Wall clock time and date at job start Mon Mar 30 2020 02:57:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30534 * 1 3 3 Si 1.86805 * 119.99841 * 2 1 4 4 H 1.48497 * 109.47319 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.47165 * 120.00178 * 3 2 1 6 6 H 1.48501 * 109.47099 * 240.00003 * 3 2 1 7 7 C 1.40392 * 120.00323 * 180.27804 * 2 1 3 8 8 H 1.07991 * 120.00550 * 180.02562 * 7 2 1 9 9 C 1.40611 * 119.99708 * 359.97438 * 7 2 1 10 10 N 1.34050 * 121.29623 * 359.97438 * 9 7 2 11 11 C 1.32311 * 121.12372 * 179.97438 * 10 9 7 12 12 N 1.38389 * 118.15997 * 180.02562 * 11 10 9 13 13 N 1.32182 * 123.68442 * 359.97438 * 11 10 9 14 14 C 1.33618 * 121.26958 * 0.02562 * 13 11 10 15 15 C 1.40687 * 122.06666 * 180.02562 * 14 13 11 16 16 F 1.35102 * 120.20507 * 359.95471 * 15 14 13 17 17 C 1.36570 * 119.59006 * 179.97438 * 15 14 13 18 18 C 1.39109 * 121.02347 * 0.02562 * 17 15 14 19 19 C 1.37826 * 120.79287 * 0.02562 * 18 17 15 20 20 C 1.39211 * 119.44466 * 359.67970 * 19 18 17 21 21 H 0.97005 * 119.99946 * 359.72339 * 1 2 3 22 22 H 0.97004 * 119.99672 * 0.02562 * 12 11 10 23 23 H 0.97001 * 119.99689 * 180.02562 * 12 11 10 24 24 H 1.08001 * 119.48671 * 179.97438 * 17 15 14 25 25 H 1.08004 * 119.60536 * 179.97438 * 18 17 15 26 26 H 1.08006 * 120.27953 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3053 0.0000 0.0000 3 14 2.2393 1.6178 0.0000 4 1 1.2743 2.7465 -0.0006 5 1 3.0931 1.6965 1.2125 6 1 3.0931 1.6965 -1.2125 7 6 2.0074 -1.2158 -0.0059 8 1 3.0873 -1.2158 -0.0055 9 6 1.3043 -2.4335 -0.0113 10 7 -0.0358 -2.4638 -0.0104 11 6 -0.6939 -3.6117 -0.0159 12 7 -2.0772 -3.5714 -0.0152 13 7 -0.1044 -4.7947 -0.0232 14 6 1.2271 -4.9061 -0.0248 15 6 1.8721 -6.1564 -0.0330 16 9 1.1460 -7.2957 -0.0386 17 6 3.2367 -6.2113 -0.0349 18 6 4.0010 -5.0490 -0.0283 19 6 3.3994 -3.8090 -0.0191 20 6 2.0100 -3.7224 -0.0233 21 1 -0.4850 0.8401 0.0041 22 1 -2.5376 -2.7175 -0.0110 23 1 -2.5864 -4.3970 -0.0188 24 1 3.7300 -7.1720 -0.0408 25 1 5.0787 -5.1191 -0.0295 26 1 4.0009 -2.9119 -0.0137 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260676409.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:25 Heat of formation + Delta-G solvation = 9.010203 kcal Electronic energy + Delta-G solvation = -15564.483092 eV Core-core repulsion = 12750.012244 eV Total energy + Delta-G solvation = -2814.470848 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.066 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -47.75891 -39.27831 -36.40930 -34.65176 -32.66240 -31.81996 -29.54214 -28.07138 -26.76838 -22.95363 -22.21293 -20.76859 -18.40378 -17.71158 -16.79967 -15.79525 -15.29047 -14.86898 -14.69012 -14.66821 -14.10926 -13.53563 -13.25352 -13.09386 -12.43012 -11.69174 -11.58166 -11.47014 -11.17315 -11.01444 -10.84624 -10.42260 -10.16090 -9.24459 -9.15785 -8.96698 -7.69621 -7.54232 -6.74160 -6.73165 -5.12402 1.70160 2.13902 2.77740 2.86449 2.88398 3.29713 3.61299 4.18678 4.49394 4.58024 5.19311 5.50203 5.74884 5.76581 5.90043 6.06877 6.15443 6.47386 6.64143 6.76110 6.95161 7.09144 7.21528 7.33348 7.62679 7.79003 8.02477 8.18384 8.48236 8.58040 9.06270 9.76881 10.22380 Molecular weight = 233.07amu Principal moments of inertia in cm(-1) A = 0.028902 B = 0.009600 C = 0.007225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.559304 B = 2916.026272 C = 3874.740209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.674 5.674 2 C 0.059 3.941 3 Si 0.920 3.080 4 H -0.273 1.273 5 H -0.259 1.259 6 H -0.259 1.259 7 C -0.367 4.367 8 H 0.100 0.900 9 C 0.300 3.700 10 N -0.593 5.593 11 C 0.587 3.413 12 N -0.839 5.839 13 N -0.678 5.678 14 C 0.208 3.792 15 C 0.040 3.960 16 F -0.147 7.147 17 C -0.116 4.116 18 C -0.192 4.192 19 C -0.046 4.046 20 C -0.212 4.212 21 H 0.284 0.716 22 H 0.404 0.596 23 H 0.396 0.604 24 H 0.118 0.882 25 H 0.115 0.885 26 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.172 0.352 0.003 3.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.293 5.293 2 C -0.172 4.172 3 Si 0.742 3.258 4 H -0.197 1.197 5 H -0.183 1.183 6 H -0.183 1.183 7 C -0.400 4.400 8 H 0.118 0.882 9 C 0.167 3.833 10 N -0.324 5.324 11 C 0.227 3.773 12 N -0.386 5.386 13 N -0.413 5.413 14 C 0.078 3.922 15 C 0.018 3.982 16 F -0.126 7.126 17 C -0.137 4.137 18 C -0.212 4.212 19 C -0.066 4.066 20 C -0.221 4.221 21 H 0.095 0.905 22 H 0.233 0.767 23 H 0.225 0.775 24 H 0.136 0.864 25 H 0.133 0.867 26 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 1.928 0.432 0.000 1.976 hybrid contribution 0.644 0.384 0.002 0.749 sum 2.572 0.816 0.002 2.698 Atomic orbital electron populations 1.70013 1.07743 1.29274 1.22247 1.26318 0.95150 1.01866 0.93888 0.86150 0.80132 0.78969 0.80519 1.19711 1.18293 1.18286 1.19778 0.95151 0.88885 1.36179 0.88211 1.19623 0.87334 0.89770 0.86573 1.68886 1.07824 1.23474 1.32193 1.19396 0.86718 0.85715 0.85425 1.41625 1.02314 1.10456 1.84243 1.67723 1.09285 1.26308 1.37975 1.18248 0.89564 0.91068 0.93343 1.16946 0.88645 0.80399 1.12234 1.91369 1.78316 1.48175 1.94691 1.20492 0.91584 0.99207 1.02377 1.20477 0.98581 0.91622 1.10527 1.20904 0.93390 0.97022 0.95244 1.20276 0.94426 0.95486 1.11919 0.90484 0.76696 0.77535 0.86376 0.86727 0.86026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.67 -15.87 11.55 55.57 0.64 -15.23 15 2 C 0.06 1.31 5.50 -17.29 -0.10 1.22 15 3 Si 0.92 16.03 29.56 -169.99 -5.03 11.01 15 4 H -0.27 -4.65 7.11 56.52 0.40 -4.25 15 5 H -0.26 -4.44 7.11 56.52 0.40 -4.04 15 6 H -0.26 -4.45 7.11 56.52 0.40 -4.05 15 7 C -0.37 -8.70 8.90 -37.88 -0.34 -9.04 15 8 H 0.10 2.10 6.34 -52.49 -0.33 1.76 15 9 C 0.30 7.83 6.75 -82.48 -0.56 7.27 15 10 N -0.59 -15.84 8.07 -10.55 -0.09 -15.93 15 11 C 0.59 14.99 8.59 -323.47 -2.78 12.21 15 12 N -0.84 -17.12 9.07 29.67 0.27 -16.85 15 13 N -0.68 -17.87 10.28 -11.99 -0.12 -17.99 15 14 C 0.21 5.31 6.64 -84.76 -0.56 4.75 15 15 C 0.04 0.92 7.32 -39.26 -0.29 0.64 15 16 F -0.15 -3.37 17.16 2.25 0.04 -3.33 15 17 C -0.12 -2.24 9.92 -39.86 -0.40 -2.64 15 18 C -0.19 -3.53 10.02 -39.41 -0.39 -3.92 15 19 C -0.05 -0.95 9.52 -39.37 -0.37 -1.32 15 20 C -0.21 -5.24 5.91 -104.60 -0.62 -5.86 15 21 H 0.28 5.94 8.29 -40.82 -0.34 5.60 15 22 H 0.40 7.55 8.93 -40.82 -0.36 7.19 15 23 H 0.40 7.10 8.93 -40.82 -0.36 6.74 15 24 H 0.12 1.90 8.06 -52.49 -0.42 1.47 15 25 H 0.11 1.70 8.06 -52.48 -0.42 1.27 15 26 H 0.12 2.23 6.56 -52.48 -0.34 1.88 15 LS Contribution 241.25 15.07 3.64 3.64 Total: -1.00 -29.36 241.25 -8.43 -37.80 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: -1.38 Total: 13.57 kcal Atomic # 6 Polarization: 9.71 SS G_CDS: -6.40 Total: 3.31 kcal Atomic # 7 Polarization: -66.70 SS G_CDS: 0.70 Total: -66.00 kcal Atomic # 9 Polarization: -3.37 SS G_CDS: 0.04 Total: -3.33 kcal Atomic # 14 Polarization: 16.03 SS G_CDS: -5.03 Total: 11.01 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -29.36 -8.43 -37.80 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260676409.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.805 kcal (2) G-P(sol) polarization free energy of solvation -29.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds