Wall clock time and date at job start Mon Mar 30 2020 03:11:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30595 * 1 3 3 Si 1.86800 * 120.00165 * 2 1 4 4 H 1.48496 * 109.47377 * 274.98816 * 3 2 1 5 5 H 1.48502 * 109.46827 * 34.98708 * 3 2 1 6 6 H 1.48498 * 109.47319 * 154.98116 * 3 2 1 7 7 C 1.40219 * 119.99826 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99789 * 186.12370 * 7 2 1 9 9 C 1.41248 * 120.00053 * 6.11681 * 7 2 1 10 10 N 1.30636 * 123.22405 * 174.02925 * 9 7 2 11 11 C 1.47586 * 108.33957 * 179.41366 * 10 9 7 12 12 H 1.08996 * 110.93948 * 103.22347 * 11 10 9 13 13 C 1.50704 * 110.90553 * 226.81183 * 11 10 9 14 14 C 1.38285 * 119.96944 * 32.71122 * 13 11 10 15 15 C 1.38251 * 120.10885 * 180.02562 * 14 13 11 16 16 C 1.38160 * 120.05320 * 359.97438 * 15 14 13 17 17 C 1.38708 * 119.94738 * 0.27430 * 16 15 14 18 18 O 1.35899 * 120.05777 * 179.72719 * 17 16 15 19 19 C 1.38121 * 119.97291 * 212.74332 * 13 11 10 20 20 C 1.54785 * 102.10636 * 345.00969 * 11 10 9 21 21 O 1.35194 * 123.22717 * 354.07202 * 9 7 2 22 22 H 0.97006 * 120.00244 * 359.97438 * 1 2 3 23 23 H 1.07999 * 119.95088 * 0.02843 * 14 13 11 24 24 H 1.07995 * 119.96935 * 180.02562 * 15 14 13 25 25 H 1.08009 * 120.02717 * 180.02562 * 16 15 14 26 26 H 0.96700 * 114.00206 * 89.99496 * 18 17 16 27 27 H 1.07997 * 120.02623 * 359.97438 * 19 13 11 28 28 H 1.09000 * 111.01968 * 141.72365 * 20 11 10 29 29 H 1.09006 * 111.02070 * 265.61684 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3059 0.0000 0.0000 3 14 2.2400 1.6177 0.0000 4 1 2.3821 2.1073 -1.3947 5 1 1.4941 2.6199 0.8028 6 1 3.5862 1.4121 0.5921 7 6 2.0070 -1.2144 -0.0005 8 1 3.0824 -1.2171 0.0992 9 6 1.3068 -2.4340 -0.1314 10 7 1.9010 -3.5911 -0.2531 11 6 0.8647 -4.6372 -0.3518 12 1 0.7499 -4.9759 -1.3815 13 6 1.1804 -5.7947 0.5602 14 6 1.8306 -5.5713 1.7601 15 6 2.1221 -6.6310 2.5987 16 6 1.7639 -7.9162 2.2398 17 6 1.1163 -8.1435 1.0345 18 8 0.7678 -9.4074 0.6767 19 6 0.8208 -7.0777 0.1966 20 6 -0.4013 -3.8863 0.1270 21 8 -0.0426 -2.5159 -0.1436 22 1 -0.4851 0.8401 0.0004 23 1 2.1111 -4.5673 2.0426 24 1 2.6296 -6.4539 3.5354 25 1 1.9915 -8.7438 2.8955 26 1 -0.1138 -9.6713 0.9735 27 1 0.3132 -7.2516 -0.7406 28 1 -1.2750 -4.1836 -0.4531 29 1 -0.5695 -4.0432 1.1925 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260560374.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:48 Heat of formation + Delta-G solvation = -38.189769 kcal Electronic energy + Delta-G solvation = -15571.668921 eV Core-core repulsion = 12846.318882 eV Total energy + Delta-G solvation = -2725.350039 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.80940 -38.85756 -36.44660 -33.60623 -32.44312 -30.64346 -29.44096 -28.20398 -25.68849 -23.00899 -22.22090 -20.64020 -19.67380 -17.76036 -17.13210 -16.14263 -15.65820 -15.18118 -14.96223 -14.55744 -14.20206 -13.59043 -13.41087 -12.77960 -12.34466 -12.17950 -11.52679 -11.43559 -11.40194 -11.04638 -10.88024 -10.74251 -10.59284 -10.23877 -10.03956 -9.22734 -8.57364 -8.29618 -8.13315 -7.60578 -6.81090 -4.81566 1.61996 1.67904 2.94622 3.06741 3.12312 3.82692 3.89544 3.98894 4.40590 4.95018 5.11868 5.24197 5.34202 5.58445 5.75591 5.81037 5.90994 5.96765 6.13551 6.16511 6.31353 6.61555 6.66147 6.74314 6.87450 7.09692 7.16848 7.25651 7.71082 7.82588 8.22603 8.56599 8.78652 9.85527 10.19920 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.056724 B = 0.005755 C = 0.005471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.500306 B = 4863.763144 C = 5116.502262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.773 5.773 2 C 0.079 3.921 3 Si 0.923 3.077 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.258 1.258 7 C -0.449 4.449 8 H 0.103 0.897 9 C 0.413 3.587 10 N -0.686 5.686 11 C 0.075 3.925 12 H 0.064 0.936 13 C -0.031 4.031 14 C -0.095 4.095 15 C -0.111 4.111 16 C -0.159 4.159 17 C 0.092 3.908 18 O -0.502 6.502 19 C -0.147 4.147 20 C 0.024 3.976 21 O -0.312 6.312 22 H 0.282 0.718 23 H 0.131 0.869 24 H 0.122 0.878 25 H 0.120 0.880 26 H 0.383 0.617 27 H 0.122 0.878 28 H 0.080 0.920 29 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.878 -7.942 3.788 8.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.400 5.400 2 C -0.144 4.144 3 Si 0.747 3.253 4 H -0.193 1.193 5 H -0.201 1.201 6 H -0.182 1.182 7 C -0.487 4.487 8 H 0.121 0.879 9 C 0.216 3.784 10 N -0.438 5.438 11 C -0.037 4.037 12 H 0.082 0.918 13 C -0.032 4.032 14 C -0.113 4.113 15 C -0.129 4.129 16 C -0.177 4.177 17 C 0.048 3.952 18 O -0.312 6.312 19 C -0.166 4.166 20 C -0.055 4.055 21 O -0.217 6.217 22 H 0.092 0.908 23 H 0.148 0.852 24 H 0.140 0.860 25 H 0.138 0.862 26 H 0.238 0.762 27 H 0.140 0.860 28 H 0.098 0.902 29 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.954 -8.083 3.432 8.833 hybrid contribution -1.037 0.569 0.179 1.197 sum -1.991 -7.513 3.611 8.570 Atomic orbital electron populations 1.69751 1.07532 1.29392 1.33300 1.26088 0.94913 1.01810 0.91625 0.86049 0.80394 0.79663 0.79172 1.19281 1.20128 1.18209 1.18860 0.95138 0.86501 1.48192 0.87876 1.21967 0.78366 0.94102 0.83942 1.75734 1.23862 0.96657 1.47576 1.22021 0.91904 0.94063 0.95712 0.91825 1.19888 0.95178 0.93437 0.94685 1.21177 0.96896 0.99702 0.93542 1.21034 1.00023 0.92162 0.99708 1.21258 1.02794 0.97348 0.96344 1.18365 0.99932 0.83460 0.93463 1.84826 1.38305 1.28133 1.79915 1.21273 1.02978 0.91846 1.00546 1.24245 0.98032 0.83426 0.99782 1.87358 1.23806 1.25080 1.85473 0.90751 0.85156 0.86040 0.86191 0.76231 0.85982 0.90208 0.92414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -20.20 11.84 55.56 0.66 -19.55 15 2 C 0.08 1.98 5.49 -17.33 -0.10 1.89 15 3 Si 0.92 18.50 29.57 -169.99 -5.03 13.47 15 4 H -0.27 -5.29 7.11 56.52 0.40 -4.89 15 5 H -0.28 -5.35 7.11 56.52 0.40 -4.95 15 6 H -0.26 -5.10 7.11 56.52 0.40 -4.69 15 7 C -0.45 -12.19 9.46 -37.70 -0.36 -12.54 15 8 H 0.10 2.72 7.86 -52.48 -0.41 2.31 15 9 C 0.41 11.43 7.37 -16.92 -0.12 11.30 15 10 N -0.69 -18.13 10.56 -54.25 -0.57 -18.70 15 11 C 0.07 1.67 3.97 -67.55 -0.27 1.41 15 12 H 0.06 1.41 8.08 -51.93 -0.42 0.99 15 13 C -0.03 -0.61 4.99 -104.65 -0.52 -1.13 15 14 C -0.09 -1.82 9.35 -39.56 -0.37 -2.19 15 15 C -0.11 -1.76 10.04 -39.61 -0.40 -2.16 15 16 C -0.16 -2.36 9.99 -39.44 -0.39 -2.76 15 17 C 0.09 1.43 6.70 -39.22 -0.26 1.17 15 18 O -0.50 -6.70 13.50 -19.42 -0.26 -6.96 15 19 C -0.15 -2.53 9.64 -39.44 -0.38 -2.91 15 20 C 0.02 0.52 7.69 38.10 0.29 0.81 15 21 O -0.31 -8.43 9.22 -17.28 -0.16 -8.59 15 22 H 0.28 6.61 8.29 -40.82 -0.34 6.27 15 23 H 0.13 2.74 7.55 -52.49 -0.40 2.35 15 24 H 0.12 1.60 8.06 -52.49 -0.42 1.18 15 25 H 0.12 1.48 8.06 -52.48 -0.42 1.06 15 26 H 0.38 3.09 9.06 45.56 0.41 3.50 15 27 H 0.12 1.91 8.06 -52.49 -0.42 1.49 15 28 H 0.08 1.52 8.14 -51.93 -0.42 1.10 15 29 H 0.06 1.22 7.91 -51.93 -0.41 0.81 15 LS Contribution 261.78 15.07 3.94 3.94 Total: -1.00 -30.63 261.78 -6.35 -36.98 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -2.05 Total: 6.51 kcal Atomic # 6 Polarization: -4.24 SS G_CDS: -2.88 Total: -7.11 kcal Atomic # 7 Polarization: -38.33 SS G_CDS: 0.09 Total: -38.25 kcal Atomic # 8 Polarization: -15.13 SS G_CDS: -0.42 Total: -15.55 kcal Atomic # 14 Polarization: 18.50 SS G_CDS: -5.03 Total: 13.47 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -30.63 -6.35 -36.98 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260560374.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.213 kcal (2) G-P(sol) polarization free energy of solvation -30.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds