Wall clock time and date at job start Mon Mar 30 2020 03:36:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35798 * 117.00139 * 2 1 4 4 C 1.39105 * 120.17159 * 90.00061 * 3 2 1 5 5 O 1.36005 * 119.99818 * 359.95109 * 4 3 2 6 6 C 1.38478 * 119.99835 * 180.23452 * 4 3 2 7 7 C 1.38509 * 120.33744 * 359.48278 * 6 4 3 8 8 C 1.50699 * 119.82936 * 180.25887 * 7 6 4 9 9 C 1.50698 * 109.47161 * 270.25583 * 8 7 6 10 10 H 1.07996 * 120.00363 * 0.02562 * 9 8 7 11 11 C 1.37886 * 119.99949 * 180.02562 * 9 8 7 12 12 N 1.31516 * 120.00040 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 120.00001 * 180.02562 * 11 9 8 14 14 H 1.48504 * 109.46923 * 59.99959 * 13 11 9 15 15 H 1.48492 * 109.47001 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.47038 * 300.00220 * 13 11 9 17 17 C 1.37782 * 120.33771 * 0.51930 * 7 6 4 18 18 C 1.39807 * 119.99159 * 359.74175 * 17 7 6 19 19 C 1.43204 * 120.16465 * 179.97438 * 18 17 7 20 20 N 3.53138 * 95.82749 * 281.56466 * 2 1 3 21 21 H 1.09006 * 109.47275 * 60.00061 * 1 2 3 22 22 H 1.09000 * 109.47175 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47360 * 300.00533 * 1 2 3 24 24 H 0.96705 * 113.99633 * 90.00292 * 5 4 3 25 25 H 1.08009 * 119.82907 * 179.74525 * 6 4 3 26 26 H 1.08997 * 109.47590 * 30.25668 * 8 7 6 27 27 H 1.09000 * 109.47082 * 150.26002 * 8 7 6 28 28 H 0.96999 * 119.99473 * 180.02562 * 12 11 9 29 29 H 1.07996 * 120.00274 * 179.76391 * 17 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2100 0.0000 4 6 2.3629 1.8329 1.2026 5 8 2.0549 1.2305 2.3824 6 6 2.9873 3.0689 1.1984 7 6 3.3085 3.6864 0.0009 8 6 3.9931 5.0289 0.0098 9 6 2.9556 6.1218 0.0124 10 1 1.9055 5.8696 0.0085 11 6 3.3470 7.4440 0.0198 12 7 4.6257 7.7512 0.0240 13 14 2.0609 8.7988 0.0237 14 1 1.2098 8.6698 1.2339 15 1 2.7355 10.1216 0.0311 16 1 1.2149 8.6818 -1.1911 17 6 3.0005 3.0820 -1.1983 18 6 2.3653 1.8366 -1.2104 19 6 2.0430 1.2052 -2.4547 20 7 1.7875 0.7043 -3.4418 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 2.7527 0.6547 2.7240 25 1 3.2288 3.5520 2.1338 26 1 4.6133 5.1146 0.9019 27 1 4.6184 5.1237 -0.8780 28 1 4.9010 8.6813 0.0295 29 1 3.2500 3.5700 -2.1288 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260499219.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:42 Heat of formation + Delta-G solvation = -53.030684 kcal Electronic energy + Delta-G solvation = -15408.971054 eV Core-core repulsion = 12682.977464 eV Total energy + Delta-G solvation = -2725.993589 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.47178 -38.70921 -38.27357 -37.31033 -35.14777 -32.79801 -31.18747 -29.17401 -27.58249 -25.06036 -24.94498 -22.64729 -19.86367 -18.56546 -18.47479 -18.39011 -17.55159 -16.71558 -16.56414 -15.61651 -15.24778 -15.15711 -14.87889 -14.41574 -14.39132 -14.12395 -13.67593 -13.39201 -12.96148 -12.86796 -12.63863 -12.47128 -12.40163 -12.13651 -11.54255 -11.44545 -10.91317 -10.54835 -9.84557 -9.42626 -8.16598 -6.27977 -0.37373 0.11619 1.45950 1.46516 1.49616 1.54405 1.82164 2.37530 2.47704 2.65615 2.87444 3.16262 3.33294 4.00738 4.07566 4.36306 4.37725 4.38282 4.46182 4.62374 4.75590 5.08706 5.17182 5.23252 5.39961 5.58048 5.78741 5.84603 6.18950 6.25305 6.35078 6.84360 6.86665 7.40730 8.92410 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.028260 B = 0.006678 C = 0.006144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.565478 B = 4192.021175 C = 4556.144990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.339 6.339 3 C 0.095 3.905 4 C 0.103 3.897 5 O -0.491 6.491 6 C -0.099 4.099 7 C -0.040 4.040 8 C 0.054 3.946 9 C -0.530 4.530 10 H 0.059 0.941 11 C 0.011 3.989 12 N -0.926 5.926 13 Si 0.956 3.044 14 H -0.268 1.268 15 H -0.285 1.285 16 H -0.271 1.271 17 C -0.066 4.066 18 C -0.042 4.042 19 C 0.284 3.716 20 N -0.448 5.448 21 H 0.037 0.963 22 H 0.119 0.881 23 H 0.058 0.942 24 H 0.413 0.587 25 H 0.144 0.856 26 H 0.020 0.980 27 H 0.016 0.984 28 H 0.265 0.735 29 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.065 -12.050 3.889 13.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.256 6.256 3 C 0.048 3.952 4 C 0.058 3.942 5 O -0.304 6.304 6 C -0.119 4.119 7 C -0.041 4.041 8 C 0.018 3.982 9 C -0.568 4.568 10 H 0.077 0.923 11 C -0.188 4.188 12 N -0.566 5.566 13 Si 0.781 3.219 14 H -0.193 1.193 15 H -0.211 1.211 16 H -0.196 1.196 17 C -0.087 4.087 18 C -0.046 4.046 19 C -0.031 4.031 20 N -0.124 5.124 21 H 0.056 0.944 22 H 0.137 0.863 23 H 0.077 0.923 24 H 0.272 0.728 25 H 0.162 0.838 26 H 0.038 0.962 27 H 0.035 0.965 28 H 0.074 0.926 29 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -5.794 -12.578 2.311 14.040 hybrid contribution 0.078 1.117 0.314 1.163 sum -5.716 -11.461 2.626 13.073 Atomic orbital electron populations 1.23223 0.76997 1.04866 1.00937 1.85910 1.21587 1.23820 1.94285 1.18895 0.99199 0.86625 0.90438 1.18319 0.99159 0.91990 0.84770 1.84758 1.46552 1.65055 1.34008 1.21585 0.96764 0.94183 0.99321 1.20157 0.95917 0.95954 0.92050 1.18170 0.94828 0.87829 0.97413 1.21371 0.93300 0.91083 1.51026 0.92298 1.25784 0.97119 1.01167 0.94745 1.70043 1.16253 1.19134 1.51173 0.85629 0.79140 0.78020 0.79074 1.19265 1.21058 1.19606 1.21024 0.96573 0.91701 0.99385 1.16174 1.07002 0.95336 0.86126 1.25471 0.92764 0.92407 0.92439 1.81169 1.09988 1.09721 1.11544 0.94408 0.86274 0.92292 0.72767 0.83801 0.96185 0.96540 0.92631 0.84429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 11.13 113.37 1.26 1.97 15 2 O -0.34 -9.07 9.63 -77.37 -0.75 -9.82 15 3 C 0.10 2.75 5.74 22.91 0.13 2.89 15 4 C 0.10 2.87 6.71 22.54 0.15 3.02 15 5 O -0.49 -11.17 13.29 -79.69 -1.06 -12.23 15 6 C -0.10 -3.16 9.62 22.39 0.22 -2.95 15 7 C -0.04 -1.50 5.06 -19.91 -0.10 -1.60 15 8 C 0.05 2.54 5.09 29.10 0.15 2.69 15 9 C -0.53 -27.43 9.09 25.60 0.23 -27.19 15 10 H 0.06 2.98 7.74 -2.91 -0.02 2.96 15 11 C 0.01 0.57 5.46 84.66 0.46 1.03 15 12 N -0.93 -52.34 13.29 21.45 0.28 -52.06 15 13 Si 0.96 41.88 29.54 68.60 2.03 43.91 15 14 H -0.27 -11.32 7.11 99.48 0.71 -10.61 15 15 H -0.29 -12.33 7.11 99.48 0.71 -11.62 15 16 H -0.27 -11.58 7.11 99.48 0.71 -10.87 15 17 C -0.07 -2.23 9.39 22.54 0.21 -2.02 15 18 C -0.04 -1.31 5.75 -21.23 -0.12 -1.43 15 19 C 0.28 9.09 14.87 88.33 1.31 10.40 15 20 N -0.45 -15.34 18.54 19.01 0.35 -14.99 15 21 H 0.04 0.84 8.14 -2.38 -0.02 0.82 15 22 H 0.12 1.86 8.14 -2.39 -0.02 1.84 15 23 H 0.06 1.20 8.14 -2.39 -0.02 1.18 15 24 H 0.41 5.33 9.06 -74.05 -0.67 4.66 15 25 H 0.14 4.42 8.06 -2.91 -0.02 4.39 15 26 H 0.02 0.97 8.08 -2.39 -0.02 0.96 15 27 H 0.02 0.81 8.08 -2.39 -0.02 0.79 15 28 H 0.26 14.22 8.31 -92.71 -0.77 13.45 15 29 H 0.14 4.56 8.06 -2.91 -0.02 4.54 15 Total: -1.00 -61.19 275.34 5.28 -55.91 By element: Atomic # 1 Polarization: 1.97 SS G_CDS: 0.51 Total: 2.48 kcal Atomic # 6 Polarization: -17.10 SS G_CDS: 3.91 Total: -13.19 kcal Atomic # 7 Polarization: -67.69 SS G_CDS: 0.64 Total: -67.05 kcal Atomic # 8 Polarization: -20.24 SS G_CDS: -1.80 Total: -22.05 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.91 kcal Total: -61.19 5.28 -55.91 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260499219.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.877 kcal (2) G-P(sol) polarization free energy of solvation -61.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds