Wall clock time and date at job start Mon Mar 30 2020 02:56:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86805 * 120.00048 * 2 1 4 4 H 1.48500 * 109.46791 * 270.00018 * 3 2 1 5 5 H 1.48503 * 109.46658 * 29.99525 * 3 2 1 6 6 H 1.48498 * 109.47324 * 149.99923 * 3 2 1 7 7 C 1.37882 * 120.00397 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00272 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99602 * 0.02562 * 7 2 1 10 10 N 1.46504 * 109.46889 * 179.97438 * 9 7 2 11 11 C 1.34373 * 123.90694 * 269.96180 * 10 9 7 12 12 O 1.21301 * 126.44928 * 359.97438 * 11 10 9 13 13 C 1.51390 * 107.10169 * 180.02562 * 11 10 9 14 14 C 1.51142 * 104.09645 * 0.02562 * 13 11 10 15 15 C 1.37807 * 132.79990 * 180.02562 * 14 13 11 16 16 C 1.38359 * 120.01488 * 179.77032 * 15 14 13 17 17 C 1.38284 * 119.87650 * 0.49776 * 16 15 14 18 18 C 1.38364 * 120.30225 * 359.48508 * 17 16 15 19 19 O 1.35975 * 119.97688 * 180.27609 * 18 17 16 20 20 C 1.38729 * 106.36620 * 359.97438 * 14 13 11 21 21 H 0.96992 * 120.00185 * 0.02562 * 1 2 3 22 22 H 1.09007 * 109.47243 * 60.00331 * 9 7 2 23 23 H 1.08997 * 109.47287 * 299.99355 * 9 7 2 24 24 H 1.09000 * 110.50251 * 118.65086 * 13 11 10 25 25 H 1.08994 * 110.50654 * 241.34710 * 13 11 10 26 26 H 1.07996 * 119.99257 * 0.02562 * 15 14 13 27 27 H 1.08003 * 120.06740 * 180.28380 * 16 15 14 28 28 H 1.08002 * 119.85221 * 179.76546 * 17 16 15 29 29 H 0.96707 * 114.00294 * 90.00363 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2031 -3.6127 0.0005 11 6 2.6897 -4.1829 -1.1147 12 8 2.4238 -3.8737 -2.2571 13 6 3.6312 -5.2846 -0.6770 14 6 3.5848 -5.2303 0.8327 15 6 4.2126 -5.9642 1.8158 16 6 3.9760 -5.6802 3.1491 17 6 3.1010 -4.6660 3.4926 18 6 2.4688 -3.9263 2.5089 19 8 1.6140 -2.9268 2.8542 20 6 2.7095 -4.2051 1.1603 21 1 -0.4850 0.8400 -0.0004 22 1 0.6248 -2.5571 -0.8898 23 1 0.6242 -2.5568 0.8903 24 1 3.2793 -6.2522 -1.0348 25 1 4.6416 -5.0883 -1.0356 26 1 4.8925 -6.7585 1.5454 27 1 4.4711 -6.2518 3.9202 28 1 2.9138 -4.4471 4.5335 29 1 2.0381 -2.0635 2.9542 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260553135.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:31 Heat of formation + Delta-G solvation = -43.095333 kcal Electronic energy + Delta-G solvation = -16143.022082 eV Core-core repulsion = 13417.459322 eV Total energy + Delta-G solvation = -2725.562760 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.95471 -38.23477 -36.34341 -35.28284 -33.16908 -31.48704 -29.06438 -27.77177 -26.76619 -23.19679 -21.96487 -21.39260 -19.57051 -17.52263 -16.82862 -16.48091 -15.88784 -15.38088 -15.15233 -14.66622 -14.15957 -14.02627 -13.10057 -12.92941 -12.75166 -12.33044 -12.10323 -11.80647 -11.61908 -11.14368 -11.04805 -10.72786 -10.36754 -10.23352 -10.13282 -9.30807 -9.21357 -8.54201 -8.41080 -7.24236 -6.15978 -4.23716 1.47016 1.51025 3.10001 3.23602 3.30549 3.32225 3.66866 4.00411 4.34108 4.54926 4.69044 4.80462 5.17405 5.19107 5.31576 5.51178 5.63650 5.65348 5.97976 6.10659 6.40022 6.53678 6.65275 6.83515 7.06399 7.24899 7.37417 7.77643 7.94927 8.04329 8.25341 8.62315 8.83168 9.41715 10.91392 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.026325 B = 0.009537 C = 0.007884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.382999 B = 2935.339979 C = 3550.833751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.067 3.933 3 Si 0.900 3.100 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.058 0.942 9 C 0.233 3.767 10 N -0.526 5.526 11 C 0.516 3.484 12 O -0.508 6.508 13 C -0.115 4.115 14 C -0.149 4.149 15 C -0.080 4.080 16 C -0.145 4.145 17 C -0.117 4.117 18 C 0.093 3.907 19 O -0.485 6.485 20 C 0.147 3.853 21 H 0.266 0.734 22 H 0.043 0.957 23 H 0.062 0.938 24 H 0.114 0.886 25 H 0.115 0.885 26 H 0.123 0.877 27 H 0.125 0.875 28 H 0.130 0.870 29 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.929 -9.936 6.754 14.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.137 4.137 3 Si 0.727 3.273 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.575 4.575 8 H 0.076 0.924 9 C 0.116 3.884 10 N -0.245 5.245 11 C 0.304 3.696 12 O -0.383 6.383 13 C -0.154 4.154 14 C -0.153 4.153 15 C -0.099 4.099 16 C -0.164 4.164 17 C -0.136 4.136 18 C 0.045 3.955 19 O -0.296 6.296 20 C 0.048 3.952 21 H 0.076 0.924 22 H 0.061 0.939 23 H 0.080 0.920 24 H 0.132 0.868 25 H 0.133 0.867 26 H 0.141 0.859 27 H 0.143 0.857 28 H 0.148 0.852 29 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 7.062 -9.939 6.002 13.589 hybrid contribution 0.716 1.486 0.019 1.650 sum 7.778 -8.453 6.021 12.969 Atomic orbital electron populations 1.69930 1.05998 1.27320 1.49242 1.24910 0.94867 0.99184 0.94714 0.86473 0.79609 0.82805 0.78407 1.20443 1.20941 1.19850 1.21316 0.93230 0.90306 1.52691 0.92423 1.19715 0.87260 0.81470 1.00000 1.46496 1.41801 1.32692 1.03473 1.20471 0.81272 0.83112 0.84741 1.90724 1.61745 1.66756 1.19102 1.21070 1.01771 1.00303 0.92269 1.19813 1.01511 0.98930 0.95008 1.20136 0.99277 0.98921 0.91517 1.20754 1.00582 0.99476 0.95596 1.21103 0.96582 0.97145 0.98805 1.17848 0.95289 0.94178 0.88205 1.84852 1.34679 1.19474 1.90579 1.18820 0.94404 0.93708 0.88303 0.92441 0.93914 0.92042 0.86773 0.86701 0.85878 0.85669 0.85246 0.74942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.69 13.29 55.43 0.74 -24.95 15 2 C 0.07 1.85 5.46 -17.82 -0.10 1.75 15 3 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 15 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 15 5 H -0.28 -6.54 7.11 56.52 0.40 -6.14 15 6 H -0.27 -6.28 7.11 56.52 0.40 -5.88 15 7 C -0.54 -14.87 9.39 -34.44 -0.32 -15.19 15 8 H 0.06 1.61 7.81 -52.49 -0.41 1.20 15 9 C 0.23 6.17 5.18 -5.19 -0.03 6.14 15 10 N -0.53 -11.96 2.72 -114.39 -0.31 -12.27 15 11 C 0.52 11.19 8.23 -10.83 -0.09 11.10 15 12 O -0.51 -12.76 17.68 5.54 0.10 -12.66 15 13 C -0.11 -1.77 6.87 -28.48 -0.20 -1.97 15 14 C -0.15 -2.36 6.35 -104.38 -0.66 -3.02 15 15 C -0.08 -1.01 10.03 -39.69 -0.40 -1.41 15 16 C -0.14 -1.75 10.06 -39.52 -0.40 -2.14 15 17 C -0.12 -1.64 9.95 -39.52 -0.39 -2.03 15 18 C 0.09 1.65 6.73 -38.95 -0.26 1.39 15 19 O -0.49 -9.20 11.32 -19.66 -0.22 -9.42 15 20 C 0.15 2.85 6.71 -83.49 -0.56 2.29 15 21 H 0.27 7.26 8.31 -40.82 -0.34 6.92 15 22 H 0.04 1.26 7.95 -51.93 -0.41 0.84 15 23 H 0.06 1.67 6.40 -51.93 -0.33 1.33 15 24 H 0.11 1.47 8.14 -51.93 -0.42 1.04 15 25 H 0.12 1.53 8.14 -51.93 -0.42 1.11 15 26 H 0.12 1.16 8.06 -52.49 -0.42 0.74 15 27 H 0.13 1.12 8.06 -52.48 -0.42 0.69 15 28 H 0.13 1.52 8.06 -52.49 -0.42 1.09 15 29 H 0.39 6.63 9.07 45.56 0.41 7.05 15 LS Contribution 260.82 15.07 3.93 3.93 Total: -1.00 -32.35 260.82 -6.19 -38.54 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: -1.99 Total: 3.76 kcal Atomic # 6 Polarization: 0.30 SS G_CDS: -3.41 Total: -3.10 kcal Atomic # 7 Polarization: -37.65 SS G_CDS: 0.43 Total: -37.22 kcal Atomic # 8 Polarization: -21.96 SS G_CDS: -0.12 Total: -22.08 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -32.35 -6.19 -38.54 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260553135.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.554 kcal (2) G-P(sol) polarization free energy of solvation -32.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds