Wall clock time and date at job start Mon Mar 30 2020 03:09:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00125 * 2 1 4 4 H 1.48503 * 109.46845 * 269.99927 * 3 2 1 5 5 H 1.48503 * 109.47399 * 29.99417 * 3 2 1 6 6 H 1.48498 * 109.47295 * 150.00023 * 3 2 1 7 7 C 1.37877 * 120.00069 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00099 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00216 * 179.97438 * 7 2 1 10 10 H 1.09007 * 110.91778 * 59.30413 * 9 7 2 11 11 C 1.54808 * 111.04869 * 183.29445 * 9 7 2 12 12 N 1.47586 * 102.00473 * 141.50285 * 11 9 7 13 13 C 1.29629 * 108.44497 * 344.94541 * 12 11 9 14 14 C 1.48013 * 123.08506 * 179.59108 * 13 12 11 15 15 C 1.39526 * 120.10700 * 179.74277 * 14 13 12 16 16 C 1.37987 * 119.96866 * 179.76492 * 15 14 13 17 17 C 1.38273 * 120.20055 * 0.51587 * 16 15 14 18 18 C 1.38802 * 120.21988 * 359.74165 * 17 16 15 19 19 O 1.35907 * 119.98597 * 180.02562 * 18 17 16 20 20 C 1.38516 * 120.02401 * 359.97438 * 18 17 16 21 21 O 1.34995 * 113.85074 * 359.63481 * 13 12 11 22 22 H 0.97000 * 119.99667 * 0.02562 * 1 2 3 23 23 H 1.08998 * 110.92590 * 259.67897 * 11 9 7 24 24 H 1.09004 * 110.92631 * 23.28986 * 11 9 7 25 25 H 1.07996 * 120.01565 * 0.02562 * 15 14 13 26 26 H 1.08002 * 119.90200 * 180.23732 * 16 15 14 27 27 H 1.08001 * 119.89304 * 179.71816 * 17 16 15 28 28 H 0.96696 * 114.00615 * 269.97448 * 19 18 17 29 29 H 1.07993 * 120.09817 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6528 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0000 10 1 3.9011 -0.6737 0.8750 11 6 4.0675 -2.6365 -0.0823 12 7 5.2318 -2.4664 -0.9731 13 6 5.1330 -1.3159 -1.5621 14 6 6.1387 -0.8115 -2.5238 15 6 5.9674 0.4353 -3.1262 16 6 6.9092 0.9050 -4.0186 17 6 8.0184 0.1389 -4.3266 18 6 8.1943 -1.1049 -3.7361 19 8 9.2865 -1.8536 -4.0418 20 6 7.2575 -1.5828 -2.8345 21 8 4.0292 -0.6194 -1.2176 22 1 -0.4849 0.8401 -0.0004 23 1 4.3779 -2.9908 0.9006 24 1 3.3344 -3.3118 -0.5237 25 1 5.1001 1.0343 -2.8910 26 1 6.7774 1.8719 -4.4814 27 1 8.7502 0.5094 -5.0292 28 1 9.1579 -2.4484 -4.7933 29 1 7.3934 -2.5501 -2.3741 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260513302.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:34 Heat of formation + Delta-G solvation = -52.902314 kcal Electronic energy + Delta-G solvation = -15617.519130 eV Core-core repulsion = 12891.531107 eV Total energy + Delta-G solvation = -2725.988023 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.94385 -40.48294 -37.65161 -35.16365 -34.48349 -33.00825 -31.09232 -30.53399 -27.04951 -24.49064 -23.63351 -22.78634 -21.38266 -19.38503 -19.24531 -17.72943 -17.27599 -17.00226 -16.72751 -16.32338 -15.78489 -15.19781 -14.91107 -14.75571 -14.30028 -13.96183 -13.74251 -13.16347 -13.01645 -12.93835 -12.72067 -12.35039 -12.02992 -11.79601 -11.54657 -11.09893 -11.01387 -10.41650 -9.79825 -9.49640 -8.52942 -6.71980 -0.26276 0.26177 1.27750 1.32551 1.37682 1.48177 2.18365 2.29564 2.69382 2.91475 3.20539 3.34983 3.92261 3.95690 4.11074 4.18188 4.21269 4.42992 4.52257 4.59979 4.77904 4.94668 5.00685 5.17678 5.32622 5.35775 5.43072 5.57483 5.76585 5.96993 6.40158 6.74761 6.86368 7.04924 8.60311 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.037202 B = 0.007333 C = 0.006342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.472233 B = 3817.675337 C = 4413.921310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.038 3.962 3 Si 0.953 3.047 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.258 1.258 7 C -0.537 4.537 8 H 0.054 0.946 9 C 0.142 3.858 10 H 0.060 0.940 11 C 0.013 3.987 12 N -0.561 5.561 13 C 0.324 3.676 14 C -0.046 4.046 15 C -0.104 4.104 16 C -0.098 4.098 17 C -0.115 4.115 18 C 0.102 3.898 19 O -0.502 6.502 20 C -0.105 4.105 21 O -0.365 6.365 22 H 0.277 0.723 23 H 0.106 0.894 24 H 0.077 0.923 25 H 0.123 0.877 26 H 0.167 0.833 27 H 0.167 0.833 28 H 0.413 0.587 29 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.855 2.412 -9.694 19.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.165 4.165 3 Si 0.777 3.223 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.182 1.182 7 C -0.573 4.573 8 H 0.073 0.927 9 C 0.087 3.913 10 H 0.078 0.922 11 C -0.117 4.117 12 N -0.297 5.297 13 C 0.101 3.899 14 C -0.047 4.047 15 C -0.124 4.124 16 C -0.116 4.116 17 C -0.134 4.134 18 C 0.057 3.943 19 O -0.315 6.315 20 C -0.126 4.126 21 O -0.269 6.269 22 H 0.086 0.914 23 H 0.124 0.876 24 H 0.095 0.905 25 H 0.141 0.859 26 H 0.184 0.816 27 H 0.184 0.816 28 H 0.272 0.728 29 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 17.265 2.179 -9.171 19.671 hybrid contribution -1.358 0.420 0.206 1.436 sum 15.907 2.599 -8.965 18.444 Atomic orbital electron populations 1.69997 1.08060 1.29230 1.48355 1.25931 0.95584 1.03382 0.91580 0.85594 0.78915 0.78159 0.79672 1.18792 1.20196 1.18182 1.21020 0.88430 0.94475 1.53405 0.92740 1.22145 0.94649 0.91795 0.82707 0.92246 1.23840 0.91738 0.97239 0.98857 1.74841 1.23336 1.16173 1.15400 1.23998 0.85696 0.87944 0.92227 1.17847 0.93015 0.96371 0.97492 1.21489 1.00284 0.94155 0.96472 1.21305 0.92581 1.01191 0.96496 1.21918 0.98143 0.93616 0.99676 1.18283 0.86983 0.92476 0.96528 1.84786 1.33058 1.57650 1.56048 1.21488 0.92042 1.00388 0.98634 1.87176 1.37967 1.57940 1.43820 0.91395 0.87601 0.90529 0.85854 0.81575 0.81574 0.72774 0.84851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.74 13.96 21.45 0.30 -55.44 15 2 C 0.04 2.21 5.47 84.65 0.46 2.68 15 3 Si 0.95 45.14 26.54 68.60 1.82 46.96 15 4 H -0.26 -12.11 7.11 99.48 0.71 -11.40 15 5 H -0.28 -12.40 7.11 99.48 0.71 -11.69 15 6 H -0.26 -11.77 6.53 99.48 0.65 -11.12 15 7 C -0.54 -31.07 9.40 25.60 0.24 -30.83 15 8 H 0.05 3.41 7.88 -2.91 -0.02 3.39 15 9 C 0.14 7.08 2.88 30.47 0.09 7.17 15 10 H 0.06 2.92 7.21 -2.38 -0.02 2.90 15 11 C 0.01 0.56 7.67 86.79 0.67 1.22 15 12 N -0.56 -24.07 11.14 -450.83 -5.02 -29.10 15 13 C 0.32 13.81 7.59 87.61 0.67 14.48 15 14 C -0.05 -1.56 5.87 -20.10 -0.12 -1.68 15 15 C -0.10 -3.04 9.67 22.52 0.22 -2.83 15 16 C -0.10 -1.98 10.03 22.22 0.22 -1.76 15 17 C -0.11 -2.07 9.98 22.41 0.22 -1.85 15 18 C 0.10 2.26 6.70 22.47 0.15 2.41 15 19 O -0.50 -9.07 13.50 -92.51 -1.25 -10.32 15 20 C -0.11 -3.05 9.57 22.62 0.22 -2.83 15 21 O -0.36 -17.78 8.64 -82.66 -0.71 -18.49 15 22 H 0.28 15.46 8.31 -92.71 -0.77 14.69 15 23 H 0.11 4.16 8.14 -2.39 -0.02 4.14 15 24 H 0.08 3.52 7.79 -2.39 -0.02 3.50 15 25 H 0.12 3.89 7.76 -2.91 -0.02 3.87 15 26 H 0.17 2.21 8.06 -2.91 -0.02 2.19 15 27 H 0.17 1.85 8.06 -2.91 -0.02 1.82 15 28 H 0.41 3.24 9.06 -74.06 -0.67 2.57 15 29 H 0.13 4.03 7.70 -2.91 -0.02 4.01 15 Total: -1.00 -69.98 259.33 -1.38 -71.36 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: 0.45 Total: 8.85 kcal Atomic # 6 Polarization: -16.85 SS G_CDS: 3.04 Total: -13.82 kcal Atomic # 7 Polarization: -79.81 SS G_CDS: -4.73 Total: -84.54 kcal Atomic # 8 Polarization: -26.85 SS G_CDS: -1.96 Total: -28.81 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 1.82 Total: 46.96 kcal Total: -69.98 -1.38 -71.36 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260513302.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.456 kcal (2) G-P(sol) polarization free energy of solvation -69.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds