Wall clock time and date at job start Mon Mar 30 2020 03:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99979 * 2 1 4 4 H 1.48504 * 109.46950 * 269.99554 * 3 2 1 5 5 H 1.48489 * 109.47440 * 29.99694 * 3 2 1 6 6 H 1.48505 * 109.47106 * 150.00212 * 3 2 1 7 7 C 1.37878 * 119.99881 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99687 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99840 * 180.02562 * 7 2 1 10 10 H 1.08997 * 110.95189 * 304.00391 * 9 7 2 11 11 C 1.54818 * 111.04177 * 179.97438 * 9 7 2 12 12 N 1.47591 * 102.04130 * 218.48992 * 11 9 7 13 13 C 1.29740 * 108.43419 * 15.05177 * 12 11 9 14 14 C 1.47776 * 123.09722 * 180.41852 * 13 12 11 15 15 C 1.39574 * 120.17605 * 180.02562 * 14 13 12 16 16 C 1.37858 * 119.91399 * 179.97438 * 15 14 13 17 17 C 1.38487 * 120.28335 * 359.97438 * 16 15 14 18 18 C 1.38099 * 120.35663 * 0.03499 * 17 16 15 19 19 C 1.38671 * 120.07959 * 359.70820 * 18 17 16 20 20 O 1.35718 * 120.13838 * 180.27076 * 19 18 17 21 21 O 1.34951 * 113.80550 * 0.39490 * 13 12 11 22 22 H 0.97002 * 119.99822 * 0.02562 * 1 2 3 23 23 H 1.09002 * 110.92222 * 100.29309 * 11 9 7 24 24 H 1.08995 * 110.92241 * 336.68620 * 11 9 7 25 25 H 1.07999 * 120.03794 * 359.97438 * 15 14 13 26 26 H 1.08000 * 119.85950 * 179.97438 * 16 15 14 27 27 H 1.08000 * 119.82406 * 180.02562 * 17 16 15 28 28 H 1.08003 * 119.96086 * 179.97438 * 18 17 16 29 29 H 0.96701 * 114.00269 * 270.25170 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5468 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1293 0.0014 9 6 3.5115 -1.1941 0.0011 10 1 3.9016 -0.6250 -0.8427 11 6 4.0674 -2.6390 0.0023 12 7 5.2321 -2.5201 0.9010 13 6 5.1337 -1.4036 1.5545 14 6 6.1382 -0.9549 2.5411 15 6 5.9711 0.2585 3.2103 16 6 6.9112 0.6716 4.1300 17 6 8.0216 -0.1127 4.3940 18 6 8.1985 -1.3152 3.7385 19 6 7.2594 -1.7477 2.8143 20 8 7.4293 -2.9319 2.1734 21 8 4.0299 -0.6895 1.2497 22 1 -0.4850 0.8401 -0.0004 23 1 4.3773 -2.9376 -0.9991 24 1 3.3344 -3.3377 0.4054 25 1 5.1063 0.8730 3.0076 26 1 6.7812 1.6109 4.6470 27 1 8.7533 0.2179 5.1163 28 1 9.0671 -1.9216 3.9490 29 1 7.9254 -2.8639 1.3461 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260598351.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:51 Heat of formation + Delta-G solvation = -20.603787 kcal Electronic energy + Delta-G solvation = -15877.317255 eV Core-core repulsion = 13152.729801 eV Total energy + Delta-G solvation = -2724.587453 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.24017 -39.11041 -36.42285 -33.09152 -32.47017 -31.63030 -29.89648 -28.85870 -25.14311 -22.87343 -22.45517 -20.94439 -19.81325 -18.02245 -17.21156 -16.67668 -15.58747 -15.35259 -15.09051 -14.69375 -14.29658 -13.79436 -13.23522 -12.96003 -12.67084 -12.27307 -12.11520 -11.86244 -11.46319 -11.32777 -10.96197 -10.68583 -10.31838 -10.03049 -9.69106 -9.13389 -8.94935 -8.80637 -8.62754 -7.86587 -6.33172 -4.45305 0.97829 1.34196 3.00521 3.21233 3.27625 3.44612 3.87875 4.00956 4.30134 4.38493 4.75458 4.96951 4.99765 5.23241 5.37824 5.57663 5.71848 5.85482 6.01054 6.08259 6.22097 6.31539 6.42203 6.49545 6.63729 6.82831 6.98448 7.18603 7.47382 7.89459 8.19225 8.58088 8.70239 9.27228 10.76375 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.033144 B = 0.008382 C = 0.006976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.590875 B = 3339.716160 C = 4012.753144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.087 3.913 3 Si 0.874 3.126 4 H -0.278 1.278 5 H -0.283 1.283 6 H -0.238 1.238 7 C -0.523 4.523 8 H 0.085 0.915 9 C 0.145 3.855 10 H 0.050 0.950 11 C 0.006 3.994 12 N -0.535 5.535 13 C 0.319 3.681 14 C -0.061 4.061 15 C -0.066 4.066 16 C -0.139 4.139 17 C -0.093 4.093 18 C -0.159 4.159 19 C 0.153 3.847 20 O -0.472 6.472 21 O -0.346 6.346 22 H 0.270 0.730 23 H 0.082 0.918 24 H 0.085 0.915 25 H 0.137 0.863 26 H 0.128 0.872 27 H 0.126 0.874 28 H 0.131 0.869 29 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.892 1.745 5.703 16.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.119 4.119 3 Si 0.700 3.300 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.162 1.162 7 C -0.559 4.559 8 H 0.103 0.897 9 C 0.091 3.909 10 H 0.067 0.933 11 C -0.124 4.124 12 N -0.273 5.273 13 C 0.097 3.903 14 C -0.063 4.063 15 C -0.086 4.086 16 C -0.157 4.157 17 C -0.112 4.112 18 C -0.177 4.177 19 C 0.106 3.894 20 O -0.282 6.282 21 O -0.249 6.249 22 H 0.080 0.920 23 H 0.100 0.900 24 H 0.103 0.897 25 H 0.155 0.845 26 H 0.146 0.854 27 H 0.144 0.856 28 H 0.149 0.851 29 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 15.727 1.013 6.079 16.892 hybrid contribution -0.253 1.443 -0.611 1.587 sum 15.474 2.456 5.468 16.595 Atomic orbital electron populations 1.69900 1.06611 1.27932 1.46839 1.25118 0.94813 0.99875 0.92127 0.86867 0.82056 0.82390 0.78720 1.20358 1.20919 1.16174 1.20897 0.86534 0.95399 1.53099 0.89658 1.22168 0.96457 0.90791 0.81503 0.93255 1.23900 0.92089 0.98762 0.97614 1.75050 1.23108 1.16200 1.12933 1.23197 0.86380 0.88378 0.92367 1.18482 0.94381 0.95432 0.97960 1.21356 0.98946 0.94458 0.93831 1.21073 0.94791 1.00669 0.99204 1.21118 0.97496 0.93931 0.98613 1.21345 0.99662 0.97297 0.99436 1.18458 0.92086 0.84981 0.93910 1.84787 1.78329 1.25417 1.39689 1.87476 1.36475 1.58475 1.42520 0.92000 0.89964 0.89660 0.84477 0.85411 0.85580 0.85103 0.75285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.19 13.96 55.43 0.77 -25.42 15 2 C 0.09 2.50 5.47 -17.82 -0.10 2.40 15 3 Si 0.87 21.20 27.08 -169.99 -4.60 16.59 15 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 15 5 H -0.28 -6.78 7.11 56.52 0.40 -6.38 15 6 H -0.24 -5.64 5.75 56.52 0.32 -5.31 15 7 C -0.52 -14.81 9.40 -34.44 -0.32 -15.13 15 8 H 0.09 2.57 7.86 -52.49 -0.41 2.16 15 9 C 0.15 3.59 2.88 -26.93 -0.08 3.51 15 10 H 0.05 1.19 7.41 -51.93 -0.39 0.81 15 11 C 0.01 0.13 7.67 -2.49 -0.02 0.11 15 12 N -0.54 -11.53 9.94 -57.71 -0.57 -12.11 15 13 C 0.32 6.93 7.58 -14.54 -0.11 6.82 15 14 C -0.06 -1.08 5.89 -104.83 -0.62 -1.70 15 15 C -0.07 -1.04 9.67 -39.22 -0.38 -1.42 15 16 C -0.14 -1.69 10.02 -39.63 -0.40 -2.09 15 17 C -0.09 -1.00 10.03 -39.54 -0.40 -1.40 15 18 C -0.16 -1.91 9.98 -39.47 -0.39 -2.31 15 19 C 0.15 2.34 6.71 -38.76 -0.26 2.08 15 20 O -0.47 -7.18 11.61 -18.86 -0.22 -7.40 15 21 O -0.35 -8.48 8.17 -16.57 -0.14 -8.62 15 22 H 0.27 7.49 8.31 -40.82 -0.34 7.15 15 23 H 0.08 1.63 8.14 -51.93 -0.42 1.20 15 24 H 0.09 1.96 7.77 -51.93 -0.40 1.55 15 25 H 0.14 2.26 7.77 -52.49 -0.41 1.85 15 26 H 0.13 1.21 8.06 -52.49 -0.42 0.78 15 27 H 0.13 0.96 8.06 -52.49 -0.42 0.54 15 28 H 0.13 1.26 8.06 -52.48 -0.42 0.83 15 29 H 0.39 4.44 9.06 45.56 0.41 4.85 15 LS Contribution 256.52 15.07 3.87 3.87 Total: -1.00 -32.28 256.52 -6.06 -38.34 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -2.10 Total: 3.88 kcal Atomic # 6 Polarization: -6.06 SS G_CDS: -3.07 Total: -9.13 kcal Atomic # 7 Polarization: -37.73 SS G_CDS: 0.20 Total: -37.53 kcal Atomic # 8 Polarization: -15.67 SS G_CDS: -0.35 Total: -16.02 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.60 Total: 16.59 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -32.28 -6.06 -38.34 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260598351.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.736 kcal (2) G-P(sol) polarization free energy of solvation -32.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds