Wall clock time and date at job start Mon Mar 30 2020 03:01:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99737 * 2 1 4 4 H 1.48501 * 109.47168 * 270.00051 * 3 2 1 5 5 H 1.48502 * 109.47318 * 30.00366 * 3 2 1 6 6 H 1.48500 * 109.47013 * 150.00217 * 3 2 1 7 7 C 1.37874 * 120.00041 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00181 * 359.97438 * 7 2 1 9 9 C 1.50705 * 120.00001 * 180.02562 * 7 2 1 10 10 H 1.08997 * 110.81527 * 56.32755 * 9 7 2 11 11 C 1.54808 * 110.92103 * 179.97438 * 9 7 2 12 12 O 1.44246 * 101.37120 * 141.68616 * 11 9 7 13 13 C 1.34947 * 107.69214 * 335.11007 * 12 11 9 14 14 C 1.47780 * 123.09538 * 197.32029 * 13 12 11 15 15 C 1.39565 * 120.17987 * 0.02562 * 14 13 12 16 16 C 1.37860 * 119.92046 * 180.02562 * 15 14 13 17 17 C 1.38493 * 120.27563 * 359.97438 * 16 15 14 18 18 C 1.38098 * 120.36177 * 0.04044 * 17 16 15 19 19 C 1.38670 * 120.07735 * 359.68267 * 18 17 16 20 20 O 1.35718 * 120.14368 * 180.31995 * 19 18 17 21 21 N 1.29745 * 113.80633 * 17.30057 * 13 12 11 22 22 H 0.97000 * 120.00325 * 0.02562 * 1 2 3 23 23 H 1.08998 * 111.04964 * 23.66369 * 11 9 7 24 24 H 1.09005 * 111.07875 * 259.71929 * 11 9 7 25 25 H 1.08009 * 120.03777 * 0.02949 * 15 14 13 26 26 H 1.07992 * 119.86474 * 180.02562 * 16 15 14 27 27 H 1.07998 * 119.81937 * 180.02562 * 17 16 15 28 28 H 1.07994 * 119.95841 * 179.97438 * 18 17 16 29 29 H 0.96698 * 113.99679 * 270.25523 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 1 3.8986 -0.6297 0.8485 11 6 4.0644 -2.6400 -0.0001 12 8 5.2027 -2.5093 -0.8763 13 6 4.9734 -1.4594 -1.6925 14 6 5.7178 -1.2370 -2.9497 15 6 6.7115 -2.1338 -3.3447 16 6 7.4029 -1.9210 -4.5182 17 6 7.1154 -0.8204 -5.3082 18 6 6.1347 0.0745 -4.9282 19 6 5.4261 -0.1283 -3.7536 20 8 4.4575 0.7468 -3.3822 21 7 4.0391 -0.6634 -1.2721 22 1 -0.4850 0.8400 -0.0004 23 1 3.3340 -3.3383 -0.4088 24 1 4.3735 -2.9416 1.0008 25 1 6.9385 -2.9937 -2.7317 26 1 8.1714 -2.6157 -4.8232 27 1 7.6614 -0.6610 -6.2263 28 1 5.9161 0.9308 -5.5490 29 1 4.7763 1.4771 -2.8346 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260657050.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:32 Heat of formation + Delta-G solvation = -45.453245 kcal Electronic energy + Delta-G solvation = -15989.601889 eV Core-core repulsion = 13263.936883 eV Total energy + Delta-G solvation = -2725.665007 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.96871 -40.35994 -37.52054 -35.48219 -34.03778 -33.03078 -31.06266 -30.02958 -27.20306 -24.57131 -23.56795 -22.46529 -21.40494 -19.20222 -19.09433 -18.19840 -17.26262 -16.59413 -16.51921 -16.16545 -16.02811 -15.21548 -14.89936 -14.78353 -14.16673 -14.14412 -13.54024 -12.98380 -12.77846 -12.76425 -12.40640 -12.22888 -12.10915 -11.82212 -11.40846 -11.06297 -10.68601 -10.44906 -9.71437 -9.32118 -8.39737 -6.52247 -0.13139 0.35033 1.33265 1.44725 1.47878 1.63766 2.29965 2.37991 2.80052 2.90485 3.35512 3.42737 3.95613 3.99692 4.15144 4.16780 4.43365 4.47014 4.50720 4.63742 4.82187 4.95245 5.03487 5.26029 5.42238 5.45457 5.51129 5.63537 5.90149 6.06416 6.49840 6.85325 6.93187 7.22584 8.74331 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.032039 B = 0.009079 C = 0.007550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.737252 B = 3083.444235 C = 3707.934075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.032 3.968 3 Si 0.974 3.026 4 H -0.262 1.262 5 H -0.297 1.297 6 H -0.263 1.263 7 C -0.521 4.521 8 H 0.042 0.958 9 C 0.109 3.891 10 H 0.061 0.939 11 C 0.040 3.960 12 O -0.354 6.354 13 C 0.298 3.702 14 C -0.095 4.095 15 C -0.074 4.074 16 C -0.128 4.128 17 C -0.074 4.074 18 C -0.156 4.156 19 C 0.131 3.869 20 O -0.495 6.495 21 N -0.520 5.520 22 H 0.269 0.731 23 H 0.068 0.932 24 H 0.129 0.871 25 H 0.139 0.861 26 H 0.167 0.833 27 H 0.170 0.830 28 H 0.151 0.849 29 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.631 -0.727 -9.510 20.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.168 4.168 3 Si 0.800 3.200 4 H -0.187 1.187 5 H -0.224 1.224 6 H -0.187 1.187 7 C -0.559 4.559 8 H 0.060 0.940 9 C 0.002 3.998 10 H 0.079 0.921 11 C -0.036 4.036 12 O -0.260 6.260 13 C 0.073 3.927 14 C -0.097 4.097 15 C -0.094 4.094 16 C -0.146 4.146 17 C -0.093 4.093 18 C -0.174 4.174 19 C 0.084 3.916 20 O -0.307 6.307 21 N -0.254 5.254 22 H 0.078 0.922 23 H 0.086 0.914 24 H 0.147 0.853 25 H 0.157 0.843 26 H 0.185 0.815 27 H 0.188 0.812 28 H 0.169 0.831 29 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 17.752 -0.375 -9.888 20.324 hybrid contribution -0.331 0.264 1.173 1.247 sum 17.421 -0.110 -8.714 19.480 Atomic orbital electron populations 1.70035 1.08234 1.28525 1.51003 1.25823 0.95372 1.03484 0.92136 0.85283 0.78000 0.77565 0.79140 1.18735 1.22416 1.18713 1.20850 0.88837 0.93679 1.52492 0.93968 1.21638 0.95959 0.91744 0.90480 0.92139 1.24520 0.85634 0.98630 0.94816 1.86822 1.42563 1.49517 1.47059 1.23716 0.92070 0.85505 0.91361 1.18582 0.99730 1.00248 0.91131 1.21406 0.92912 0.97556 0.97548 1.21489 1.00668 0.98977 0.93441 1.21647 0.95174 0.92377 1.00070 1.21643 0.96760 1.02738 0.96248 1.18886 0.88770 0.90206 0.93771 1.84835 1.33634 1.39864 1.72333 1.75154 1.09729 1.28308 1.12159 0.92192 0.91359 0.85276 0.84287 0.81547 0.81248 0.83092 0.74544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.62 13.96 21.45 0.30 -60.32 15 2 C 0.03 1.96 5.47 84.65 0.46 2.42 15 3 Si 0.97 49.41 26.56 68.60 1.82 51.23 15 4 H -0.26 -13.10 7.11 99.48 0.71 -12.39 15 5 H -0.30 -14.55 7.11 99.48 0.71 -13.85 15 6 H -0.26 -12.68 6.44 99.48 0.64 -12.04 15 7 C -0.52 -31.33 9.36 25.60 0.24 -31.09 15 8 H 0.04 2.75 7.86 -2.91 -0.02 2.72 15 9 C 0.11 5.54 2.93 44.66 0.13 5.67 15 10 H 0.06 3.04 7.00 -2.39 -0.02 3.03 15 11 C 0.04 1.70 7.71 72.60 0.56 2.26 15 12 O -0.35 -14.37 10.68 -82.17 -0.88 -15.25 15 13 C 0.30 12.70 7.58 87.53 0.66 13.36 15 14 C -0.10 -3.27 5.89 -20.00 -0.12 -3.39 15 15 C -0.07 -1.91 9.67 22.50 0.22 -1.69 15 16 C -0.13 -2.26 10.03 22.24 0.22 -2.03 15 17 C -0.07 -1.22 10.03 22.30 0.22 -1.00 15 18 C -0.16 -3.53 9.98 22.34 0.22 -3.31 15 19 C 0.13 4.22 6.71 22.81 0.15 4.38 15 20 O -0.50 -18.61 11.61 -90.40 -1.05 -19.66 15 21 N -0.52 -25.55 7.95 -434.33 -3.45 -29.00 15 22 H 0.27 16.21 8.31 -92.71 -0.77 15.44 15 23 H 0.07 2.97 7.78 -2.39 -0.02 2.96 15 24 H 0.13 4.47 8.14 -2.38 -0.02 4.45 15 25 H 0.14 3.32 7.77 -2.91 -0.02 3.30 15 26 H 0.17 1.66 8.06 -2.91 -0.02 1.63 15 27 H 0.17 1.40 8.06 -2.91 -0.02 1.38 15 28 H 0.15 2.77 8.06 -2.91 -0.02 2.75 15 29 H 0.40 12.50 9.06 -74.06 -0.67 11.83 15 Total: -1.00 -76.39 256.86 0.16 -76.23 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: 0.44 Total: 11.20 kcal Atomic # 6 Polarization: -17.41 SS G_CDS: 2.98 Total: -14.43 kcal Atomic # 7 Polarization: -86.17 SS G_CDS: -3.15 Total: -89.32 kcal Atomic # 8 Polarization: -32.99 SS G_CDS: -1.93 Total: -34.91 kcal Atomic # 14 Polarization: 49.41 SS G_CDS: 1.82 Total: 51.23 kcal Total: -76.39 0.16 -76.23 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260657050.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.777 kcal (2) G-P(sol) polarization free energy of solvation -76.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds