Wall clock time and date at job start Mon Mar 30 2020 03:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 120.00304 * 2 1 4 4 H 1.48500 * 109.47070 * 269.99949 * 3 2 1 5 5 H 1.48502 * 109.47198 * 29.99815 * 3 2 1 6 6 H 1.48503 * 109.47143 * 149.99997 * 3 2 1 7 7 C 1.37877 * 119.99473 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99915 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00309 * 359.97438 * 7 2 1 10 10 H 1.09002 * 110.85983 * 300.70368 * 9 7 2 11 11 C 1.54731 * 110.96994 * 176.90983 * 9 7 2 12 12 C 1.51690 * 102.55605 * 266.08213 * 11 9 7 13 13 C 1.47474 * 125.87200 * 164.60019 * 12 11 9 14 14 C 1.39644 * 120.18558 * 0.02562 * 13 12 11 15 15 C 1.37879 * 119.90242 * 180.02562 * 14 13 12 16 16 C 1.38471 * 120.28110 * 359.97438 * 15 14 13 17 17 C 1.38148 * 120.37955 * 0.02562 * 16 15 14 18 18 C 1.38598 * 120.08745 * 359.71377 * 17 16 15 19 19 O 1.35766 * 120.14153 * 180.28125 * 18 17 16 20 20 N 1.29165 * 108.25761 * 344.60980 * 12 11 9 21 21 O 1.41386 * 112.85481 * 359.67155 * 20 12 11 22 22 H 0.97001 * 119.99874 * 0.02562 * 1 2 3 23 23 H 1.09003 * 110.79594 * 24.35433 * 11 9 7 24 24 H 1.09005 * 110.79448 * 147.62900 * 11 9 7 25 25 H 1.07995 * 120.04833 * 0.02562 * 14 13 12 26 26 H 1.08001 * 119.85855 * 179.97438 * 15 14 13 27 27 H 1.08005 * 119.81028 * 179.97438 * 16 15 14 28 28 H 1.07996 * 119.95641 * 179.97438 * 17 16 15 29 29 H 0.96702 * 113.99886 * 270.28015 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4400 0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 1 0.6067 -2.5755 0.8755 11 6 2.2234 -3.7001 -0.0791 12 6 2.2825 -3.9797 -1.5688 13 6 3.2929 -4.8077 -2.2532 14 6 4.3135 -5.4180 -1.5211 15 6 5.2553 -6.1905 -2.1670 16 6 5.1936 -6.3646 -3.5394 17 6 4.1889 -5.7663 -4.2750 18 6 3.2310 -4.9909 -3.6409 19 8 2.2399 -4.4070 -4.3621 20 7 1.2960 -3.3676 -2.1349 21 8 0.4905 -2.6569 -1.2156 22 1 -0.4850 0.8401 -0.0004 23 1 3.2071 -3.4271 0.3028 24 1 1.8240 -4.5575 0.4628 25 1 4.3650 -5.2851 -0.4506 26 1 6.0446 -6.6619 -1.6002 27 1 5.9356 -6.9710 -4.0376 28 1 4.1475 -5.9063 -5.3451 29 1 2.4589 -3.5234 -4.6881 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260664819.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:46 Heat of formation + Delta-G solvation = -22.461331 kcal Electronic energy + Delta-G solvation = -15770.032545 eV Core-core repulsion = 13045.364542 eV Total energy + Delta-G solvation = -2724.668003 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.05886 -39.90427 -37.52120 -35.00348 -34.05459 -31.52674 -31.23994 -30.29399 -27.35871 -24.38642 -23.73267 -22.60045 -20.80503 -19.27938 -18.80065 -17.43968 -16.84308 -16.61995 -16.46417 -16.00782 -15.69661 -15.14676 -14.74286 -14.28982 -14.00691 -13.53212 -13.30899 -12.99219 -12.85319 -12.78896 -12.49303 -12.39111 -11.93303 -11.79364 -11.56686 -11.10120 -10.77281 -10.40939 -9.70750 -9.27916 -8.25770 -6.50369 -0.14163 0.36493 1.35402 1.37348 1.48354 1.52225 2.32609 2.55546 2.78981 3.04790 3.29109 3.36289 3.91824 4.11954 4.16431 4.21565 4.43203 4.49805 4.53455 4.69635 4.93163 5.04915 5.15577 5.27922 5.47426 5.49497 5.57143 5.59915 5.91623 5.92661 6.55786 6.80439 6.89655 7.28251 8.81853 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.035073 B = 0.006916 C = 0.006748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.149721 B = 4047.362578 C = 4148.520005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.023 3.977 3 Si 0.968 3.032 4 H -0.279 1.279 5 H -0.277 1.277 6 H -0.256 1.256 7 C -0.567 4.567 8 H 0.066 0.934 9 C 0.160 3.840 10 H 0.049 0.951 11 C -0.127 4.127 12 C 0.102 3.898 13 C -0.087 4.087 14 C -0.079 4.079 15 C -0.125 4.125 16 C -0.081 4.081 17 C -0.153 4.153 18 C 0.114 3.886 19 O -0.502 6.502 20 N -0.308 5.308 21 O -0.231 6.231 22 H 0.266 0.734 23 H 0.106 0.894 24 H 0.097 0.903 25 H 0.144 0.856 26 H 0.166 0.834 27 H 0.168 0.832 28 H 0.150 0.850 29 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.095 -12.041 -4.811 19.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.180 4.180 3 Si 0.792 3.208 4 H -0.204 1.204 5 H -0.202 1.202 6 H -0.179 1.179 7 C -0.605 4.605 8 H 0.084 0.916 9 C 0.104 3.896 10 H 0.067 0.933 11 C -0.167 4.167 12 C -0.087 4.087 13 C -0.088 4.088 14 C -0.099 4.099 15 C -0.143 4.143 16 C -0.100 4.100 17 C -0.171 4.171 18 C 0.067 3.933 19 O -0.314 6.314 20 N -0.050 5.050 21 O -0.253 6.253 22 H 0.075 0.925 23 H 0.124 0.876 24 H 0.115 0.885 25 H 0.162 0.838 26 H 0.184 0.816 27 H 0.185 0.815 28 H 0.168 0.832 29 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 12.833 -12.113 -5.609 18.517 hybrid contribution 0.095 1.605 0.834 1.811 sum 12.928 -10.508 -4.776 17.331 Atomic orbital electron populations 1.70154 1.07949 1.28062 1.48069 1.26017 0.95647 1.03502 0.92806 0.85420 0.79008 0.78078 0.78306 1.20437 1.20170 1.17939 1.21637 0.93214 0.91430 1.54175 0.91557 1.21261 0.89775 0.93435 0.85151 0.93336 1.22968 1.02728 0.98482 0.92474 1.24457 0.94635 0.94732 0.94837 1.18619 0.95853 1.00966 0.93393 1.21448 0.92303 0.95282 1.00894 1.21498 0.99169 0.98502 0.95143 1.21628 0.97110 0.97192 0.94052 1.21627 0.94115 0.99574 1.01825 1.19025 0.88995 0.96475 0.88812 1.84744 1.39773 1.35742 1.71121 1.78127 1.04168 1.04857 1.17816 1.91234 1.36280 1.72148 1.25599 0.92514 0.87595 0.88500 0.83815 0.81601 0.81492 0.83249 0.74277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.16 13.08 21.45 0.28 -55.88 15 2 C 0.02 1.32 5.44 84.65 0.46 1.78 15 3 Si 0.97 44.48 29.54 68.60 2.03 46.51 15 4 H -0.28 -12.72 7.11 99.48 0.71 -12.02 15 5 H -0.28 -12.28 7.11 99.48 0.71 -11.57 15 6 H -0.26 -10.95 7.11 99.48 0.71 -10.24 15 7 C -0.57 -32.48 8.84 25.60 0.23 -32.25 15 8 H 0.07 3.62 7.60 -2.91 -0.02 3.59 15 9 C 0.16 8.76 3.57 30.44 0.11 8.87 15 10 H 0.05 2.80 8.14 -2.39 -0.02 2.78 15 11 C -0.13 -5.35 5.80 30.75 0.18 -5.17 15 12 C 0.10 4.40 7.14 45.70 0.33 4.73 15 13 C -0.09 -2.89 5.88 -20.05 -0.12 -3.01 15 14 C -0.08 -1.93 9.61 22.52 0.22 -1.71 15 15 C -0.13 -2.13 10.03 22.24 0.22 -1.91 15 16 C -0.08 -1.31 10.03 22.30 0.22 -1.08 15 17 C -0.15 -3.34 9.98 22.33 0.22 -3.12 15 18 C 0.11 3.52 6.72 22.81 0.15 3.68 15 19 O -0.50 -17.31 11.81 -90.93 -1.07 -18.38 15 20 N -0.31 -15.91 10.96 -42.31 -0.46 -16.37 15 21 O -0.23 -13.89 11.96 -38.31 -0.46 -14.34 15 22 H 0.27 15.47 8.31 -92.71 -0.77 14.70 15 23 H 0.11 3.97 7.58 -2.39 -0.02 3.95 15 24 H 0.10 3.54 8.14 -2.38 -0.02 3.52 15 25 H 0.14 3.05 7.37 -2.91 -0.02 3.03 15 26 H 0.17 1.58 8.06 -2.91 -0.02 1.56 15 27 H 0.17 1.36 8.06 -2.91 -0.02 1.34 15 28 H 0.15 2.59 8.06 -2.91 -0.02 2.56 15 29 H 0.40 11.62 9.06 -74.06 -0.67 10.95 15 Total: -1.00 -76.56 262.07 3.04 -73.52 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: 0.51 Total: 14.15 kcal Atomic # 6 Polarization: -31.42 SS G_CDS: 2.22 Total: -29.20 kcal Atomic # 7 Polarization: -72.07 SS G_CDS: -0.18 Total: -72.25 kcal Atomic # 8 Polarization: -31.19 SS G_CDS: -1.53 Total: -32.72 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -76.56 3.04 -73.52 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260664819.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.058 kcal (2) G-P(sol) polarization free energy of solvation -76.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds