Wall clock time and date at job start Mon Mar 30 2020 03:36:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35512 * 117.00007 * 2 1 4 4 C 1.38743 * 119.85874 * 359.97438 * 3 2 1 5 5 C 1.38157 * 120.29693 * 179.70339 * 4 3 2 6 6 O 1.35530 * 119.99195 * 180.28069 * 5 4 3 7 7 C 1.42901 * 117.00315 * 359.97438 * 6 5 4 8 8 C 1.41619 * 120.00536 * 0.29723 * 5 4 3 9 9 C 1.41096 * 120.14071 * 180.02562 * 8 5 4 10 10 H 1.07999 * 120.00251 * 334.82323 * 9 8 5 11 11 C 1.39850 * 120.00221 * 154.82343 * 9 8 5 12 12 N 1.30932 * 120.00105 * 342.26479 * 11 9 8 13 13 Si 1.86807 * 120.00255 * 162.26855 * 11 9 8 14 14 H 1.48502 * 109.47010 * 94.64322 * 13 11 9 15 15 H 1.48501 * 109.47033 * 214.64223 * 13 11 9 16 16 H 1.48496 * 109.46926 * 334.64167 * 13 11 9 17 17 C 1.40367 * 119.72268 * 359.97438 * 8 5 4 18 18 C 1.39026 * 119.70122 * 359.97438 * 17 8 5 19 19 C 1.43204 * 120.00415 * 180.02562 * 18 17 8 20 20 N 3.52693 * 165.56129 * 181.03787 * 2 1 3 21 21 H 1.08998 * 109.47107 * 179.97438 * 1 2 3 22 22 H 1.08991 * 109.47360 * 300.00337 * 1 2 3 23 23 H 1.09000 * 109.46979 * 60.00319 * 1 2 3 24 24 H 1.07992 * 119.85080 * 359.97438 * 4 3 2 25 25 H 1.09008 * 109.46969 * 180.02562 * 7 6 5 26 26 H 1.08990 * 109.47250 * 300.00421 * 7 6 5 27 27 H 1.08996 * 109.47029 * 60.00756 * 7 6 5 28 28 H 0.97006 * 120.00557 * 180.02562 * 12 11 9 29 29 H 1.08002 * 120.15031 * 179.97438 * 17 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2074 0.0000 4 6 1.2857 2.3691 -0.0005 5 6 1.9034 3.6049 0.0056 6 8 1.1564 4.7357 0.0108 7 6 -0.2635 4.5754 0.0090 8 6 3.3171 3.6900 0.0062 9 6 3.9510 4.9505 0.0130 10 1 3.4374 5.8154 -0.3802 11 6 5.2443 5.0801 0.5290 12 7 5.7349 4.1486 1.3076 13 14 6.2720 6.5820 0.1077 14 1 6.1176 7.6028 1.1751 15 1 7.7004 6.1902 0.0003 16 1 5.8150 7.1470 -1.1874 17 6 4.0850 2.5150 0.0010 18 6 3.4510 1.2777 -0.0041 19 6 4.2281 0.0749 -0.0089 20 7 4.8445 -0.8793 -0.0159 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 0.2075 2.3072 -0.0014 25 1 -0.7399 5.5558 0.0131 26 1 -0.5663 4.0285 -0.8839 27 1 -0.5675 4.0196 0.8960 28 1 6.6319 4.2386 1.6658 29 1 5.1635 2.5718 0.0010 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260539485.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:28 Heat of formation + Delta-G solvation = -44.357243 kcal Electronic energy + Delta-G solvation = -15801.608665 eV Core-core repulsion = 13075.991185 eV Total energy + Delta-G solvation = -2725.617481 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.09799 -39.49745 -37.93704 -36.94897 -35.06495 -31.62941 -31.04063 -28.60138 -28.01885 -26.35945 -23.75849 -22.76035 -20.13871 -19.18480 -18.35373 -17.63855 -16.96999 -16.63227 -16.11476 -15.90396 -15.37505 -15.23621 -14.68963 -14.59659 -14.29393 -13.74733 -13.53188 -13.26949 -12.90716 -12.77110 -12.56087 -12.35519 -12.16577 -12.13239 -11.91920 -11.57066 -11.21062 -10.79984 -9.34121 -8.90924 -8.54748 -6.12918 0.29516 0.85172 1.45818 1.49451 1.60416 1.82569 2.15722 2.29138 2.59108 2.76006 2.83354 3.28251 3.57969 4.13807 4.35663 4.45345 4.49628 4.54790 4.67590 4.74761 4.77863 4.82825 5.11811 5.26291 5.34808 5.52702 5.72662 6.00408 6.38492 6.52445 6.65121 6.79776 6.93091 7.11792 8.41470 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.022250 B = 0.009983 C = 0.007050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.097277 B = 2804.012812 C = 3970.443329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.341 6.341 3 C 0.101 3.899 4 C -0.258 4.258 5 C 0.091 3.909 6 O -0.325 6.325 7 C 0.018 3.982 8 C 0.035 3.965 9 C -0.474 4.474 10 H 0.080 0.920 11 C 0.034 3.966 12 N -0.835 5.835 13 Si 0.976 3.024 14 H -0.266 1.266 15 H -0.272 1.272 16 H -0.257 1.257 17 C -0.083 4.083 18 C -0.094 4.094 19 C 0.299 3.701 20 N -0.492 5.492 21 H 0.116 0.884 22 H 0.061 0.939 23 H 0.064 0.936 24 H 0.157 0.843 25 H 0.115 0.885 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.287 0.713 29 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.827 1.629 -1.968 11.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.255 6.255 3 C 0.053 3.947 4 C -0.277 4.277 5 C 0.044 3.956 6 O -0.238 6.238 7 C -0.077 4.077 8 C 0.032 3.968 9 C -0.504 4.504 10 H 0.098 0.902 11 C -0.179 4.179 12 N -0.463 5.463 13 Si 0.798 3.202 14 H -0.191 1.191 15 H -0.197 1.197 16 H -0.181 1.181 17 C -0.105 4.105 18 C -0.099 4.099 19 C -0.013 4.013 20 N -0.171 5.171 21 H 0.134 0.866 22 H 0.080 0.920 23 H 0.083 0.917 24 H 0.174 0.826 25 H 0.133 0.867 26 H 0.080 0.920 27 H 0.076 0.924 28 H 0.097 0.903 29 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -9.566 0.114 -1.837 9.742 hybrid contribution 0.067 0.816 0.092 0.824 sum -9.499 0.930 -1.745 9.703 Atomic orbital electron populations 1.23263 0.76858 1.05046 1.02104 1.85890 1.23258 1.26826 1.89525 1.18202 0.89178 0.84394 1.02906 1.20889 1.00329 0.90337 1.16159 1.19298 0.90810 0.84810 1.00717 1.85976 1.19664 1.29589 1.88595 1.23268 0.77917 1.04814 1.01679 1.17126 0.88386 0.94250 0.97037 1.19423 0.99533 0.94960 1.36447 0.90178 1.26607 0.98667 1.00568 0.92032 1.69862 1.17459 1.35474 1.23490 0.85270 0.77240 0.77887 0.79847 1.19055 1.19696 1.18104 1.20847 0.99402 0.88358 1.01930 1.15367 0.88845 0.87381 1.18316 1.25906 0.91816 0.92273 0.91311 1.81000 1.10859 1.11966 1.13241 0.86611 0.92020 0.91739 0.82558 0.86667 0.92010 0.92364 0.90282 0.86036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.50 9.80 113.37 1.11 1.61 15 2 O -0.34 -12.29 9.90 -88.14 -0.87 -13.16 15 3 C 0.10 4.13 6.71 23.03 0.15 4.29 15 4 C -0.26 -9.60 7.99 22.37 0.18 -9.42 15 5 C 0.09 3.93 6.72 23.09 0.16 4.09 15 6 O -0.32 -12.69 9.76 -88.34 -0.86 -13.55 15 7 C 0.02 0.44 9.80 113.37 1.11 1.56 15 8 C 0.03 1.74 5.58 -21.23 -0.12 1.62 15 9 C -0.47 -24.23 8.70 23.36 0.20 -24.03 15 10 H 0.08 4.03 7.64 -2.91 -0.02 4.01 15 11 C 0.03 1.68 5.13 85.22 0.44 2.12 15 12 N -0.84 -42.75 10.99 21.81 0.24 -42.51 15 13 Si 0.98 37.60 29.60 68.60 2.03 39.63 15 14 H -0.27 -9.91 7.11 99.48 0.71 -9.20 15 15 H -0.27 -10.19 7.11 99.48 0.71 -9.48 15 16 H -0.26 -9.68 7.11 99.48 0.71 -8.97 15 17 C -0.08 -4.14 8.37 22.98 0.19 -3.95 15 18 C -0.09 -4.36 5.75 -21.20 -0.12 -4.48 15 19 C 0.30 13.98 14.84 88.33 1.31 15.29 15 20 N -0.49 -23.28 18.54 19.00 0.35 -22.93 15 21 H 0.12 2.06 8.14 -2.39 -0.02 2.04 15 22 H 0.06 1.28 7.64 -2.39 -0.02 1.27 15 23 H 0.06 1.30 7.64 -2.39 -0.02 1.29 15 24 H 0.16 4.44 4.43 -2.91 -0.01 4.43 15 25 H 0.12 2.23 8.14 -2.38 -0.02 2.21 15 26 H 0.06 1.33 7.65 -2.39 -0.02 1.31 15 27 H 0.06 1.31 7.65 -2.39 -0.02 1.29 15 28 H 0.29 13.48 8.30 -92.70 -0.77 12.71 15 29 H 0.12 6.47 6.19 -2.91 -0.02 6.46 15 Total: -1.00 -61.19 262.90 6.69 -54.50 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: 1.19 Total: 9.35 kcal Atomic # 6 Polarization: -15.93 SS G_CDS: 4.61 Total: -11.32 kcal Atomic # 7 Polarization: -66.04 SS G_CDS: 0.59 Total: -65.44 kcal Atomic # 8 Polarization: -24.98 SS G_CDS: -1.73 Total: -26.71 kcal Atomic # 14 Polarization: 37.60 SS G_CDS: 2.03 Total: 39.63 kcal Total: -61.19 6.69 -54.50 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260539485.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.140 kcal (2) G-P(sol) polarization free energy of solvation -61.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds