Wall clock time and date at job start Mon Mar 30 2020 03:11:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30595 * 1 3 3 Si 1.86800 * 120.00165 * 2 1 4 4 H 1.48496 * 109.47377 * 274.98816 * 3 2 1 5 5 H 1.48502 * 109.46827 * 34.98708 * 3 2 1 6 6 H 1.48498 * 109.47319 * 154.98116 * 3 2 1 7 7 C 1.40219 * 119.99826 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99789 * 186.12370 * 7 2 1 9 9 C 1.41248 * 120.00053 * 6.11681 * 7 2 1 10 10 N 1.30636 * 123.22405 * 174.02925 * 9 7 2 11 11 C 1.47586 * 108.33957 * 179.41366 * 10 9 7 12 12 H 1.08996 * 110.93948 * 103.22347 * 11 10 9 13 13 C 1.50704 * 110.90553 * 226.81183 * 11 10 9 14 14 C 1.38285 * 119.96944 * 32.71122 * 13 11 10 15 15 C 1.38251 * 120.10885 * 180.02562 * 14 13 11 16 16 C 1.38160 * 120.05320 * 359.97438 * 15 14 13 17 17 C 1.38708 * 119.94738 * 0.27430 * 16 15 14 18 18 O 1.35899 * 120.05777 * 179.72719 * 17 16 15 19 19 C 1.38121 * 119.97291 * 212.74332 * 13 11 10 20 20 C 1.54785 * 102.10636 * 345.00969 * 11 10 9 21 21 O 1.35194 * 123.22717 * 354.07202 * 9 7 2 22 22 H 0.97006 * 120.00244 * 359.97438 * 1 2 3 23 23 H 1.07999 * 119.95088 * 0.02843 * 14 13 11 24 24 H 1.07995 * 119.96935 * 180.02562 * 15 14 13 25 25 H 1.08009 * 120.02717 * 180.02562 * 16 15 14 26 26 H 0.96700 * 114.00206 * 89.99496 * 18 17 16 27 27 H 1.07997 * 120.02623 * 359.97438 * 19 13 11 28 28 H 1.09000 * 111.01968 * 141.72365 * 20 11 10 29 29 H 1.09006 * 111.02070 * 265.61684 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3059 0.0000 0.0000 3 14 2.2400 1.6177 0.0000 4 1 2.3821 2.1073 -1.3947 5 1 1.4941 2.6199 0.8028 6 1 3.5862 1.4121 0.5921 7 6 2.0070 -1.2144 -0.0005 8 1 3.0824 -1.2171 0.0992 9 6 1.3068 -2.4340 -0.1314 10 7 1.9010 -3.5911 -0.2531 11 6 0.8647 -4.6372 -0.3518 12 1 0.7499 -4.9759 -1.3815 13 6 1.1804 -5.7947 0.5602 14 6 1.8306 -5.5713 1.7601 15 6 2.1221 -6.6310 2.5987 16 6 1.7639 -7.9162 2.2398 17 6 1.1163 -8.1435 1.0345 18 8 0.7678 -9.4074 0.6767 19 6 0.8208 -7.0777 0.1966 20 6 -0.4013 -3.8863 0.1270 21 8 -0.0426 -2.5159 -0.1436 22 1 -0.4851 0.8401 0.0004 23 1 2.1111 -4.5673 2.0426 24 1 2.6296 -6.4539 3.5354 25 1 1.9915 -8.7438 2.8955 26 1 -0.1138 -9.6713 0.9735 27 1 0.3132 -7.2516 -0.7406 28 1 -1.2750 -4.1836 -0.4531 29 1 -0.5695 -4.0432 1.1925 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260560374.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:47 Heat of formation + Delta-G solvation = -62.841593 kcal Electronic energy + Delta-G solvation = -15572.737904 eV Core-core repulsion = 12846.318882 eV Total energy + Delta-G solvation = -2726.419022 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.49965 -40.32526 -37.67522 -35.51679 -34.15265 -32.39861 -30.85658 -29.79873 -27.60169 -24.58198 -23.50899 -22.30940 -21.43009 -19.41231 -18.71144 -17.56370 -17.14576 -17.04826 -16.27704 -16.05610 -15.88407 -15.38518 -14.70771 -14.39069 -13.98413 -13.58004 -13.16365 -13.03152 -12.94073 -12.74932 -12.55115 -12.46978 -12.19121 -11.86984 -11.36457 -11.08575 -10.31650 -9.83767 -9.64155 -9.42341 -8.70611 -6.85800 0.32400 0.36885 1.30951 1.42301 1.58961 1.96477 2.22074 2.67960 3.06286 3.20547 3.38258 3.87645 3.94899 4.07941 4.21671 4.24686 4.36524 4.45635 4.56420 4.81553 4.89907 4.99080 5.10756 5.16553 5.41895 5.48264 5.73123 5.81240 5.92371 6.19910 6.59624 6.76298 6.88137 7.86551 8.32137 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.056724 B = 0.005755 C = 0.005471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.500306 B = 4863.763144 C = 5116.502262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.806 5.806 2 C 0.038 3.962 3 Si 1.004 2.996 4 H -0.260 1.260 5 H -0.261 1.261 6 H -0.255 1.255 7 C -0.484 4.484 8 H 0.098 0.902 9 C 0.390 3.610 10 N -0.709 5.709 11 C 0.074 3.926 12 H 0.061 0.939 13 C -0.052 4.052 14 C -0.121 4.121 15 C -0.103 4.103 16 C -0.149 4.149 17 C 0.104 3.896 18 O -0.504 6.504 19 C -0.154 4.154 20 C 0.022 3.978 21 O -0.339 6.339 22 H 0.293 0.707 23 H 0.098 0.902 24 H 0.149 0.851 25 H 0.155 0.845 26 H 0.410 0.590 27 H 0.133 0.867 28 H 0.108 0.892 29 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.806 -8.986 4.524 10.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C -0.183 4.183 3 Si 0.823 3.177 4 H -0.184 1.184 5 H -0.185 1.185 6 H -0.179 1.179 7 C -0.522 4.522 8 H 0.116 0.884 9 C 0.193 3.807 10 N -0.462 5.462 11 C -0.037 4.037 12 H 0.079 0.921 13 C -0.053 4.053 14 C -0.140 4.140 15 C -0.121 4.121 16 C -0.168 4.168 17 C 0.060 3.940 18 O -0.317 6.317 19 C -0.173 4.173 20 C -0.055 4.055 21 O -0.244 6.244 22 H 0.103 0.897 23 H 0.116 0.884 24 H 0.166 0.834 25 H 0.173 0.827 26 H 0.269 0.731 27 H 0.150 0.850 28 H 0.126 0.874 29 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.917 -9.173 4.174 10.120 hybrid contribution -1.118 0.690 -0.039 1.314 sum -2.035 -8.483 4.135 9.654 Atomic orbital electron populations 1.69802 1.09153 1.31153 1.33099 1.27070 0.95771 1.05135 0.90276 0.84872 0.78863 0.74377 0.79616 1.18449 1.18507 1.17851 1.19186 0.95292 0.87793 1.49910 0.88353 1.22290 0.78889 0.94781 0.84784 1.75627 1.25857 0.97495 1.47178 1.22018 0.91054 0.94215 0.96430 0.92090 1.19676 0.97366 0.93489 0.94790 1.21043 0.98880 0.99398 0.94673 1.21269 0.99171 0.91702 0.99968 1.21609 1.01146 0.97685 0.96335 1.18388 0.98851 0.83788 0.93005 1.84764 1.40410 1.26459 1.80116 1.21353 1.03212 0.91265 1.01447 1.24440 0.98988 0.81533 1.00547 1.87286 1.23672 1.27725 1.85706 0.89655 0.88354 0.83360 0.82718 0.73118 0.84955 0.87372 0.92078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -42.76 11.84 21.87 0.26 -42.51 15 2 C 0.04 1.91 5.49 85.36 0.47 2.38 15 3 Si 1.00 37.87 29.57 68.60 2.03 39.90 15 4 H -0.26 -9.44 7.11 99.48 0.71 -8.73 15 5 H -0.26 -9.13 7.11 99.48 0.71 -8.43 15 6 H -0.26 -9.38 7.11 99.48 0.71 -8.67 15 7 C -0.48 -27.30 9.46 23.49 0.22 -27.08 15 8 H 0.10 5.42 7.86 -2.91 -0.02 5.40 15 9 C 0.39 22.55 7.37 85.61 0.63 23.18 15 10 N -0.71 -39.20 10.56 -439.48 -4.64 -43.84 15 11 C 0.07 3.43 3.97 44.65 0.18 3.61 15 12 H 0.06 2.78 8.08 -2.39 -0.02 2.76 15 13 C -0.05 -2.08 4.99 -19.88 -0.10 -2.18 15 14 C -0.12 -4.72 9.35 22.28 0.21 -4.51 15 15 C -0.10 -3.08 10.04 22.25 0.22 -2.86 15 16 C -0.15 -3.92 9.99 22.36 0.22 -3.69 15 17 C 0.10 2.93 6.70 22.50 0.15 3.08 15 18 O -0.50 -11.45 13.50 -92.41 -1.25 -12.70 15 19 C -0.15 -5.07 9.64 22.36 0.22 -4.86 15 20 C 0.02 1.02 7.69 72.59 0.56 1.57 15 21 O -0.34 -18.97 9.22 -84.74 -0.78 -19.75 15 22 H 0.29 13.77 8.29 -92.70 -0.77 13.00 15 23 H 0.10 4.39 7.55 -2.91 -0.02 4.37 15 24 H 0.15 3.54 8.06 -2.91 -0.02 3.52 15 25 H 0.16 3.02 8.06 -2.91 -0.02 2.99 15 26 H 0.41 4.83 9.06 -74.06 -0.67 4.16 15 27 H 0.13 3.97 8.06 -2.91 -0.02 3.95 15 28 H 0.11 4.14 8.14 -2.39 -0.02 4.12 15 29 H 0.06 2.67 7.91 -2.38 -0.02 2.65 15 Total: -1.00 -68.26 261.78 -0.89 -69.15 By element: Atomic # 1 Polarization: 20.58 SS G_CDS: 0.51 Total: 21.09 kcal Atomic # 6 Polarization: -14.33 SS G_CDS: 2.98 Total: -11.35 kcal Atomic # 7 Polarization: -81.97 SS G_CDS: -4.38 Total: -86.35 kcal Atomic # 8 Polarization: -30.42 SS G_CDS: -2.03 Total: -32.45 kcal Atomic # 14 Polarization: 37.87 SS G_CDS: 2.03 Total: 39.90 kcal Total: -68.26 -0.89 -69.15 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260560374.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.311 kcal (2) G-P(sol) polarization free energy of solvation -68.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds