Wall clock time and date at job start Mon Mar 30 2020 03:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99979 * 2 1 4 4 H 1.48504 * 109.46950 * 269.99554 * 3 2 1 5 5 H 1.48489 * 109.47440 * 29.99694 * 3 2 1 6 6 H 1.48505 * 109.47106 * 150.00212 * 3 2 1 7 7 C 1.37878 * 119.99881 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99687 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99840 * 180.02562 * 7 2 1 10 10 H 1.08997 * 110.95189 * 304.00391 * 9 7 2 11 11 C 1.54818 * 111.04177 * 179.97438 * 9 7 2 12 12 N 1.47591 * 102.04130 * 218.48992 * 11 9 7 13 13 C 1.29740 * 108.43419 * 15.05177 * 12 11 9 14 14 C 1.47776 * 123.09722 * 180.41852 * 13 12 11 15 15 C 1.39574 * 120.17605 * 180.02562 * 14 13 12 16 16 C 1.37858 * 119.91399 * 179.97438 * 15 14 13 17 17 C 1.38487 * 120.28335 * 359.97438 * 16 15 14 18 18 C 1.38099 * 120.35663 * 0.03499 * 17 16 15 19 19 C 1.38671 * 120.07959 * 359.70820 * 18 17 16 20 20 O 1.35718 * 120.13838 * 180.27076 * 19 18 17 21 21 O 1.34951 * 113.80550 * 0.39490 * 13 12 11 22 22 H 0.97002 * 119.99822 * 0.02562 * 1 2 3 23 23 H 1.09002 * 110.92222 * 100.29309 * 11 9 7 24 24 H 1.08995 * 110.92241 * 336.68620 * 11 9 7 25 25 H 1.07999 * 120.03794 * 359.97438 * 15 14 13 26 26 H 1.08000 * 119.85950 * 179.97438 * 16 15 14 27 27 H 1.08000 * 119.82406 * 180.02562 * 17 16 15 28 28 H 1.08003 * 119.96086 * 179.97438 * 18 17 16 29 29 H 0.96701 * 114.00269 * 270.25170 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5468 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1293 0.0014 9 6 3.5115 -1.1941 0.0011 10 1 3.9016 -0.6250 -0.8427 11 6 4.0674 -2.6390 0.0023 12 7 5.2321 -2.5201 0.9010 13 6 5.1337 -1.4036 1.5545 14 6 6.1382 -0.9549 2.5411 15 6 5.9711 0.2585 3.2103 16 6 6.9112 0.6716 4.1300 17 6 8.0216 -0.1127 4.3940 18 6 8.1985 -1.3152 3.7385 19 6 7.2594 -1.7477 2.8143 20 8 7.4293 -2.9319 2.1734 21 8 4.0299 -0.6895 1.2497 22 1 -0.4850 0.8401 -0.0004 23 1 4.3773 -2.9376 -0.9991 24 1 3.3344 -3.3377 0.4054 25 1 5.1063 0.8730 3.0076 26 1 6.7812 1.6109 4.6470 27 1 8.7533 0.2179 5.1163 28 1 9.0671 -1.9216 3.9490 29 1 7.9254 -2.8639 1.3461 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260598351.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:51 Heat of formation + Delta-G solvation = -47.044495 kcal Electronic energy + Delta-G solvation = -15878.463810 eV Core-core repulsion = 13152.729801 eV Total energy + Delta-G solvation = -2725.734009 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.88221 -40.35150 -37.49812 -35.15793 -34.27032 -33.05235 -31.14295 -30.38509 -26.98213 -24.18802 -23.68568 -22.73400 -21.30869 -19.35016 -19.13551 -18.05979 -17.23454 -16.80624 -16.41867 -16.27671 -15.56563 -15.18380 -14.92270 -14.68079 -14.25023 -13.88586 -13.57298 -13.10829 -12.96568 -12.88758 -12.50624 -12.43540 -12.04820 -11.70439 -11.41874 -10.99426 -10.86563 -10.36619 -9.73097 -9.37269 -8.52365 -6.71576 -0.18831 0.33343 1.28392 1.29420 1.52788 1.56935 2.26535 2.36356 2.75716 2.98602 3.29308 3.34577 3.96696 3.99788 4.14023 4.21485 4.43204 4.48033 4.53684 4.62442 4.86659 4.99885 5.05140 5.22231 5.39927 5.41262 5.49586 5.65941 5.88425 5.98315 6.41129 6.85732 6.90929 7.06075 8.61076 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.033144 B = 0.008382 C = 0.006976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.590875 B = 3339.716160 C = 4012.753144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.035 3.965 3 Si 0.941 3.059 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.232 1.232 7 C -0.540 4.540 8 H 0.047 0.953 9 C 0.146 3.854 10 H 0.060 0.940 11 C 0.009 3.991 12 N -0.540 5.540 13 C 0.315 3.685 14 C -0.104 4.104 15 C -0.082 4.082 16 C -0.132 4.132 17 C -0.070 4.070 18 C -0.151 4.151 19 C 0.145 3.855 20 O -0.488 6.488 21 O -0.363 6.363 22 H 0.276 0.724 23 H 0.106 0.894 24 H 0.067 0.933 25 H 0.119 0.881 26 H 0.160 0.840 27 H 0.173 0.827 28 H 0.162 0.838 29 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.293 3.269 7.265 20.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.167 4.167 3 Si 0.762 3.238 4 H -0.188 1.188 5 H -0.201 1.201 6 H -0.155 1.155 7 C -0.577 4.577 8 H 0.065 0.935 9 C 0.091 3.909 10 H 0.077 0.923 11 C -0.121 4.121 12 N -0.277 5.277 13 C 0.093 3.907 14 C -0.106 4.106 15 C -0.103 4.103 16 C -0.150 4.150 17 C -0.089 4.089 18 C -0.169 4.169 19 C 0.098 3.902 20 O -0.301 6.301 21 O -0.267 6.267 22 H 0.085 0.915 23 H 0.124 0.876 24 H 0.085 0.915 25 H 0.137 0.863 26 H 0.177 0.823 27 H 0.190 0.810 28 H 0.179 0.821 29 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges 19.142 2.516 7.630 20.760 hybrid contribution -1.229 0.909 -0.987 1.819 sum 17.914 3.425 6.643 19.410 Atomic orbital electron populations 1.70011 1.08301 1.29238 1.48333 1.26014 0.95599 1.03667 0.91437 0.85836 0.80776 0.77607 0.79550 1.18760 1.20144 1.15509 1.21032 0.88720 0.94262 1.53675 0.93455 1.21997 0.94347 0.92618 0.81921 0.92259 1.23856 0.92164 0.96943 0.99118 1.75063 1.22575 1.16555 1.13502 1.23954 0.86060 0.87856 0.92804 1.18654 0.95085 0.97590 0.99279 1.21378 0.99754 0.93824 0.95295 1.21438 0.93952 1.01876 0.97697 1.21668 0.97136 0.92472 0.97591 1.21693 0.99489 0.97959 0.97802 1.18704 0.92087 0.84672 0.94711 1.84737 1.78842 1.25824 1.40658 1.87360 1.38119 1.58957 1.42297 0.91494 0.87618 0.91454 0.86258 0.82271 0.80993 0.82056 0.73737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.79 13.96 21.45 0.30 -56.49 15 2 C 0.04 2.07 5.47 84.66 0.46 2.53 15 3 Si 0.94 44.19 27.08 68.60 1.86 46.05 15 4 H -0.26 -11.64 7.11 99.48 0.71 -10.93 15 5 H -0.28 -12.54 7.11 99.48 0.71 -11.84 15 6 H -0.23 -10.59 5.75 99.48 0.57 -10.02 15 7 C -0.54 -31.89 9.40 25.60 0.24 -31.65 15 8 H 0.05 3.05 7.86 -2.91 -0.02 3.03 15 9 C 0.15 7.36 2.88 30.47 0.09 7.45 15 10 H 0.06 2.86 7.41 -2.39 -0.02 2.85 15 11 C 0.01 0.40 7.67 86.79 0.67 1.06 15 12 N -0.54 -23.43 9.94 -450.99 -4.48 -27.91 15 13 C 0.32 13.76 7.58 87.53 0.66 14.42 15 14 C -0.10 -3.63 5.89 -20.00 -0.12 -3.75 15 15 C -0.08 -2.47 9.67 22.50 0.22 -2.25 15 16 C -0.13 -2.66 10.02 22.24 0.22 -2.44 15 17 C -0.07 -1.13 10.03 22.30 0.22 -0.91 15 18 C -0.15 -2.98 9.98 22.34 0.22 -2.75 15 19 C 0.15 4.15 6.71 22.80 0.15 4.31 15 20 O -0.49 -14.18 11.61 -90.40 -1.05 -15.23 15 21 O -0.36 -18.06 8.17 -82.20 -0.67 -18.73 15 22 H 0.28 15.66 8.31 -92.71 -0.77 14.89 15 23 H 0.11 4.20 8.14 -2.39 -0.02 4.18 15 24 H 0.07 3.25 7.77 -2.39 -0.02 3.23 15 25 H 0.12 3.90 7.77 -2.91 -0.02 3.88 15 26 H 0.16 2.20 8.06 -2.91 -0.02 2.17 15 27 H 0.17 1.30 8.06 -2.91 -0.02 1.28 15 28 H 0.16 2.21 8.06 -2.91 -0.02 2.19 15 29 H 0.40 8.67 9.06 -74.06 -0.67 8.00 15 Total: -1.00 -72.77 256.52 -0.63 -73.39 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: 0.37 Total: 12.90 kcal Atomic # 6 Polarization: -17.03 SS G_CDS: 3.04 Total: -13.98 kcal Atomic # 7 Polarization: -80.23 SS G_CDS: -4.18 Total: -84.41 kcal Atomic # 8 Polarization: -32.23 SS G_CDS: -1.72 Total: -33.95 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 1.86 Total: 46.05 kcal Total: -72.77 -0.63 -73.39 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260598351.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.350 kcal (2) G-P(sol) polarization free energy of solvation -72.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds