Wall clock time and date at job start Mon Mar 30 2020 03:09:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00125 * 2 1 4 4 H 1.48503 * 109.46845 * 269.99927 * 3 2 1 5 5 H 1.48503 * 109.47399 * 29.99417 * 3 2 1 6 6 H 1.48498 * 109.47295 * 150.00023 * 3 2 1 7 7 C 1.37877 * 120.00069 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00099 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00216 * 179.97438 * 7 2 1 10 10 H 1.09007 * 110.91778 * 59.30413 * 9 7 2 11 11 C 1.54808 * 111.04869 * 183.29445 * 9 7 2 12 12 N 1.47586 * 102.00473 * 141.50285 * 11 9 7 13 13 C 1.29629 * 108.44497 * 344.94541 * 12 11 9 14 14 C 1.48013 * 123.08506 * 179.59108 * 13 12 11 15 15 C 1.39526 * 120.10700 * 179.74277 * 14 13 12 16 16 C 1.37987 * 119.96866 * 179.76492 * 15 14 13 17 17 C 1.38273 * 120.20055 * 0.51587 * 16 15 14 18 18 C 1.38802 * 120.21988 * 359.74165 * 17 16 15 19 19 O 1.35907 * 119.98597 * 180.02562 * 18 17 16 20 20 C 1.38516 * 120.02401 * 359.97438 * 18 17 16 21 21 O 1.34995 * 113.85074 * 359.63481 * 13 12 11 22 22 H 0.97000 * 119.99667 * 0.02562 * 1 2 3 23 23 H 1.08998 * 110.92590 * 259.67897 * 11 9 7 24 24 H 1.09004 * 110.92631 * 23.28986 * 11 9 7 25 25 H 1.07996 * 120.01565 * 0.02562 * 15 14 13 26 26 H 1.08002 * 119.90200 * 180.23732 * 16 15 14 27 27 H 1.08001 * 119.89304 * 179.71816 * 17 16 15 28 28 H 0.96696 * 114.00615 * 269.97448 * 19 18 17 29 29 H 1.07993 * 120.09817 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6528 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0000 10 1 3.9011 -0.6737 0.8750 11 6 4.0675 -2.6365 -0.0823 12 7 5.2318 -2.4664 -0.9731 13 6 5.1330 -1.3159 -1.5621 14 6 6.1387 -0.8115 -2.5238 15 6 5.9674 0.4353 -3.1262 16 6 6.9092 0.9050 -4.0186 17 6 8.0184 0.1389 -4.3266 18 6 8.1943 -1.1049 -3.7361 19 8 9.2865 -1.8536 -4.0418 20 6 7.2575 -1.5828 -2.8345 21 8 4.0292 -0.6194 -1.2176 22 1 -0.4849 0.8401 -0.0004 23 1 4.3779 -2.9908 0.9006 24 1 3.3344 -3.3118 -0.5237 25 1 5.1001 1.0343 -2.8910 26 1 6.7774 1.8719 -4.4814 27 1 8.7502 0.5094 -5.0292 28 1 9.1579 -2.4484 -4.7933 29 1 7.3934 -2.5501 -2.3741 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260513302.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:34 Heat of formation + Delta-G solvation = -26.442114 kcal Electronic energy + Delta-G solvation = -15616.371729 eV Core-core repulsion = 12891.531107 eV Total energy + Delta-G solvation = -2724.840622 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.27560 -39.35734 -36.67693 -33.16809 -32.67850 -31.57174 -29.85021 -29.01848 -25.21355 -23.20073 -22.38720 -21.01333 -19.95941 -18.12136 -17.24036 -16.51777 -15.75701 -15.65102 -15.20542 -14.84594 -14.47822 -13.79818 -13.34836 -12.99345 -12.70926 -12.35582 -12.20479 -11.94137 -11.62706 -11.41681 -11.00586 -10.59624 -10.55521 -10.13487 -9.76005 -9.30926 -9.00611 -8.86062 -8.70043 -7.99600 -6.35672 -4.48700 0.92019 1.29029 2.86167 3.24348 3.26830 3.36058 3.79969 3.84625 4.25186 4.29356 4.69081 4.93351 5.05005 5.20254 5.32573 5.50797 5.69710 5.82335 5.89894 6.04961 6.18890 6.26225 6.37993 6.49511 6.58756 6.72341 6.94424 7.09374 7.40335 7.56913 8.15259 8.46277 8.65188 9.23745 10.73646 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.037202 B = 0.007333 C = 0.006342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.472233 B = 3817.675337 C = 4413.921310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.087 3.913 3 Si 0.894 3.106 4 H -0.269 1.269 5 H -0.289 1.289 6 H -0.265 1.265 7 C -0.522 4.522 8 H 0.088 0.912 9 C 0.141 3.859 10 H 0.057 0.943 11 C 0.009 3.991 12 N -0.554 5.554 13 C 0.326 3.674 14 C -0.014 4.014 15 C -0.089 4.089 16 C -0.111 4.111 17 C -0.133 4.133 18 C 0.092 3.908 19 O -0.498 6.498 20 C -0.097 4.097 21 O -0.350 6.350 22 H 0.271 0.729 23 H 0.084 0.916 24 H 0.087 0.913 25 H 0.137 0.863 26 H 0.132 0.868 27 H 0.129 0.871 28 H 0.389 0.611 29 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.984 0.885 -8.080 16.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.120 4.120 3 Si 0.722 3.278 4 H -0.195 1.195 5 H -0.216 1.216 6 H -0.190 1.190 7 C -0.558 4.558 8 H 0.105 0.895 9 C 0.087 3.913 10 H 0.074 0.926 11 C -0.120 4.120 12 N -0.291 5.291 13 C 0.104 3.896 14 C -0.015 4.015 15 C -0.109 4.109 16 C -0.129 4.129 17 C -0.152 4.152 18 C 0.048 3.952 19 O -0.307 6.307 20 C -0.117 4.117 21 O -0.253 6.253 22 H 0.081 0.919 23 H 0.103 0.897 24 H 0.105 0.895 25 H 0.155 0.845 26 H 0.150 0.850 27 H 0.147 0.853 28 H 0.244 0.756 29 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 14.382 0.686 -7.541 16.254 hybrid contribution -0.573 0.977 -0.179 1.147 sum 13.809 1.663 -7.721 15.908 Atomic orbital electron populations 1.69900 1.06532 1.27977 1.46877 1.25114 0.94851 0.99906 0.92097 0.86507 0.79876 0.82229 0.79223 1.19469 1.21574 1.18987 1.20894 0.86414 0.95481 1.53018 0.89452 1.22333 0.96594 0.89936 0.82412 0.92586 1.23878 0.91636 0.98969 0.97524 1.74832 1.23722 1.15763 1.14793 1.23287 0.86020 0.88404 0.91935 1.17820 0.92695 0.94677 0.96343 1.21457 0.99475 0.94809 0.95184 1.20956 0.93711 1.00044 0.98208 1.21518 0.98222 0.94920 1.00543 1.18260 0.87579 0.91797 0.97549 1.84837 1.34137 1.57173 1.54597 1.21514 0.91774 1.00790 0.97598 1.87289 1.36391 1.57586 1.44077 0.91929 0.89748 0.89459 0.84494 0.85047 0.85321 0.75592 0.83881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.93 13.96 55.43 0.77 -25.15 15 2 C 0.09 2.48 5.47 -17.82 -0.10 2.38 15 3 Si 0.89 21.87 26.54 -169.99 -4.51 17.36 15 4 H -0.27 -6.49 7.11 56.52 0.40 -6.09 15 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 15 6 H -0.27 -6.34 6.53 56.52 0.37 -5.98 15 7 C -0.52 -14.59 9.40 -34.44 -0.32 -14.91 15 8 H 0.09 2.58 7.88 -52.49 -0.41 2.17 15 9 C 0.14 3.48 2.88 -26.93 -0.08 3.40 15 10 H 0.06 1.37 7.21 -51.93 -0.37 1.00 15 11 C 0.01 0.20 7.67 -2.49 -0.02 0.18 15 12 N -0.55 -11.81 11.14 -57.65 -0.64 -12.46 15 13 C 0.33 6.94 7.59 -14.48 -0.11 6.83 15 14 C -0.01 -0.24 5.87 -104.98 -0.62 -0.86 15 15 C -0.09 -1.39 9.67 -39.19 -0.38 -1.77 15 16 C -0.11 -1.35 10.03 -39.66 -0.40 -1.75 15 17 C -0.13 -1.53 9.98 -39.36 -0.39 -1.92 15 18 C 0.09 1.19 6.70 -39.27 -0.26 0.92 15 19 O -0.50 -5.46 13.50 -19.45 -0.26 -5.72 15 20 C -0.10 -1.47 9.57 -39.05 -0.37 -1.85 15 21 O -0.35 -8.46 8.64 -16.70 -0.14 -8.61 15 22 H 0.27 7.43 8.31 -40.82 -0.34 7.09 15 23 H 0.08 1.66 8.14 -51.93 -0.42 1.23 15 24 H 0.09 1.93 7.79 -51.93 -0.40 1.52 15 25 H 0.14 2.22 7.76 -52.49 -0.41 1.81 15 26 H 0.13 1.23 8.06 -52.49 -0.42 0.80 15 27 H 0.13 1.14 8.06 -52.49 -0.42 0.72 15 28 H 0.39 2.31 9.06 45.56 0.41 2.72 15 29 H 0.14 2.20 7.70 -52.49 -0.40 1.80 15 LS Contribution 259.33 15.07 3.91 3.91 Total: -1.00 -31.72 259.33 -5.96 -37.68 By element: Atomic # 1 Polarization: 4.35 SS G_CDS: -2.03 Total: 2.33 kcal Atomic # 6 Polarization: -6.29 SS G_CDS: -3.05 Total: -9.34 kcal Atomic # 7 Polarization: -37.74 SS G_CDS: 0.13 Total: -37.61 kcal Atomic # 8 Polarization: -13.92 SS G_CDS: -0.41 Total: -14.33 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.51 Total: 17.36 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -31.72 -5.96 -37.68 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260513302.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.237 kcal (2) G-P(sol) polarization free energy of solvation -31.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds