Wall clock time and date at job start Mon Mar 30 2020 03:00:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99805 * 2 1 4 4 H 1.48504 * 109.47012 * 179.97438 * 3 2 1 5 5 H 1.48491 * 109.47354 * 299.99488 * 3 2 1 6 6 H 1.48498 * 109.47390 * 59.99933 * 3 2 1 7 7 C 1.37879 * 119.99852 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99612 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99995 * 0.02562 * 7 2 1 10 10 H 1.08999 * 110.92108 * 56.01330 * 9 7 2 11 11 C 1.54813 * 111.04143 * 180.02562 * 9 7 2 12 12 N 1.47594 * 102.01059 * 141.56914 * 11 9 7 13 13 C 1.29744 * 108.42882 * 344.92871 * 12 11 9 14 14 C 1.47776 * 123.09876 * 179.58463 * 13 12 11 15 15 C 1.39566 * 120.17968 * 179.75104 * 14 13 12 16 16 C 1.37862 * 119.91656 * 179.71838 * 15 14 13 17 17 C 1.38493 * 120.27750 * 0.55496 * 16 15 14 18 18 C 1.38096 * 120.36239 * 359.72308 * 17 16 15 19 19 C 1.38664 * 120.07775 * 359.97438 * 18 17 16 20 20 O 1.35716 * 120.14411 * 180.02562 * 19 18 17 21 21 O 1.34945 * 113.80689 * 359.85512 * 13 12 11 22 22 H 0.97004 * 119.99687 * 0.02562 * 1 2 3 23 23 H 1.08995 * 110.92658 * 23.38605 * 11 9 7 24 24 H 1.09003 * 110.95143 * 259.75667 * 11 9 7 25 25 H 1.08001 * 120.04163 * 359.97223 * 15 14 13 26 26 H 1.08006 * 119.86567 * 180.27867 * 16 15 14 27 27 H 1.08007 * 119.81951 * 179.69420 * 17 16 15 28 28 H 1.07999 * 119.96435 * 179.97438 * 18 17 16 29 29 H 0.96705 * 113.99459 * 269.97666 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.5638 -2.5518 -0.8439 11 6 2.2244 -3.7030 0.0018 12 7 1.5374 -4.6525 0.8990 13 6 0.6193 -4.0089 1.5519 14 6 -0.2732 -4.6544 2.5371 15 6 -1.2376 -3.9019 3.2089 16 6 -2.0712 -4.5108 4.1227 17 6 -1.9483 -5.8650 4.3858 18 6 -0.9943 -6.6194 3.7319 19 6 -0.1522 -6.0234 2.8053 20 8 0.7856 -6.7637 2.1615 21 8 0.5505 -2.6968 1.2441 22 1 -0.4850 0.8401 -0.0004 23 1 3.1954 -3.4181 0.4065 24 1 2.3294 -4.1204 -0.9996 25 1 -1.3335 -2.8447 3.0103 26 1 -2.8202 -3.9286 4.6389 27 1 -2.6020 -6.3335 5.1067 28 1 -0.9038 -7.6748 3.9423 29 1 1.6381 -6.8005 2.6166 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260598353.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:54 Heat of formation + Delta-G solvation = -26.126413 kcal Electronic energy + Delta-G solvation = -15771.671620 eV Core-core repulsion = 13046.844688 eV Total energy + Delta-G solvation = -2724.826932 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.01419 -38.91821 -36.29956 -33.10343 -32.19106 -31.43916 -29.72240 -28.43914 -25.01992 -22.74744 -22.38353 -21.03800 -19.58620 -17.86340 -16.88804 -16.39880 -15.43025 -15.25156 -14.79283 -14.67416 -14.25298 -13.64724 -13.36548 -12.77704 -12.35945 -11.96187 -11.79325 -11.69583 -11.36643 -11.27830 -11.03335 -10.64835 -10.26858 -10.00002 -9.69680 -8.91775 -8.85811 -8.71116 -8.47001 -7.65257 -6.26219 -4.42379 1.11952 1.47239 3.16468 3.19902 3.26695 3.31042 3.99562 4.21794 4.27473 4.53388 4.92100 5.08010 5.10406 5.34640 5.51905 5.73532 5.85893 6.10854 6.17826 6.31771 6.36097 6.49080 6.55908 6.64884 6.85805 7.01223 7.33318 7.48421 7.65460 8.00559 8.01246 8.63855 8.91310 9.31336 10.81338 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.037962 B = 0.007042 C = 0.006136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.410585 B = 3975.360068 C = 4562.508022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.078 3.922 3 Si 0.902 3.098 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.532 4.532 8 H 0.071 0.929 9 C 0.183 3.817 10 H 0.052 0.948 11 C -0.005 4.005 12 N -0.545 5.545 13 C 0.319 3.681 14 C -0.058 4.058 15 C -0.062 4.062 16 C -0.140 4.140 17 C -0.095 4.095 18 C -0.161 4.161 19 C 0.151 3.849 20 O -0.473 6.473 21 O -0.327 6.327 22 H 0.266 0.734 23 H 0.077 0.923 24 H 0.077 0.923 25 H 0.141 0.859 26 H 0.127 0.873 27 H 0.125 0.875 28 H 0.129 0.871 29 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.544 -8.853 7.995 12.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.130 4.130 3 Si 0.729 3.271 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.206 1.206 7 C -0.569 4.569 8 H 0.089 0.911 9 C 0.128 3.872 10 H 0.069 0.931 11 C -0.134 4.134 12 N -0.284 5.284 13 C 0.097 3.903 14 C -0.060 4.060 15 C -0.082 4.082 16 C -0.158 4.158 17 C -0.114 4.114 18 C -0.179 4.179 19 C 0.103 3.897 20 O -0.283 6.283 21 O -0.229 6.229 22 H 0.076 0.924 23 H 0.095 0.905 24 H 0.096 0.904 25 H 0.159 0.841 26 H 0.145 0.855 27 H 0.143 0.857 28 H 0.147 0.853 29 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -2.797 -9.401 7.485 12.338 hybrid contribution 0.686 1.768 0.069 1.897 sum -2.111 -7.633 7.554 10.945 Atomic orbital electron populations 1.70028 1.06268 1.27320 1.46019 1.25176 0.94926 0.99921 0.92938 0.86377 0.80210 0.82631 0.77895 1.19342 1.20542 1.20553 1.21043 0.92970 0.89072 1.53779 0.91078 1.21708 0.89254 0.94393 0.81801 0.93053 1.24044 0.99700 0.92207 0.97484 1.75032 1.09800 1.30238 1.13352 1.23263 0.91308 0.83713 0.92049 1.18489 0.97422 0.92318 0.97763 1.21401 0.92476 1.00915 0.93410 1.21078 1.00308 0.94966 0.99493 1.21099 0.97394 0.94026 0.98839 1.21307 0.98433 1.00574 0.97608 1.18463 0.92014 0.87869 0.91314 1.84770 1.23694 1.69953 1.49908 1.87380 1.73176 1.20093 1.42284 0.92406 0.90522 0.90446 0.84123 0.85481 0.85720 0.85260 0.75322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.89 13.22 55.43 0.73 -24.16 15 2 C 0.08 2.15 5.46 -17.82 -0.10 2.06 15 3 Si 0.90 20.83 29.54 -169.99 -5.02 15.81 15 4 H -0.27 -6.09 7.11 56.52 0.40 -5.68 15 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 15 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 15 7 C -0.53 -14.84 8.84 -34.44 -0.30 -15.14 15 8 H 0.07 1.92 7.61 -52.49 -0.40 1.52 15 9 C 0.18 4.90 3.46 -26.93 -0.09 4.81 15 10 H 0.05 1.47 8.14 -51.93 -0.42 1.05 15 11 C 0.00 -0.11 7.67 -2.49 -0.02 -0.13 15 12 N -0.55 -12.45 9.94 -57.71 -0.57 -13.03 15 13 C 0.32 7.40 7.59 -14.54 -0.11 7.29 15 14 C -0.06 -1.11 5.89 -104.83 -0.62 -1.73 15 15 C -0.06 -1.06 9.67 -39.22 -0.38 -1.44 15 16 C -0.14 -1.85 10.03 -39.62 -0.40 -2.25 15 17 C -0.09 -1.12 10.03 -39.54 -0.40 -1.51 15 18 C -0.16 -2.09 9.98 -39.48 -0.39 -2.48 15 19 C 0.15 2.47 6.71 -38.75 -0.26 2.21 15 20 O -0.47 -7.67 11.61 -18.85 -0.22 -7.89 15 21 O -0.33 -8.76 10.30 -16.55 -0.17 -8.93 15 22 H 0.27 7.17 8.31 -40.82 -0.34 6.83 15 23 H 0.08 1.76 7.77 -51.93 -0.40 1.35 15 24 H 0.08 1.67 8.14 -51.93 -0.42 1.25 15 25 H 0.14 2.55 7.77 -52.49 -0.41 2.15 15 26 H 0.13 1.33 8.06 -52.48 -0.42 0.91 15 27 H 0.12 1.06 8.06 -52.48 -0.42 0.64 15 28 H 0.13 1.35 8.06 -52.49 -0.42 0.93 15 29 H 0.39 4.86 9.06 45.56 0.41 5.28 15 LS Contribution 262.22 15.07 3.95 3.95 Total: -1.00 -31.88 262.22 -6.41 -38.29 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -2.05 Total: 4.27 kcal Atomic # 6 Polarization: -5.25 SS G_CDS: -3.07 Total: -8.32 kcal Atomic # 7 Polarization: -37.35 SS G_CDS: 0.16 Total: -37.19 kcal Atomic # 8 Polarization: -16.43 SS G_CDS: -0.39 Total: -16.82 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -31.88 -6.41 -38.29 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260598353.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.166 kcal (2) G-P(sol) polarization free energy of solvation -31.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds