Wall clock time and date at job start Mon Mar 30 2020 03:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 120.00304 * 2 1 4 4 H 1.48500 * 109.47070 * 269.99949 * 3 2 1 5 5 H 1.48502 * 109.47198 * 29.99815 * 3 2 1 6 6 H 1.48503 * 109.47143 * 149.99997 * 3 2 1 7 7 C 1.37877 * 119.99473 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99915 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00309 * 359.97438 * 7 2 1 10 10 H 1.09002 * 110.85983 * 300.70368 * 9 7 2 11 11 C 1.54731 * 110.96994 * 176.90983 * 9 7 2 12 12 C 1.51690 * 102.55605 * 266.08213 * 11 9 7 13 13 C 1.47474 * 125.87200 * 164.60019 * 12 11 9 14 14 C 1.39644 * 120.18558 * 0.02562 * 13 12 11 15 15 C 1.37879 * 119.90242 * 180.02562 * 14 13 12 16 16 C 1.38471 * 120.28110 * 359.97438 * 15 14 13 17 17 C 1.38148 * 120.37955 * 0.02562 * 16 15 14 18 18 C 1.38598 * 120.08745 * 359.71377 * 17 16 15 19 19 O 1.35766 * 120.14153 * 180.28125 * 18 17 16 20 20 N 1.29165 * 108.25761 * 344.60980 * 12 11 9 21 21 O 1.41386 * 112.85481 * 359.67155 * 20 12 11 22 22 H 0.97001 * 119.99874 * 0.02562 * 1 2 3 23 23 H 1.09003 * 110.79594 * 24.35433 * 11 9 7 24 24 H 1.09005 * 110.79448 * 147.62900 * 11 9 7 25 25 H 1.07995 * 120.04833 * 0.02562 * 14 13 12 26 26 H 1.08001 * 119.85855 * 179.97438 * 15 14 13 27 27 H 1.08005 * 119.81028 * 179.97438 * 16 15 14 28 28 H 1.07996 * 119.95641 * 179.97438 * 17 16 15 29 29 H 0.96702 * 113.99886 * 270.28015 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4400 0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 1 0.6067 -2.5755 0.8755 11 6 2.2234 -3.7001 -0.0791 12 6 2.2825 -3.9797 -1.5688 13 6 3.2929 -4.8077 -2.2532 14 6 4.3135 -5.4180 -1.5211 15 6 5.2553 -6.1905 -2.1670 16 6 5.1936 -6.3646 -3.5394 17 6 4.1889 -5.7663 -4.2750 18 6 3.2310 -4.9909 -3.6409 19 8 2.2399 -4.4070 -4.3621 20 7 1.2960 -3.3676 -2.1349 21 8 0.4905 -2.6569 -1.2156 22 1 -0.4850 0.8401 -0.0004 23 1 3.2071 -3.4271 0.3028 24 1 1.8240 -4.5575 0.4628 25 1 4.3650 -5.2851 -0.4506 26 1 6.0446 -6.6619 -1.6002 27 1 5.9356 -6.9710 -4.0376 28 1 4.1475 -5.9063 -5.3451 29 1 2.4589 -3.5234 -4.6881 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260664819.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:46 Heat of formation + Delta-G solvation = 1.603273 kcal Electronic energy + Delta-G solvation = -15768.989025 eV Core-core repulsion = 13045.364542 eV Total energy + Delta-G solvation = -2723.624483 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.74751 -38.29532 -36.37999 -33.06491 -32.34327 -30.14981 -29.56580 -29.03166 -25.32497 -23.18160 -22.43995 -20.88249 -19.36686 -17.96036 -16.96928 -16.03841 -15.43817 -15.20760 -14.71307 -14.55828 -14.06510 -13.80651 -13.46008 -12.58670 -12.37285 -12.20085 -11.86329 -11.50898 -11.36880 -11.00502 -10.96572 -10.64259 -10.39360 -10.08803 -9.70553 -9.50599 -8.91041 -8.65733 -8.59742 -7.69130 -6.13590 -4.30047 1.04806 1.36343 2.96629 3.24665 3.31004 3.33130 3.88614 4.24044 4.33984 4.45109 4.77591 4.98306 5.09916 5.17640 5.32431 5.53164 5.76725 5.88367 6.01787 6.04448 6.10273 6.28047 6.40251 6.50479 6.70469 6.85013 7.08562 7.26828 7.73876 7.93840 8.00712 8.58805 8.82832 9.43591 10.93189 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.035073 B = 0.006916 C = 0.006748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.149721 B = 4047.362578 C = 4148.520005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.081 3.919 3 Si 0.897 3.103 4 H -0.278 1.278 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.553 4.553 8 H 0.062 0.938 9 C 0.174 3.826 10 H 0.074 0.926 11 C -0.136 4.136 12 C 0.072 3.928 13 C -0.039 4.039 14 C -0.082 4.082 15 C -0.134 4.134 16 C -0.104 4.104 17 C -0.151 4.151 18 C 0.133 3.867 19 O -0.480 6.480 20 N -0.264 5.264 21 O -0.177 6.177 22 H 0.265 0.735 23 H 0.085 0.915 24 H 0.071 0.929 25 H 0.132 0.868 26 H 0.126 0.874 27 H 0.124 0.876 28 H 0.129 0.871 29 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.352 -10.369 -4.396 15.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.126 4.126 3 Si 0.724 3.276 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.591 4.591 8 H 0.080 0.920 9 C 0.118 3.882 10 H 0.091 0.909 11 C -0.176 4.176 12 C -0.117 4.117 13 C -0.040 4.040 14 C -0.102 4.102 15 C -0.152 4.152 16 C -0.123 4.123 17 C -0.170 4.170 18 C 0.086 3.914 19 O -0.291 6.291 20 N 0.000 5.000 21 O -0.203 6.203 22 H 0.075 0.925 23 H 0.104 0.896 24 H 0.089 0.911 25 H 0.149 0.851 26 H 0.144 0.856 27 H 0.142 0.858 28 H 0.146 0.854 29 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 9.103 -10.450 -5.222 14.810 hybrid contribution 1.072 1.328 0.776 1.875 sum 10.176 -9.122 -4.446 14.371 Atomic orbital electron populations 1.70003 1.06117 1.27182 1.46523 1.25056 0.94806 0.99505 0.93258 0.86532 0.79859 0.82867 0.78368 1.20370 1.20876 1.19653 1.21268 0.92909 0.90242 1.54678 0.91969 1.21296 0.89157 0.91660 0.86088 0.90867 1.23046 1.02980 0.99606 0.91949 1.23747 0.95935 0.97309 0.94706 1.18451 0.94700 0.98404 0.92465 1.21179 0.93081 0.95792 1.00192 1.21021 0.99486 1.00028 0.94634 1.21057 0.97901 0.99216 0.94104 1.21353 0.94696 1.00437 1.00505 1.18641 0.88221 0.95594 0.88991 1.84782 1.38367 1.35085 1.70852 1.78096 1.01832 1.01440 1.18675 1.91315 1.34083 1.70324 1.24618 0.92493 0.89637 0.91067 0.85058 0.85597 0.85776 0.85351 0.75015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.65 13.08 55.43 0.73 -24.92 15 2 C 0.08 2.28 5.44 -17.82 -0.10 2.18 15 3 Si 0.90 21.34 29.54 -169.99 -5.02 16.32 15 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 15 5 H -0.28 -6.61 7.11 56.52 0.40 -6.21 15 6 H -0.27 -6.27 7.11 56.52 0.40 -5.87 15 7 C -0.55 -15.44 8.84 -34.44 -0.30 -15.75 15 8 H 0.06 1.69 7.60 -52.48 -0.40 1.29 15 9 C 0.17 4.56 3.57 -26.97 -0.10 4.46 15 10 H 0.07 1.97 8.14 -51.93 -0.42 1.55 15 11 C -0.14 -2.86 5.80 -26.48 -0.15 -3.01 15 12 C 0.07 1.52 7.14 -79.46 -0.57 0.96 15 13 C -0.04 -0.67 5.88 -104.91 -0.62 -1.29 15 14 C -0.08 -1.14 9.61 -39.19 -0.38 -1.52 15 15 C -0.13 -1.51 10.03 -39.63 -0.40 -1.90 15 16 C -0.10 -1.13 10.03 -39.53 -0.40 -1.53 15 17 C -0.15 -1.92 9.98 -39.48 -0.39 -2.31 15 18 C 0.13 2.13 6.72 -38.75 -0.26 1.87 15 19 O -0.48 -8.13 11.81 -19.01 -0.22 -8.36 15 20 N -0.26 -6.51 10.96 35.27 0.39 -6.13 15 21 O -0.18 -5.00 11.96 -11.37 -0.14 -5.14 15 22 H 0.27 7.41 8.31 -40.82 -0.34 7.07 15 23 H 0.09 1.65 7.58 -51.93 -0.39 1.26 15 24 H 0.07 1.32 8.14 -51.93 -0.42 0.90 15 25 H 0.13 1.63 7.37 -52.49 -0.39 1.25 15 26 H 0.13 1.05 8.06 -52.49 -0.42 0.63 15 27 H 0.12 0.97 8.06 -52.48 -0.42 0.55 15 28 H 0.13 1.35 8.06 -52.49 -0.42 0.93 15 29 H 0.39 5.45 9.06 45.56 0.41 5.86 15 LS Contribution 262.07 15.07 3.95 3.95 Total: -1.00 -33.13 262.07 -6.00 -39.13 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: -2.01 Total: 2.98 kcal Atomic # 6 Polarization: -14.17 SS G_CDS: -3.66 Total: -17.83 kcal Atomic # 7 Polarization: -32.16 SS G_CDS: 1.11 Total: -31.05 kcal Atomic # 8 Polarization: -13.13 SS G_CDS: -0.36 Total: -13.49 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -33.13 -6.00 -39.13 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260664819.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.733 kcal (2) G-P(sol) polarization free energy of solvation -33.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.129 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds