Wall clock time and date at job start Mon Mar 30 2020 02:54:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30679 * 1 3 3 Si 1.86802 * 119.99934 * 2 1 4 4 H 1.48503 * 109.47131 * 270.00330 * 3 2 1 5 5 H 1.48497 * 109.47170 * 29.99967 * 3 2 1 6 6 H 1.48498 * 109.46984 * 149.99984 * 3 2 1 7 7 C 1.40091 * 119.99903 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99799 * 179.97438 * 7 2 1 9 9 C 1.41336 * 120.00279 * 359.97438 * 7 2 1 10 10 N 1.33923 * 118.36918 * 359.97438 * 9 7 2 11 11 C 1.32315 * 121.22576 * 180.02562 * 10 9 7 12 12 N 1.37913 * 121.11576 * 179.97438 * 11 10 9 13 13 C 1.46375 * 117.76344 * 359.97438 * 11 10 9 14 14 C 1.39482 * 122.13253 * 179.97438 * 13 11 10 15 15 C 1.36656 * 119.55297 * 180.02562 * 14 13 11 16 16 C 1.39457 * 120.90550 * 0.02562 * 15 14 13 17 17 F 1.35098 * 119.49992 * 180.02562 * 16 15 14 18 18 C 1.36575 * 121.00355 * 0.02562 * 16 15 14 19 19 C 1.40450 * 119.50670 * 359.97438 * 18 16 15 20 20 N 1.32836 * 118.37308 * 180.02562 * 9 7 2 21 21 H 0.96998 * 120.00158 * 359.97438 * 1 2 3 22 22 H 0.96999 * 119.99689 * 179.97438 * 12 11 10 23 23 H 0.96993 * 120.00285 * 0.02562 * 12 11 10 24 24 H 1.08002 * 120.22195 * 0.02562 * 14 13 11 25 25 H 1.08000 * 119.54585 * 179.97438 * 15 14 13 26 26 H 1.08005 * 120.24521 * 179.70749 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6178 0.0000 4 1 2.4882 2.0465 -1.4001 5 1 1.4382 2.6527 0.7000 6 1 3.5383 1.4402 0.7000 7 6 2.0072 -1.2132 -0.0005 8 1 3.0873 -1.2132 -0.0010 9 6 1.3006 -2.4373 -0.0005 10 7 -0.0381 -2.3992 0.0005 11 6 -0.7559 -3.5107 0.0011 12 7 -2.1344 -3.4689 0.0027 13 6 -0.0378 -4.7862 -0.0001 14 6 -0.7030 -6.0121 0.0009 15 6 0.0204 -7.1715 0.0003 16 6 1.4147 -7.1458 -0.0008 17 9 2.1015 -8.3092 -0.0019 18 6 2.0965 -5.9624 -0.0007 19 6 1.3827 -4.7528 -0.0001 20 7 1.9972 -3.5683 -0.0005 21 1 -0.4850 0.8400 0.0004 22 1 -2.6446 -4.2938 0.0027 23 1 -2.5937 -2.6146 0.0031 24 1 -1.7825 -6.0449 0.0022 25 1 -0.4948 -8.1207 0.0015 26 1 3.1765 -5.9568 0.0032 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260553068.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:40 Heat of formation + Delta-G solvation = -5.411808 kcal Electronic energy + Delta-G solvation = -15373.450227 eV Core-core repulsion = 12558.353994 eV Total energy + Delta-G solvation = -2815.096234 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.066 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.86143 -41.17715 -37.96136 -36.47874 -35.24669 -32.46869 -31.19598 -30.71239 -28.22787 -24.39977 -24.16341 -22.57021 -20.53805 -19.16635 -18.64257 -17.77075 -17.10792 -16.60006 -16.55036 -16.37958 -15.96755 -15.23301 -14.82785 -14.73838 -14.10854 -13.64937 -13.10159 -13.07797 -12.77625 -12.75708 -12.45601 -12.27044 -11.95949 -11.11975 -10.88959 -10.10926 -9.65057 -9.32259 -8.62976 -8.48228 -6.76902 -0.08269 0.30365 1.37145 1.41361 1.55684 1.59255 2.19667 2.28371 2.72361 2.87420 3.31310 3.85917 3.90349 3.96362 4.19428 4.27131 4.48720 4.78993 4.93244 5.10758 5.19420 5.30269 5.38847 5.59974 6.04853 6.08349 6.26263 6.51679 6.66149 6.81506 7.39885 8.22833 8.39220 Molecular weight = 233.07amu Principal moments of inertia in cm(-1) A = 0.040138 B = 0.007474 C = 0.006315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.432882 B = 3745.201982 C = 4432.793162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.725 5.725 2 C 0.026 3.974 3 Si 1.000 3.000 4 H -0.260 1.260 5 H -0.258 1.258 6 H -0.260 1.260 7 C -0.415 4.415 8 H 0.089 0.911 9 C 0.398 3.602 10 N -0.572 5.572 11 C 0.444 3.556 12 N -0.810 5.810 13 C -0.301 4.301 14 C 0.002 3.998 15 C -0.239 4.239 16 C 0.150 3.850 17 F -0.144 7.144 18 C -0.223 4.223 19 C 0.221 3.779 20 N -0.683 5.683 21 H 0.288 0.712 22 H 0.418 0.582 23 H 0.410 0.590 24 H 0.163 0.837 25 H 0.161 0.839 26 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.350 -4.470 0.014 7.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.346 5.346 2 C -0.200 4.200 3 Si 0.819 3.181 4 H -0.184 1.184 5 H -0.182 1.182 6 H -0.184 1.184 7 C -0.449 4.449 8 H 0.107 0.893 9 C 0.163 3.837 10 N -0.300 5.300 11 C 0.179 3.821 12 N -0.358 5.358 13 C -0.312 4.312 14 C -0.018 4.018 15 C -0.259 4.259 16 C 0.128 3.872 17 F -0.123 7.123 18 C -0.245 4.245 19 C 0.086 3.914 20 N -0.411 5.411 21 H 0.099 0.901 22 H 0.251 0.749 23 H 0.241 0.759 24 H 0.180 0.820 25 H 0.178 0.822 26 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -5.875 -3.419 0.019 6.797 hybrid contribution -0.045 -0.343 -0.010 0.346 sum -5.920 -3.762 0.010 7.014 Atomic orbital electron populations 1.70155 1.08742 1.29976 1.25702 1.27070 0.96033 1.04443 0.92418 0.84945 0.78826 0.74617 0.79749 1.18413 1.18187 1.18376 1.19854 0.95076 0.89017 1.40974 0.89332 1.19927 0.85134 0.91858 0.86818 1.69013 1.07767 1.26197 1.27015 1.20457 0.87433 0.88629 0.85586 1.41664 1.00629 1.12473 1.80990 1.19994 0.94975 0.94582 1.21684 1.20679 1.00412 0.89265 0.91444 1.20687 0.90692 1.00483 1.14058 1.17419 0.90809 0.79886 0.99093 1.91440 1.80293 1.46795 1.93780 1.20320 1.00019 0.90052 1.14109 1.18693 0.89900 0.92634 0.90196 1.68895 1.39390 0.97472 1.35317 0.90115 0.74924 0.75873 0.81998 0.82181 0.85942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -35.93 11.35 21.85 0.25 -35.69 15 2 C 0.03 1.27 5.50 85.31 0.47 1.74 15 3 Si 1.00 36.46 29.56 68.60 2.03 38.49 15 4 H -0.26 -9.13 7.11 99.48 0.71 -8.42 15 5 H -0.26 -8.64 7.11 99.48 0.71 -7.93 15 6 H -0.26 -9.48 7.11 99.48 0.71 -8.77 15 7 C -0.42 -23.17 9.33 23.48 0.22 -22.95 15 8 H 0.09 4.86 7.85 -2.91 -0.02 4.84 15 9 C 0.40 23.22 7.34 135.13 0.99 24.22 15 10 N -0.57 -30.67 7.76 -187.04 -1.45 -32.12 15 11 C 0.44 19.73 8.05 135.36 1.09 20.82 15 12 N -0.81 -25.13 9.00 -51.25 -0.46 -25.59 15 13 C -0.30 -13.14 5.90 -19.91 -0.12 -13.26 15 14 C 0.00 0.07 9.58 22.20 0.21 0.28 15 15 C -0.24 -7.47 9.94 22.19 0.22 -7.25 15 16 C 0.15 5.56 7.24 22.17 0.16 5.72 15 17 F -0.14 -4.98 17.24 44.97 0.78 -4.20 15 18 C -0.22 -9.90 9.99 22.42 0.22 -9.68 15 19 C 0.22 11.20 6.63 40.39 0.27 11.47 15 20 N -0.68 -39.36 10.28 -188.04 -1.93 -41.29 15 21 H 0.29 12.50 8.29 -92.71 -0.77 11.73 15 22 H 0.42 9.13 7.25 -92.71 -0.67 8.45 15 23 H 0.41 12.19 8.95 -92.71 -0.83 11.36 15 24 H 0.16 3.55 6.71 -2.91 -0.02 3.53 15 25 H 0.16 3.72 8.06 -2.91 -0.02 3.70 15 26 H 0.12 5.39 8.06 -2.91 -0.02 5.37 15 Total: -1.00 -68.14 241.18 2.70 -65.44 By element: Atomic # 1 Polarization: 24.09 SS G_CDS: -0.24 Total: 23.85 kcal Atomic # 6 Polarization: 7.37 SS G_CDS: 3.74 Total: 11.11 kcal Atomic # 7 Polarization: -131.09 SS G_CDS: -3.60 Total: -134.69 kcal Atomic # 9 Polarization: -4.98 SS G_CDS: 0.78 Total: -4.20 kcal Atomic # 14 Polarization: 36.46 SS G_CDS: 2.03 Total: 38.49 kcal Total: -68.14 2.70 -65.44 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260553068.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.024 kcal (2) G-P(sol) polarization free energy of solvation -68.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds