * 119.89070 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 7 2.2028 -3.6127 -0.0102 11 6 2.6893 -4.1875 1.1025 12 8 2.4241 -3.8821 2.2461 13 6 3.6309 -5.2876 0.6611 14 6 3.5851 -5.2278 -0.8484 15 6 4.2129 -5.9576 -1.8327 16 6 3.9595 -5.6780 -3.1687 17 8 4.5732 -6.3980 -4.1453 18 6 3.0837 -4.6551 -3.5031 19 6 2.4593 -3.9227 -2.5155 20 6 2.7043 -4.2041 -1.1728 21 1 -0.4850 0.8401 -0.0004 22 1 0.6242 -2.5609 0.8844 23 1 0.6244 -2.5529 -0.8956 24 1 4.6412 -5.0927 1.0208 25 1 3.2788 -6.2565 1.0152 26 1 4.8928 -6.7531 -1.5658 27 1 5.4220 -6.0320 -4.4292 28 1 2.8903 -4.4312 -4.5418 29 1 1.7791 -3.1276 -2.7835 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260471586.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:04 Heat of formation + Delta-G solvation = -67.946160 kcal Electronic energy + Delta-G solvation = -15750.272824 eV Core-core repulsion = 13023.632451 eV Total energy + Delta-G solvation = -2726.640373 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.37260 -39.89305 -38.12388 -36.20471 -35.05650 -33.58759 -30.77865 -28.74668 -28.64044 -25.23922 -23.29641 -22.72968 -21.10219 -19.11116 -18.87657 -18.05621 -17.64609 -16.92700 -16.50541 -16.23489 -15.60066 -15.24149 -14.88033 -14.61142 -14.04356 -14.02617 -13.66793 -13.57741 -13.35594 -12.84393 -12.74825 -12.61420 -12.31542 -11.94511 -11.37579 -10.99833 -10.91914 -10.74452 -9.84904 -8.73787 -8.30965 -6.51140 0.14860 0.34863 1.33328 1.35196 1.47065 1.54526 2.05009 2.33405 2.73155 2.95801 3.09485 3.38249 3.62397 3.98486 4.13601 4.31937 4.48956 4.52200 4.78020 4.79931 4.91287 4.97357 5.17813 5.24396 5.44769 5.51801 5.70341 5.82500 5.85519 6.32319 6.55032 6.98097 7.00268 7.21850 8.73685 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.026824 B = 0.007903 C = 0.006706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.600831 B = 3541.937803 C = 4174.439014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.014 3.986 3 Si 0.973 3.027 4 H -0.268 1.268 5 H -0.266 1.266 6 H -0.277 1.277 7 C -0.552 4.552 8 H 0.052 0.948 9 C 0.253 3.747 10 N -0.546 5.546 11 C 0.499 3.501 12 O -0.560 6.560 13 C -0.093 4.093 14 C -0.134 4.134 15 C -0.083 4.083 16 C 0.081 3.919 17 O -0.498 6.498 18 C -0.107 4.107 19 C -0.132 4.132 20 C 0.119 3.881 21 H 0.271 0.729 22 H 0.009 0.991 23 H 0.031 0.969 24 H 0.146 0.854 25 H 0.149 0.851 26 H 0.166 0.834 27 H 0.409 0.591 28 H 0.153 0.847 29 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.726 -11.397 -8.185 17.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.186 4.186 3 Si 0.797 3.203 4 H -0.193 1.193 5 H -0.191 1.191 6 H -0.202 1.202 7 C -0.590 4.590 8 H 0.070 0.930 9 C 0.133 3.867 10 N -0.265 5.265 11 C 0.290 3.710 12 O -0.440 6.440 13 C -0.132 4.132 14 C -0.137 4.137 15 C -0.101 4.101 16 C 0.036 3.964 17 O -0.311 6.311 18 C -0.126 4.126 19 C -0.153 4.153 20 C 0.022 3.978 21 H 0.080 0.920 22 H 0.027 0.973 23 H 0.049 0.951 24 H 0.163 0.837 25 H 0.167 0.833 26 H 0.183 0.817 27 H 0.268 0.732 28 H 0.171 0.829 29 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 9.842 -11.377 -7.456 16.790 hybrid contribution -0.009 1.682 0.196 1.694 sum 9.833 -9.694 -7.260 15.601 Atomic orbital electron populations 1.70042 1.07552 1.28610 1.49955 1.25860 0.95855 1.03108 0.93764 0.85285 0.78605 0.78129 0.78327 1.19267 1.19078 1.20234 1.21564 0.93180 0.91457 1.52844 0.92958 1.18991 0.87656 0.83321 0.96725 1.46438 1.42059 1.32058 1.05933 1.21530 0.81627 0.84060 0.83778 1.90677 1.63763 1.68791 1.20770 1.21042 1.01426 0.99024 0.91692 1.19826 1.00278 0.98085 0.95467 1.20631 0.99810 0.99622 0.90082 1.18127 0.97532 0.93255 0.87513 1.84812 1.40159 1.52051 1.54101 1.21275 0.97288 0.94256 0.99798 1.20415 1.03273 1.02059 0.89542 1.18684 0.96496 0.94591 0.87990 0.91950 0.97330 0.95106 0.83683 0.83329 0.81677 0.73207 0.82935 0.86725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.03 13.29 21.45 0.28 -54.75 15 2 C 0.01 0.82 5.46 84.66 0.46 1.28 15 3 Si 0.97 44.49 29.54 68.60 2.03 46.52 15 4 H -0.27 -12.00 7.11 99.48 0.71 -11.30 15 5 H -0.27 -11.45 7.11 99.48 0.71 -10.74 15 6 H -0.28 -12.42 7.11 99.48 0.71 -11.72 15 7 C -0.55 -32.21 9.39 25.60 0.24 -31.97 15 8 H 0.05 3.07 7.81 -2.91 -0.02 3.04 15 9 C 0.25 14.03 5.49 85.64 0.47 14.50 15 10 N -0.55 -25.22 2.72 -634.74 -1.73 -26.94 15 11 C 0.50 21.69 8.23 87.94 0.72 22.42 15 12 O -0.56 -28.99 17.67 -3.09 -0.05 -29.04 15 13 C -0.09 -2.62 6.87 29.46 0.20 -2.42 15 14 C -0.13 -3.84 6.34 -19.70 -0.12 -3.96 15 15 C -0.08 -1.82 9.98 22.28 0.22 -1.60 15 16 C 0.08 1.82 6.72 22.53 0.15 1.97 15 17 O -0.50 -8.58 13.51 -93.23 -1.26 -9.84 15 18 C -0.11 -2.76 9.96 22.31 0.22 -2.54 15 19 C -0.13 -4.50 9.73 22.46 0.22 -4.28 15 20 C 0.12 4.46 6.70 38.30 0.26 4.72 15 21 H 0.27 15.03 8.31 -92.70 -0.77 14.26 15 22 H 0.01 0.53 7.95 -2.38 -0.02 0.52 15 23 H 0.03 1.73 7.60 -2.39 -0.02 1.71 15 24 H 0.15 3.28 8.14 -2.39 -0.02 3.26 15 25 H 0.15 3.21 8.14 -2.39 -0.02 3.20 15 26 H 0.17 2.45 8.06 -2.91 -0.02 2.43 15 27 H 0.41 2.92 9.06 -74.06 -0.67 2.25 15 28 H 0.15 3.17 8.06 -2.91 -0.02 3.14 15 29 H 0.11 4.27 7.69 -2.91 -0.02 4.25 15 Total: -1.00 -74.47 263.75 2.83 -71.64 By element: Atomic # 1 Polarization: 3.78 SS G_CDS: 0.51 Total: 4.29 kcal Atomic # 6 Polarization: -4.93 SS G_CDS: 3.05 Total: -1.89 kcal Atomic # 7 Polarization: -80.25 SS G_CDS: -1.44 Total: -81.69 kcal Atomic # 8 Polarization: -37.56 SS G_CDS: -1.31 Total: -38.88 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -74.47 2.83 -71.64 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260471586.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.698 kcal (2) G-P(sol) polarization free energy of solvation -74.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds