Wall clock time and date at job start Mon Mar 30 2020 03:27:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 O 1.20965 * 123.60213 * 2 1 4 4 C 1.34377 * 112.71045 * 180.26936 * 3 2 1 5 5 O 1.21744 * 127.34031 * 179.97438 * 4 3 2 6 6 C 1.46820 * 105.31239 * 359.97438 * 4 3 2 7 7 C 1.38888 * 136.31888 * 179.97438 * 6 4 3 8 8 C 1.36861 * 119.57544 * 180.02562 * 7 6 4 9 9 C 1.50698 * 119.76088 * 180.02562 * 8 7 6 10 10 C 1.50700 * 109.47068 * 90.00050 * 9 8 7 11 11 H 1.08003 * 119.99908 * 359.97438 * 10 9 8 12 12 C 1.37880 * 119.99995 * 179.97438 * 10 9 8 13 13 N 1.31514 * 119.99799 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 119.99906 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47420 * 90.00057 * 14 12 10 16 16 H 1.48503 * 109.46927 * 209.99835 * 14 12 10 17 17 H 1.48495 * 109.47105 * 329.99985 * 14 12 10 18 18 C 1.38856 * 120.47808 * 359.97438 * 8 7 6 19 19 C 1.37808 * 120.83387 * 0.02562 * 18 8 7 20 20 C 1.36915 * 123.60830 * 180.29073 * 2 1 3 21 21 H 1.09002 * 109.47276 * 269.70090 * 1 2 3 22 22 H 1.08996 * 109.47648 * 29.70711 * 1 2 3 23 23 H 1.09008 * 109.46646 * 149.70988 * 1 2 3 24 24 H 1.08009 * 120.21713 * 359.97438 * 7 6 4 25 25 H 1.08997 * 109.47310 * 210.00014 * 9 8 7 26 26 H 1.08999 * 109.47441 * 330.00095 * 9 8 7 27 27 H 0.97006 * 119.99672 * 180.02562 * 13 12 10 28 28 H 1.07992 * 119.58067 * 180.02562 * 18 8 7 29 29 H 1.08005 * 120.16269 * 180.02562 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 8 2.1344 1.0075 0.0000 4 6 3.4540 0.7536 -0.0058 5 8 4.3620 1.5646 -0.0077 6 6 3.5672 -0.7102 -0.0094 7 6 4.6009 -1.6377 -0.0160 8 6 4.3088 -2.9748 -0.0181 9 6 5.4273 -3.9848 -0.0246 10 6 5.8053 -4.3248 1.3940 11 1 5.2878 -3.8561 2.2179 12 6 6.8120 -5.2343 1.6401 13 7 7.4418 -5.8055 0.6367 14 14 7.2801 -5.6563 3.3985 15 1 6.4655 -6.8069 3.8651 16 1 8.7202 -6.0142 3.4550 17 1 7.0268 -4.4834 4.2732 18 6 2.9894 -3.4075 -0.0132 19 6 1.9496 -2.5032 -0.0066 20 6 2.2228 -1.1403 -0.0058 21 1 -0.3634 -0.0054 1.0277 22 1 -0.3634 0.8925 -0.5092 23 1 -0.3633 -0.8875 -0.5184 24 1 5.6288 -1.3060 -0.0203 25 1 5.0986 -4.8876 -0.5394 26 1 6.2915 -3.5666 -0.5407 27 1 8.1498 -6.4456 0.8099 28 1 2.7755 -4.4660 -0.0145 29 1 0.9273 -2.8517 -0.0024 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260630264.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:27 Heat of formation + Delta-G solvation = 35.756473 kcal Electronic energy + Delta-G solvation = -15585.074326 eV Core-core repulsion = 12862.930837 eV Total energy + Delta-G solvation = -2722.143489 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -44.19105 -38.47596 -37.88704 -34.17038 -33.12730 -31.58125 -30.63049 -27.83941 -26.40179 -24.34969 -23.40672 -21.52637 -20.34974 -17.94634 -17.77739 -17.66521 -16.35201 -15.54147 -15.15014 -14.50479 -14.17909 -14.13278 -13.68505 -13.50621 -12.75111 -12.67702 -12.55688 -12.10171 -11.63800 -11.36095 -11.12592 -10.68306 -10.58379 -9.94586 -9.85849 -9.61172 -9.06820 -8.74965 -8.45550 -7.13866 -6.07061 -4.11901 1.07827 1.83301 1.97502 2.71891 3.28934 3.35903 3.40173 3.48419 4.14814 4.44279 4.46318 4.82092 4.96496 5.00606 5.18726 5.27093 5.30880 5.59890 5.85588 6.04484 6.23898 6.28550 6.79822 6.84475 6.97161 7.30846 7.50634 7.60636 7.71044 7.87901 8.25470 8.26940 8.93255 9.52643 11.02013 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.036933 B = 0.006176 C = 0.005830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.957090 B = 4532.935888 C = 4801.990013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.121 3.879 2 N -0.452 5.452 3 O -0.072 6.072 4 C 0.494 3.506 5 O -0.464 6.464 6 C -0.266 4.266 7 C 0.000 4.000 8 C -0.083 4.083 9 C 0.053 3.947 10 C -0.516 4.516 11 H 0.058 0.942 12 C 0.059 3.941 13 N -0.893 5.893 14 Si 0.895 3.105 15 H -0.280 1.280 16 H -0.286 1.286 17 H -0.273 1.273 18 C -0.034 4.034 19 C -0.163 4.163 20 C 0.136 3.864 21 H 0.069 0.931 22 H 0.085 0.915 23 H 0.094 0.906 24 H 0.132 0.868 25 H 0.031 0.969 26 H 0.031 0.969 27 H 0.263 0.737 28 H 0.135 0.865 29 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.662 6.733 -2.137 16.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.017 4.017 2 N -0.197 5.197 3 O -0.087 6.087 4 C 0.341 3.659 5 O -0.350 6.350 6 C -0.273 4.273 7 C -0.019 4.019 8 C -0.085 4.085 9 C 0.016 3.984 10 C -0.554 4.554 11 H 0.076 0.924 12 C -0.142 4.142 13 N -0.532 5.532 14 Si 0.722 3.278 15 H -0.206 1.206 16 H -0.211 1.211 17 H -0.198 1.198 18 C -0.053 4.053 19 C -0.185 4.185 20 C 0.033 3.967 21 H 0.087 0.913 22 H 0.104 0.896 23 H 0.113 0.887 24 H 0.150 0.850 25 H 0.050 0.950 26 H 0.049 0.951 27 H 0.072 0.928 28 H 0.153 0.847 29 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -14.414 7.367 -2.176 16.333 hybrid contribution 0.338 -0.208 1.021 1.095 sum -14.076 7.159 -1.155 15.834 Atomic orbital electron populations 1.21921 0.71682 1.04728 1.03382 1.42646 1.03523 0.95538 1.77988 1.84260 1.20551 1.21185 1.82690 1.20687 0.79266 0.89332 0.76586 1.90987 1.36425 1.56914 1.50703 1.20280 0.94554 0.93386 1.19041 1.20093 0.97712 0.91074 0.93015 1.20389 0.96138 0.94529 0.97437 1.18312 0.90418 0.91816 0.97850 1.21088 1.18445 1.24340 0.91519 0.92421 1.25004 0.96054 0.95950 0.97225 1.69951 1.23940 1.28659 1.30603 0.86541 0.77686 0.78765 0.84759 1.20598 1.21143 1.19785 1.21191 0.91623 0.99493 0.92980 1.19847 0.99880 0.87751 1.11068 1.18800 0.89852 0.89263 0.98773 0.91253 0.89606 0.88732 0.85025 0.95029 0.95071 0.92780 0.84721 0.85754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 0.91 11.19 59.85 0.67 1.58 15 2 N -0.45 -6.13 3.72 -65.48 -0.24 -6.37 15 3 O -0.07 -1.14 10.83 -7.85 -0.09 -1.22 15 4 C 0.49 9.23 8.95 34.20 0.31 9.54 15 5 O -0.46 -9.78 18.06 -18.96 -0.34 -10.13 15 6 C -0.27 -4.94 6.54 -105.08 -0.69 -5.63 15 7 C 0.00 0.00 9.67 -39.84 -0.39 -0.39 15 8 C -0.08 -1.70 5.04 -104.89 -0.53 -2.22 15 9 C 0.05 1.29 5.09 -29.04 -0.15 1.14 15 10 C -0.52 -13.94 9.09 -34.44 -0.31 -14.25 15 11 H 0.06 1.55 7.74 -52.48 -0.41 1.14 15 12 C 0.06 1.64 5.46 -17.82 -0.10 1.54 15 13 N -0.89 -25.74 13.29 55.43 0.74 -25.01 15 14 Si 0.89 21.17 29.54 -169.99 -5.02 16.14 15 15 H -0.28 -6.49 7.11 56.52 0.40 -6.09 15 16 H -0.29 -6.72 7.11 56.52 0.40 -6.32 15 17 H -0.27 -6.42 7.11 56.52 0.40 -6.02 15 18 C -0.03 -0.57 9.65 -39.51 -0.38 -0.96 15 19 C -0.16 -2.34 9.94 -39.45 -0.39 -2.73 15 20 C 0.14 2.14 6.83 -84.21 -0.57 1.56 15 21 H 0.07 0.44 8.14 -51.93 -0.42 0.01 15 22 H 0.09 0.50 8.14 -51.93 -0.42 0.08 15 23 H 0.09 0.52 8.05 -51.92 -0.42 0.10 15 24 H 0.13 2.64 8.06 -52.48 -0.42 2.22 15 25 H 0.03 0.79 8.08 -51.93 -0.42 0.37 15 26 H 0.03 0.81 8.08 -51.93 -0.42 0.39 15 27 H 0.26 7.17 8.31 -40.82 -0.34 6.83 15 28 H 0.13 2.08 8.06 -52.49 -0.42 1.66 15 29 H 0.12 1.31 8.06 -52.48 -0.42 0.88 15 LS Contribution 264.92 15.07 3.99 3.99 Total: -1.00 -31.72 264.92 -6.41 -38.13 By element: Atomic # 1 Polarization: -1.82 SS G_CDS: -2.91 Total: -4.73 kcal Atomic # 6 Polarization: -8.28 SS G_CDS: -2.53 Total: -10.81 kcal Atomic # 7 Polarization: -31.87 SS G_CDS: 0.49 Total: -31.37 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: -0.43 Total: -11.35 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -31.72 -6.41 -38.13 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260630264.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.885 kcal (2) G-P(sol) polarization free energy of solvation -31.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds