Wall clock time and date at job start Mon Mar 30 2020 03:36:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35512 * 117.00007 * 2 1 4 4 C 1.38743 * 119.85874 * 359.97438 * 3 2 1 5 5 C 1.38157 * 120.29693 * 179.70339 * 4 3 2 6 6 O 1.35530 * 119.99195 * 180.28069 * 5 4 3 7 7 C 1.42901 * 117.00315 * 359.97438 * 6 5 4 8 8 C 1.41619 * 120.00536 * 0.29723 * 5 4 3 9 9 C 1.41096 * 120.14071 * 180.02562 * 8 5 4 10 10 H 1.07999 * 120.00251 * 334.82323 * 9 8 5 11 11 C 1.39850 * 120.00221 * 154.82343 * 9 8 5 12 12 N 1.30932 * 120.00105 * 342.26479 * 11 9 8 13 13 Si 1.86807 * 120.00255 * 162.26855 * 11 9 8 14 14 H 1.48502 * 109.47010 * 94.64322 * 13 11 9 15 15 H 1.48501 * 109.47033 * 214.64223 * 13 11 9 16 16 H 1.48496 * 109.46926 * 334.64167 * 13 11 9 17 17 C 1.40367 * 119.72268 * 359.97438 * 8 5 4 18 18 C 1.39026 * 119.70122 * 359.97438 * 17 8 5 19 19 C 1.43204 * 120.00415 * 180.02562 * 18 17 8 20 20 N 3.52693 * 165.56129 * 181.03787 * 2 1 3 21 21 H 1.08998 * 109.47107 * 179.97438 * 1 2 3 22 22 H 1.08991 * 109.47360 * 300.00337 * 1 2 3 23 23 H 1.09000 * 109.46979 * 60.00319 * 1 2 3 24 24 H 1.07992 * 119.85080 * 359.97438 * 4 3 2 25 25 H 1.09008 * 109.46969 * 180.02562 * 7 6 5 26 26 H 1.08990 * 109.47250 * 300.00421 * 7 6 5 27 27 H 1.08996 * 109.47029 * 60.00756 * 7 6 5 28 28 H 0.97006 * 120.00557 * 180.02562 * 12 11 9 29 29 H 1.08002 * 120.15031 * 179.97438 * 17 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2074 0.0000 4 6 1.2857 2.3691 -0.0005 5 6 1.9034 3.6049 0.0056 6 8 1.1564 4.7357 0.0108 7 6 -0.2635 4.5754 0.0090 8 6 3.3171 3.6900 0.0062 9 6 3.9510 4.9505 0.0130 10 1 3.4374 5.8154 -0.3802 11 6 5.2443 5.0801 0.5290 12 7 5.7349 4.1486 1.3076 13 14 6.2720 6.5820 0.1077 14 1 6.1176 7.6028 1.1751 15 1 7.7004 6.1902 0.0003 16 1 5.8150 7.1470 -1.1874 17 6 4.0850 2.5150 0.0010 18 6 3.4510 1.2777 -0.0041 19 6 4.2281 0.0749 -0.0089 20 7 4.8445 -0.8793 -0.0159 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 0.2075 2.3072 -0.0014 25 1 -0.7399 5.5558 0.0131 26 1 -0.5663 4.0285 -0.8839 27 1 -0.5675 4.0196 0.8960 28 1 6.6319 4.2386 1.6658 29 1 5.1635 2.5718 0.0010 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260539485.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:28 Heat of formation + Delta-G solvation = -27.641916 kcal Electronic energy + Delta-G solvation = -15800.883834 eV Core-core repulsion = 13075.991185 eV Total energy + Delta-G solvation = -2724.892650 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.48753 -37.97610 -36.24914 -35.17945 -33.34067 -29.95276 -29.35300 -27.35057 -26.65597 -24.71914 -22.07880 -21.10028 -18.44172 -17.64269 -16.62363 -16.08208 -15.33495 -15.20758 -14.77504 -14.30810 -14.00438 -13.59407 -13.00948 -12.85375 -12.75400 -12.10144 -11.75448 -11.70270 -11.41675 -11.30865 -11.07244 -10.92856 -10.74198 -10.63712 -10.27805 -9.91590 -9.61104 -9.10309 -7.67042 -7.16912 -6.81282 -4.30882 2.05852 2.54984 3.04850 3.08596 3.14626 3.65371 3.90124 3.95077 4.01131 4.20085 4.60024 5.04952 5.33884 5.44133 5.52501 5.54734 5.62479 5.65463 5.79177 5.88503 6.17565 6.42778 6.83970 7.01885 7.08747 7.26317 7.45740 7.77160 8.08101 8.14315 8.41126 8.56565 8.68168 8.82064 10.13335 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.022250 B = 0.009983 C = 0.007050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.097277 B = 2804.012812 C = 3970.443329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.324 6.324 3 C 0.079 3.921 4 C -0.261 4.261 5 C 0.079 3.921 6 O -0.303 6.303 7 C 0.031 3.969 8 C 0.070 3.930 9 C -0.442 4.442 10 H 0.086 0.914 11 C 0.072 3.928 12 N -0.799 5.799 13 Si 0.911 3.089 14 H -0.271 1.271 15 H -0.276 1.276 16 H -0.260 1.260 17 C -0.070 4.070 18 C -0.070 4.070 19 C 0.294 3.706 20 N -0.478 5.478 21 H 0.086 0.914 22 H 0.047 0.953 23 H 0.046 0.954 24 H 0.116 0.884 25 H 0.086 0.914 26 H 0.043 0.957 27 H 0.043 0.957 28 H 0.283 0.717 29 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.516 1.455 -1.700 8.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.238 6.238 3 C 0.032 3.968 4 C -0.280 4.280 5 C 0.033 3.967 6 O -0.216 6.216 7 C -0.065 4.065 8 C 0.067 3.933 9 C -0.471 4.471 10 H 0.105 0.895 11 C -0.145 4.145 12 N -0.425 5.425 13 Si 0.735 3.265 14 H -0.196 1.196 15 H -0.201 1.201 16 H -0.183 1.183 17 C -0.093 4.093 18 C -0.075 4.075 19 C -0.019 4.019 20 N -0.156 5.156 21 H 0.105 0.895 22 H 0.065 0.935 23 H 0.065 0.935 24 H 0.134 0.866 25 H 0.105 0.895 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.094 0.906 29 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -7.215 -0.051 -1.566 7.383 hybrid contribution -0.352 0.973 0.015 1.035 sum -7.567 0.922 -1.551 7.779 Atomic orbital electron populations 1.22809 0.80146 1.02413 1.00608 1.85889 1.19887 1.27894 1.90111 1.18082 0.89655 0.83116 1.05982 1.20613 0.98418 0.91863 1.17135 1.19176 0.91163 0.83395 1.02980 1.85999 1.16534 1.29946 1.89101 1.22835 0.81267 1.02248 1.00180 1.16838 0.86678 0.94201 0.95560 1.19306 0.98292 0.94853 1.34674 0.89545 1.25888 0.98034 0.97956 0.92643 1.69799 1.16956 1.33567 1.22193 0.86249 0.78872 0.81237 0.80152 1.19594 1.20080 1.18338 1.21076 1.00172 0.87603 1.00421 1.15287 0.87631 0.88040 1.16509 1.25803 0.92049 0.92346 0.91715 1.81020 1.10654 1.11475 1.12425 0.89506 0.93476 0.93504 0.86579 0.89504 0.93879 0.93792 0.90572 0.84013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.50 9.80 101.05 0.99 1.49 15 2 O -0.32 -6.28 9.90 -18.23 -0.18 -6.46 15 3 C 0.08 1.68 6.71 -38.41 -0.26 1.42 15 4 C -0.26 -5.20 7.99 -39.42 -0.31 -5.51 15 5 C 0.08 1.76 6.72 -38.32 -0.26 1.50 15 6 O -0.30 -6.18 9.76 -18.28 -0.18 -6.35 15 7 C 0.03 0.44 9.80 101.05 0.99 1.43 15 8 C 0.07 1.72 5.58 -106.72 -0.60 1.13 15 9 C -0.44 -10.98 8.70 -37.90 -0.33 -11.30 15 10 H 0.09 2.11 7.64 -52.49 -0.40 1.71 15 11 C 0.07 1.71 5.13 -17.33 -0.09 1.62 15 12 N -0.80 -19.68 10.99 55.54 0.61 -19.07 15 13 Si 0.91 17.97 29.60 -169.99 -5.03 12.94 15 14 H -0.27 -5.30 7.11 56.52 0.40 -4.90 15 15 H -0.28 -5.37 7.11 56.52 0.40 -4.97 15 16 H -0.26 -5.08 7.11 56.52 0.40 -4.68 15 17 C -0.07 -1.70 8.37 -38.49 -0.32 -2.02 15 18 C -0.07 -1.61 5.75 -106.69 -0.61 -2.22 15 19 C 0.29 6.79 14.84 -22.47 -0.33 6.46 15 20 N -0.48 -11.23 18.54 41.84 0.78 -10.46 15 21 H 0.09 0.97 8.14 -51.93 -0.42 0.55 15 22 H 0.05 0.60 7.64 -51.93 -0.40 0.21 15 23 H 0.05 0.59 7.64 -51.93 -0.40 0.19 15 24 H 0.12 1.93 4.43 -52.49 -0.23 1.69 15 25 H 0.09 1.01 8.14 -51.92 -0.42 0.59 15 26 H 0.04 0.56 7.65 -51.93 -0.40 0.16 15 27 H 0.04 0.59 7.65 -51.93 -0.40 0.19 15 28 H 0.28 6.41 8.30 -40.82 -0.34 6.07 15 29 H 0.14 3.56 6.19 -52.49 -0.32 3.24 15 LS Contribution 262.90 15.07 3.96 3.96 Total: -1.00 -27.70 262.90 -3.70 -31.40 By element: Atomic # 1 Polarization: 2.58 SS G_CDS: -2.53 Total: 0.06 kcal Atomic # 6 Polarization: -4.89 SS G_CDS: -1.13 Total: -6.02 kcal Atomic # 7 Polarization: -30.91 SS G_CDS: 1.39 Total: -29.52 kcal Atomic # 8 Polarization: -12.45 SS G_CDS: -0.36 Total: -12.81 kcal Atomic # 14 Polarization: 17.97 SS G_CDS: -5.03 Total: 12.94 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -27.70 -3.70 -31.40 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260539485.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.761 kcal (2) G-P(sol) polarization free energy of solvation -27.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds