Wall clock time and date at job start Mon Mar 30 2020 03:01:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99737 * 2 1 4 4 H 1.48501 * 109.47168 * 270.00051 * 3 2 1 5 5 H 1.48502 * 109.47318 * 30.00366 * 3 2 1 6 6 H 1.48500 * 109.47013 * 150.00217 * 3 2 1 7 7 C 1.37874 * 120.00041 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00181 * 359.97438 * 7 2 1 9 9 C 1.50705 * 120.00001 * 180.02562 * 7 2 1 10 10 H 1.08997 * 110.81527 * 56.32755 * 9 7 2 11 11 C 1.54808 * 110.92103 * 179.97438 * 9 7 2 12 12 O 1.44246 * 101.37120 * 141.68616 * 11 9 7 13 13 C 1.34947 * 107.69214 * 335.11007 * 12 11 9 14 14 C 1.47780 * 123.09538 * 197.32029 * 13 12 11 15 15 C 1.39565 * 120.17987 * 0.02562 * 14 13 12 16 16 C 1.37860 * 119.92046 * 180.02562 * 15 14 13 17 17 C 1.38493 * 120.27563 * 359.97438 * 16 15 14 18 18 C 1.38098 * 120.36177 * 0.04044 * 17 16 15 19 19 C 1.38670 * 120.07735 * 359.68267 * 18 17 16 20 20 O 1.35718 * 120.14368 * 180.31995 * 19 18 17 21 21 N 1.29745 * 113.80633 * 17.30057 * 13 12 11 22 22 H 0.97000 * 120.00325 * 0.02562 * 1 2 3 23 23 H 1.08998 * 111.04964 * 23.66369 * 11 9 7 24 24 H 1.09005 * 111.07875 * 259.71929 * 11 9 7 25 25 H 1.08009 * 120.03777 * 0.02949 * 15 14 13 26 26 H 1.07992 * 119.86474 * 180.02562 * 16 15 14 27 27 H 1.07998 * 119.81937 * 180.02562 * 17 16 15 28 28 H 1.07994 * 119.95841 * 179.97438 * 18 17 16 29 29 H 0.96698 * 113.99679 * 270.25523 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 1 3.8986 -0.6297 0.8485 11 6 4.0644 -2.6400 -0.0001 12 8 5.2027 -2.5093 -0.8763 13 6 4.9734 -1.4594 -1.6925 14 6 5.7178 -1.2370 -2.9497 15 6 6.7115 -2.1338 -3.3447 16 6 7.4029 -1.9210 -4.5182 17 6 7.1154 -0.8204 -5.3082 18 6 6.1347 0.0745 -4.9282 19 6 5.4261 -0.1283 -3.7536 20 8 4.4575 0.7468 -3.3822 21 7 4.0391 -0.6634 -1.2721 22 1 -0.4850 0.8400 -0.0004 23 1 3.3340 -3.3383 -0.4088 24 1 4.3735 -2.9416 1.0008 25 1 6.9385 -2.9937 -2.7317 26 1 8.1714 -2.6157 -4.8232 27 1 7.6614 -0.6610 -6.2263 28 1 5.9161 0.9308 -5.5490 29 1 4.7763 1.4771 -2.8346 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260657050.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:33 Heat of formation + Delta-G solvation = -17.812664 kcal Electronic energy + Delta-G solvation = -15988.403304 eV Core-core repulsion = 13263.936883 eV Total energy + Delta-G solvation = -2724.466421 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.35320 -39.13003 -36.31649 -33.47388 -32.29335 -31.45544 -29.85370 -28.53706 -25.19025 -23.30440 -22.37121 -20.64489 -19.93841 -17.94640 -16.95297 -16.77070 -15.63406 -15.28612 -15.19072 -14.71337 -14.23962 -13.80327 -13.66608 -12.79512 -12.66661 -12.26101 -12.17784 -11.83643 -11.47955 -11.24938 -10.69408 -10.27773 -10.20212 -10.02609 -9.71336 -9.17236 -9.09503 -8.61224 -8.56737 -7.78349 -6.12612 -4.21405 1.05073 1.37928 3.06421 3.41798 3.47475 3.56015 3.75827 4.03585 4.48358 4.51949 4.74282 4.99432 5.04539 5.28086 5.43607 5.55016 5.74483 5.80281 5.88840 6.01602 6.18931 6.25180 6.44492 6.48515 6.58622 6.84513 6.87158 7.19544 7.57864 8.04730 8.34621 8.57125 8.84204 9.49123 10.97711 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.032039 B = 0.009079 C = 0.007550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.737252 B = 3083.444235 C = 3707.934075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.087 3.913 3 Si 0.909 3.091 4 H -0.264 1.264 5 H -0.302 1.302 6 H -0.273 1.273 7 C -0.514 4.514 8 H 0.078 0.922 9 C 0.114 3.886 10 H 0.064 0.936 11 C 0.035 3.965 12 O -0.362 6.362 13 C 0.282 3.718 14 C -0.050 4.050 15 C -0.074 4.074 16 C -0.140 4.140 17 C -0.096 4.096 18 C -0.156 4.156 19 C 0.153 3.847 20 O -0.468 6.468 21 N -0.474 5.474 22 H 0.266 0.734 23 H 0.077 0.923 24 H 0.094 0.906 25 H 0.133 0.867 26 H 0.126 0.874 27 H 0.125 0.875 28 H 0.131 0.869 29 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.178 -0.758 -7.520 16.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.118 4.118 3 Si 0.738 3.262 4 H -0.189 1.189 5 H -0.230 1.230 6 H -0.199 1.199 7 C -0.552 4.552 8 H 0.096 0.904 9 C 0.007 3.993 10 H 0.081 0.919 11 C -0.041 4.041 12 O -0.268 6.268 13 C 0.057 3.943 14 C -0.052 4.052 15 C -0.094 4.094 16 C -0.158 4.158 17 C -0.115 4.115 18 C -0.174 4.174 19 C 0.105 3.895 20 O -0.278 6.278 21 N -0.207 5.207 22 H 0.076 0.924 23 H 0.095 0.905 24 H 0.113 0.887 25 H 0.151 0.849 26 H 0.144 0.856 27 H 0.143 0.857 28 H 0.149 0.851 29 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 14.277 -0.386 -7.897 16.320 hybrid contribution 0.596 0.413 0.708 1.013 sum 14.873 0.026 -7.189 16.519 Atomic orbital electron populations 1.69916 1.06601 1.27535 1.48835 1.24966 0.94668 0.99829 0.92334 0.86300 0.78988 0.81861 0.79042 1.18932 1.23006 1.19872 1.20625 0.86217 0.95068 1.53281 0.90396 1.21815 0.98511 0.89289 0.89650 0.91860 1.24541 0.85592 1.00968 0.93021 1.86816 1.43062 1.49658 1.47236 1.22979 0.93316 0.86994 0.90973 1.18382 0.97391 0.97789 0.91613 1.21209 0.93803 0.98144 0.96270 1.21018 1.01066 0.98535 0.95193 1.21087 0.96961 0.94154 0.99334 1.21376 0.96942 1.01485 0.97629 1.18506 0.88088 0.90516 0.92357 1.84878 1.31824 1.39125 1.71940 1.75256 1.06789 1.26518 1.12135 0.92407 0.90483 0.88747 0.84865 0.85594 0.85687 0.85094 0.75256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.73 13.96 55.43 0.77 -26.96 15 2 C 0.09 2.58 5.47 -17.82 -0.10 2.49 15 3 Si 0.91 23.27 26.56 -169.99 -4.52 18.76 15 4 H -0.26 -6.69 7.11 56.52 0.40 -6.29 15 5 H -0.30 -7.63 7.11 56.52 0.40 -7.23 15 6 H -0.27 -6.78 6.44 56.52 0.36 -6.42 15 7 C -0.51 -14.87 9.36 -34.44 -0.32 -15.19 15 8 H 0.08 2.39 7.86 -52.49 -0.41 1.98 15 9 C 0.11 2.84 2.93 -67.53 -0.20 2.65 15 10 H 0.06 1.58 7.00 -51.93 -0.36 1.22 15 11 C 0.04 0.74 7.71 38.11 0.29 1.04 15 12 O -0.36 -7.49 10.68 -16.56 -0.18 -7.67 15 13 C 0.28 6.05 7.58 -14.53 -0.11 5.94 15 14 C -0.05 -0.89 5.89 -104.83 -0.62 -1.51 15 15 C -0.07 -1.06 9.67 -39.22 -0.38 -1.44 15 16 C -0.14 -1.60 10.03 -39.63 -0.40 -2.00 15 17 C -0.10 -1.07 10.03 -39.54 -0.40 -1.46 15 18 C -0.16 -2.04 9.98 -39.47 -0.39 -2.43 15 19 C 0.15 2.57 6.71 -38.75 -0.26 2.31 15 20 O -0.47 -8.77 11.61 -18.86 -0.22 -8.99 15 21 N -0.47 -11.53 7.95 -52.44 -0.42 -11.94 15 22 H 0.27 7.75 8.31 -40.82 -0.34 7.41 15 23 H 0.08 1.64 7.78 -51.93 -0.40 1.24 15 24 H 0.09 1.69 8.14 -51.93 -0.42 1.27 15 25 H 0.13 1.78 7.77 -52.48 -0.41 1.37 15 26 H 0.13 1.06 8.06 -52.49 -0.42 0.64 15 27 H 0.13 0.99 8.06 -52.49 -0.42 0.57 15 28 H 0.13 1.45 8.06 -52.49 -0.42 1.02 15 29 H 0.39 6.06 9.06 45.56 0.41 6.47 15 LS Contribution 256.86 15.07 3.87 3.87 Total: -1.00 -33.69 256.86 -5.60 -39.29 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -2.04 Total: 3.25 kcal Atomic # 6 Polarization: -6.73 SS G_CDS: -2.88 Total: -9.61 kcal Atomic # 7 Polarization: -39.26 SS G_CDS: 0.36 Total: -38.90 kcal Atomic # 8 Polarization: -16.26 SS G_CDS: -0.40 Total: -16.66 kcal Atomic # 14 Polarization: 23.27 SS G_CDS: -4.52 Total: 18.76 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -33.69 -5.60 -39.29 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260657050.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.480 kcal (2) G-P(sol) polarization free energy of solvation -33.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds