Wall clock time and date at job start Mon Mar 30 2020 03:00:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99805 * 2 1 4 4 H 1.48504 * 109.47012 * 179.97438 * 3 2 1 5 5 H 1.48491 * 109.47354 * 299.99488 * 3 2 1 6 6 H 1.48498 * 109.47390 * 59.99933 * 3 2 1 7 7 C 1.37879 * 119.99852 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99612 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99995 * 0.02562 * 7 2 1 10 10 H 1.08999 * 110.92108 * 56.01330 * 9 7 2 11 11 C 1.54813 * 111.04143 * 180.02562 * 9 7 2 12 12 N 1.47594 * 102.01059 * 141.56914 * 11 9 7 13 13 C 1.29744 * 108.42882 * 344.92871 * 12 11 9 14 14 C 1.47776 * 123.09876 * 179.58463 * 13 12 11 15 15 C 1.39566 * 120.17968 * 179.75104 * 14 13 12 16 16 C 1.37862 * 119.91656 * 179.71838 * 15 14 13 17 17 C 1.38493 * 120.27750 * 0.55496 * 16 15 14 18 18 C 1.38096 * 120.36239 * 359.72308 * 17 16 15 19 19 C 1.38664 * 120.07775 * 359.97438 * 18 17 16 20 20 O 1.35716 * 120.14411 * 180.02562 * 19 18 17 21 21 O 1.34945 * 113.80689 * 359.85512 * 13 12 11 22 22 H 0.97004 * 119.99687 * 0.02562 * 1 2 3 23 23 H 1.08995 * 110.92658 * 23.38605 * 11 9 7 24 24 H 1.09003 * 110.95143 * 259.75667 * 11 9 7 25 25 H 1.08001 * 120.04163 * 359.97223 * 15 14 13 26 26 H 1.08006 * 119.86567 * 180.27867 * 16 15 14 27 27 H 1.08007 * 119.81951 * 179.69420 * 17 16 15 28 28 H 1.07999 * 119.96435 * 179.97438 * 18 17 16 29 29 H 0.96705 * 113.99459 * 269.97666 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.5638 -2.5518 -0.8439 11 6 2.2244 -3.7030 0.0018 12 7 1.5374 -4.6525 0.8990 13 6 0.6193 -4.0089 1.5519 14 6 -0.2732 -4.6544 2.5371 15 6 -1.2376 -3.9019 3.2089 16 6 -2.0712 -4.5108 4.1227 17 6 -1.9483 -5.8650 4.3858 18 6 -0.9943 -6.6194 3.7319 19 6 -0.1522 -6.0234 2.8053 20 8 0.7856 -6.7637 2.1615 21 8 0.5505 -2.6968 1.2441 22 1 -0.4850 0.8401 -0.0004 23 1 3.1954 -3.4181 0.4065 24 1 2.3294 -4.1204 -0.9996 25 1 -1.3335 -2.8447 3.0103 26 1 -2.8202 -3.9286 4.6389 27 1 -2.6020 -6.3335 5.1067 28 1 -0.9038 -7.6748 3.9423 29 1 1.6381 -6.8005 2.6166 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260598353.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:54 Heat of formation + Delta-G solvation = -51.784712 kcal Electronic energy + Delta-G solvation = -15772.784248 eV Core-core repulsion = 13046.844688 eV Total energy + Delta-G solvation = -2725.939560 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.73979 -40.30870 -37.48428 -35.14896 -34.10854 -32.89386 -31.00675 -30.14050 -26.94184 -24.17393 -23.76897 -22.83362 -21.17460 -19.12777 -18.97959 -17.87514 -17.16863 -16.68271 -16.47545 -16.23903 -15.66267 -15.21759 -14.86515 -14.22648 -14.12205 -13.69097 -13.55839 -13.11477 -12.95215 -12.86303 -12.48930 -12.43888 -12.02557 -11.71490 -11.35046 -10.90110 -10.81164 -10.26689 -9.70783 -9.32783 -8.36744 -6.62709 -0.15851 0.34401 1.36620 1.37394 1.51772 1.61306 2.29559 2.52016 2.79323 3.07075 3.35868 3.40045 4.02301 4.11465 4.16546 4.37127 4.45362 4.51639 4.60051 4.64806 4.97265 5.03224 5.20833 5.39027 5.43480 5.49704 5.51084 5.65550 5.89919 5.93857 6.51543 6.90797 7.00571 7.16894 8.72568 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.037962 B = 0.007042 C = 0.006136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.410585 B = 3975.360068 C = 4562.508022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.025 3.975 3 Si 0.979 3.021 4 H -0.260 1.260 5 H -0.270 1.270 6 H -0.275 1.275 7 C -0.557 4.557 8 H 0.076 0.924 9 C 0.175 3.825 10 H 0.018 0.982 11 C 0.003 3.997 12 N -0.548 5.548 13 C 0.311 3.689 14 C -0.103 4.103 15 C -0.081 4.081 16 C -0.132 4.132 17 C -0.070 4.070 18 C -0.150 4.150 19 C 0.144 3.856 20 O -0.488 6.488 21 O -0.353 6.353 22 H 0.271 0.729 23 H 0.080 0.920 24 H 0.091 0.909 25 H 0.113 0.887 26 H 0.159 0.841 27 H 0.175 0.825 28 H 0.164 0.836 29 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.043 -9.924 9.937 14.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.179 4.179 3 Si 0.801 3.199 4 H -0.184 1.184 5 H -0.195 1.195 6 H -0.201 1.201 7 C -0.593 4.593 8 H 0.094 0.906 9 C 0.121 3.879 10 H 0.036 0.964 11 C -0.127 4.127 12 N -0.286 5.286 13 C 0.089 3.911 14 C -0.105 4.105 15 C -0.101 4.101 16 C -0.150 4.150 17 C -0.089 4.089 18 C -0.168 4.168 19 C 0.097 3.903 20 O -0.300 6.300 21 O -0.257 6.257 22 H 0.080 0.920 23 H 0.098 0.902 24 H 0.109 0.891 25 H 0.131 0.869 26 H 0.176 0.824 27 H 0.192 0.808 28 H 0.182 0.818 29 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -3.279 -10.498 9.427 14.486 hybrid contribution 0.733 1.974 -0.448 2.153 sum -2.545 -8.525 8.979 12.640 Atomic orbital electron populations 1.70152 1.08033 1.28566 1.46853 1.26143 0.95810 1.03848 0.92060 0.85207 0.78999 0.77441 0.78206 1.18352 1.19461 1.20061 1.21365 0.93385 0.90038 1.54523 0.90623 1.21585 0.89288 0.95931 0.81128 0.96392 1.23968 0.99027 0.91099 0.98583 1.75017 1.10297 1.29511 1.13753 1.24070 0.91875 0.82425 0.92736 1.18685 0.98760 0.93986 0.99094 1.21338 0.93790 0.99835 0.95143 1.21429 0.99497 0.96173 0.97887 1.21668 0.96317 0.92981 0.97892 1.21684 0.97119 1.02224 0.95810 1.18698 0.92774 0.86761 0.92062 1.84719 1.24660 1.69630 1.50973 1.87296 1.73604 1.22595 1.42159 0.92023 0.90162 0.89060 0.86893 0.82375 0.80780 0.81844 0.73808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.88 13.22 21.45 0.28 -53.60 15 2 C 0.03 1.42 5.46 84.65 0.46 1.88 15 3 Si 0.98 43.28 29.54 68.60 2.03 45.30 15 4 H -0.26 -10.98 7.11 99.48 0.71 -10.27 15 5 H -0.27 -11.40 7.11 99.48 0.71 -10.69 15 6 H -0.28 -11.88 7.11 99.48 0.71 -11.18 15 7 C -0.56 -32.11 8.84 25.60 0.23 -31.88 15 8 H 0.08 4.16 7.61 -2.91 -0.02 4.14 15 9 C 0.18 9.91 3.46 30.47 0.11 10.02 15 10 H 0.02 1.12 8.14 -2.39 -0.02 1.10 15 11 C 0.00 0.14 7.67 86.79 0.67 0.80 15 12 N -0.55 -25.76 9.94 -451.00 -4.48 -30.24 15 13 C 0.31 15.06 7.59 87.53 0.66 15.72 15 14 C -0.10 -4.03 5.89 -20.00 -0.12 -4.14 15 15 C -0.08 -2.79 9.67 22.50 0.22 -2.57 15 16 C -0.13 -3.11 10.03 22.24 0.22 -2.89 15 17 C -0.07 -1.30 10.03 22.30 0.22 -1.08 15 18 C -0.15 -3.31 9.98 22.34 0.22 -3.09 15 19 C 0.14 4.54 6.71 22.81 0.15 4.70 15 20 O -0.49 -15.40 11.61 -90.38 -1.05 -16.45 15 21 O -0.35 -20.03 10.30 -82.15 -0.85 -20.88 15 22 H 0.27 14.99 8.31 -92.71 -0.77 14.22 15 23 H 0.08 3.77 7.77 -2.39 -0.02 3.75 15 24 H 0.09 4.05 8.14 -2.39 -0.02 4.03 15 25 H 0.11 4.41 7.77 -2.91 -0.02 4.38 15 26 H 0.16 2.71 8.06 -2.91 -0.02 2.68 15 27 H 0.17 1.65 8.06 -2.91 -0.02 1.63 15 28 H 0.16 2.53 8.06 -2.91 -0.02 2.50 15 29 H 0.40 9.77 9.06 -74.05 -0.67 9.10 15 Total: -1.00 -72.47 262.22 -0.51 -72.98 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: 0.51 Total: 15.40 kcal Atomic # 6 Polarization: -15.57 SS G_CDS: 3.05 Total: -12.52 kcal Atomic # 7 Polarization: -79.64 SS G_CDS: -4.20 Total: -83.84 kcal Atomic # 8 Polarization: -35.43 SS G_CDS: -1.90 Total: -37.33 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.30 kcal Total: -72.47 -0.51 -72.98 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260598353.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.195 kcal (2) G-P(sol) polarization free energy of solvation -72.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds