Wall clock time and date at job start Mon Mar 30 2020 02:56:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86805 * 120.00048 * 2 1 4 4 H 1.48500 * 109.46791 * 270.00018 * 3 2 1 5 5 H 1.48503 * 109.46658 * 29.99525 * 3 2 1 6 6 H 1.48498 * 109.47324 * 149.99923 * 3 2 1 7 7 C 1.37882 * 120.00397 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00272 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99602 * 0.02562 * 7 2 1 10 10 N 1.46504 * 109.46889 * 179.97438 * 9 7 2 11 11 C 1.34373 * 123.90694 * 269.96180 * 10 9 7 12 12 O 1.21301 * 126.44928 * 359.97438 * 11 10 9 13 13 C 1.51390 * 107.10169 * 180.02562 * 11 10 9 14 14 C 1.51142 * 104.09645 * 0.02562 * 13 11 10 15 15 C 1.37807 * 132.79990 * 180.02562 * 14 13 11 16 16 C 1.38359 * 120.01488 * 179.77032 * 15 14 13 17 17 C 1.38284 * 119.87650 * 0.49776 * 16 15 14 18 18 C 1.38364 * 120.30225 * 359.48508 * 17 16 15 19 19 O 1.35975 * 119.97688 * 180.27609 * 18 17 16 20 20 C 1.38729 * 106.36620 * 359.97438 * 14 13 11 21 21 H 0.96992 * 120.00185 * 0.02562 * 1 2 3 22 22 H 1.09007 * 109.47243 * 60.00331 * 9 7 2 23 23 H 1.08997 * 109.47287 * 299.99355 * 9 7 2 24 24 H 1.09000 * 110.50251 * 118.65086 * 13 11 10 25 25 H 1.08994 * 110.50654 * 241.34710 * 13 11 10 26 26 H 1.07996 * 119.99257 * 0.02562 * 15 14 13 27 27 H 1.08003 * 120.06740 * 180.28380 * 16 15 14 28 28 H 1.08002 * 119.85221 * 179.76546 * 17 16 15 29 29 H 0.96707 * 114.00294 * 90.00363 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2031 -3.6127 0.0005 11 6 2.6897 -4.1829 -1.1147 12 8 2.4238 -3.8737 -2.2571 13 6 3.6312 -5.2846 -0.6770 14 6 3.5848 -5.2303 0.8327 15 6 4.2126 -5.9642 1.8158 16 6 3.9760 -5.6802 3.1491 17 6 3.1010 -4.6660 3.4926 18 6 2.4688 -3.9263 2.5089 19 8 1.6140 -2.9268 2.8542 20 6 2.7095 -4.2051 1.1603 21 1 -0.4850 0.8400 -0.0004 22 1 0.6248 -2.5571 -0.8898 23 1 0.6242 -2.5568 0.8903 24 1 3.2793 -6.2522 -1.0348 25 1 4.6416 -5.0883 -1.0356 26 1 4.8925 -6.7585 1.5454 27 1 4.4711 -6.2518 3.9202 28 1 2.9138 -4.4471 4.5335 29 1 2.0381 -2.0635 2.9542 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260553135.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:31 Heat of formation + Delta-G solvation = -66.636793 kcal Electronic energy + Delta-G solvation = -16144.042917 eV Core-core repulsion = 13417.459322 eV Total energy + Delta-G solvation = -2726.583594 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.38454 -39.69403 -37.76886 -36.86788 -35.13559 -33.06119 -30.47061 -29.15772 -28.47566 -25.14709 -23.31617 -22.62092 -21.13467 -18.90605 -18.86658 -18.00973 -17.46597 -16.93654 -16.50583 -16.34380 -15.66762 -15.38796 -14.69859 -14.57129 -14.19610 -13.87445 -13.61586 -13.42970 -13.05242 -12.80682 -12.76507 -12.32115 -12.17908 -12.02026 -11.59981 -11.04732 -10.92534 -10.67892 -9.54962 -8.75772 -8.27600 -6.48061 0.24672 0.34698 1.33978 1.36829 1.46923 1.59820 2.08759 2.34616 2.79009 2.99276 3.24188 3.43080 3.54848 4.06586 4.17431 4.37952 4.52815 4.63830 4.78728 4.88203 5.00108 5.08682 5.15831 5.46004 5.52503 5.56519 5.76728 5.89271 5.96161 6.31761 6.57835 6.88198 7.01337 7.24388 8.77343 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.026325 B = 0.009537 C = 0.007884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.382999 B = 2935.339979 C = 3550.833751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.017 3.983 3 Si 0.973 3.027 4 H -0.280 1.280 5 H -0.272 1.272 6 H -0.261 1.261 7 C -0.548 4.548 8 H 0.051 0.949 9 C 0.252 3.748 10 N -0.542 5.542 11 C 0.492 3.508 12 O -0.565 6.565 13 C -0.094 4.094 14 C -0.141 4.141 15 C -0.067 4.067 16 C -0.120 4.120 17 C -0.116 4.116 18 C 0.065 3.935 19 O -0.507 6.507 20 C 0.090 3.910 21 H 0.270 0.730 22 H -0.006 1.006 23 H 0.045 0.955 24 H 0.148 0.852 25 H 0.145 0.855 26 H 0.171 0.829 27 H 0.173 0.827 28 H 0.153 0.847 29 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.947 -11.696 8.713 18.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.184 4.184 3 Si 0.796 3.204 4 H -0.206 1.206 5 H -0.196 1.196 6 H -0.185 1.185 7 C -0.586 4.586 8 H 0.069 0.931 9 C 0.132 3.868 10 N -0.261 5.261 11 C 0.284 3.716 12 O -0.445 6.445 13 C -0.133 4.133 14 C -0.144 4.144 15 C -0.085 4.085 16 C -0.138 4.138 17 C -0.134 4.134 18 C 0.017 3.983 19 O -0.318 6.318 20 C -0.007 4.007 21 H 0.079 0.921 22 H 0.012 0.988 23 H 0.063 0.937 24 H 0.166 0.834 25 H 0.162 0.838 26 H 0.188 0.812 27 H 0.191 0.809 28 H 0.170 0.830 29 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 10.110 -11.747 8.023 17.452 hybrid contribution -0.201 1.906 -0.461 1.972 sum 9.909 -9.840 7.562 15.881 Atomic orbital electron populations 1.70055 1.07693 1.28525 1.49783 1.25838 0.95728 1.02957 0.93833 0.85346 0.78728 0.77986 0.78318 1.20603 1.19641 1.18479 1.21458 0.92867 0.91276 1.53000 0.93095 1.19089 0.87721 0.83261 0.96690 1.46412 1.41707 1.32232 1.05709 1.21661 0.81828 0.84328 0.83815 1.90666 1.63997 1.68862 1.20981 1.21042 1.01220 0.98791 0.92197 1.20084 1.00592 0.98102 0.95599 1.20679 0.98413 0.98668 0.90755 1.21370 0.98208 0.97585 0.96654 1.21431 0.96109 0.96876 0.99013 1.18385 0.96403 0.94721 0.88751 1.84821 1.36121 1.20136 1.90718 1.19268 0.97403 0.96233 0.87787 0.92074 0.98762 0.93721 0.83448 0.83761 0.81166 0.80931 0.82977 0.74859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.71 13.29 21.45 0.28 -55.43 15 2 C 0.02 0.96 5.46 84.66 0.46 1.42 15 3 Si 0.97 44.36 29.54 68.60 2.03 46.39 15 4 H -0.28 -12.81 7.11 99.48 0.71 -12.11 15 5 H -0.27 -11.78 7.11 99.48 0.71 -11.07 15 6 H -0.26 -11.26 7.11 99.48 0.71 -10.55 15 7 C -0.55 -31.95 9.39 25.60 0.24 -31.71 15 8 H 0.05 2.96 7.81 -2.91 -0.02 2.94 15 9 C 0.25 14.43 5.18 85.63 0.44 14.87 15 10 N -0.54 -25.91 2.72 -634.42 -1.73 -27.64 15 11 C 0.49 22.16 8.23 87.94 0.72 22.89 15 12 O -0.56 -30.17 17.68 -3.09 -0.05 -30.22 15 13 C -0.09 -2.70 6.87 29.46 0.20 -2.49 15 14 C -0.14 -4.03 6.35 -19.71 -0.13 -4.16 15 15 C -0.07 -1.30 10.03 22.20 0.22 -1.08 15 16 C -0.12 -2.17 10.06 22.31 0.22 -1.95 15 17 C -0.12 -2.86 9.95 22.31 0.22 -2.64 15 18 C 0.06 2.29 6.73 22.68 0.15 2.44 15 19 O -0.51 -20.17 11.32 -93.27 -1.06 -21.23 15 20 C 0.09 3.48 6.71 38.38 0.26 3.74 15 21 H 0.27 15.22 8.31 -92.71 -0.77 14.45 15 22 H -0.01 -0.37 7.95 -2.38 -0.02 -0.39 15 23 H 0.04 2.64 6.40 -2.39 -0.02 2.63 15 24 H 0.15 3.27 8.14 -2.39 -0.02 3.25 15 25 H 0.14 3.33 8.14 -2.39 -0.02 3.31 15 26 H 0.17 1.82 8.06 -2.91 -0.02 1.79 15 27 H 0.17 1.65 8.06 -2.91 -0.02 1.63 15 28 H 0.15 3.02 8.06 -2.91 -0.02 3.00 15 29 H 0.39 14.28 9.07 -74.05 -0.67 13.61 15 Total: -1.00 -77.31 260.82 3.01 -74.29 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: 0.51 Total: 12.50 kcal Atomic # 6 Polarization: -1.70 SS G_CDS: 3.03 Total: 1.33 kcal Atomic # 7 Polarization: -81.62 SS G_CDS: -1.44 Total: -83.06 kcal Atomic # 8 Polarization: -50.34 SS G_CDS: -1.11 Total: -51.45 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -77.31 3.01 -74.29 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260553135.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.654 kcal (2) G-P(sol) polarization free energy of solvation -77.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds