Wall clock time and date at job start Mon Mar 30 2020 02:57:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30534 * 1 3 3 Si 1.86805 * 119.99841 * 2 1 4 4 H 1.48497 * 109.47319 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.47165 * 120.00178 * 3 2 1 6 6 H 1.48501 * 109.47099 * 240.00003 * 3 2 1 7 7 C 1.40392 * 120.00323 * 180.27804 * 2 1 3 8 8 H 1.07991 * 120.00550 * 180.02562 * 7 2 1 9 9 C 1.40611 * 119.99708 * 359.97438 * 7 2 1 10 10 N 1.34050 * 121.29623 * 359.97438 * 9 7 2 11 11 C 1.32311 * 121.12372 * 179.97438 * 10 9 7 12 12 N 1.38389 * 118.15997 * 180.02562 * 11 10 9 13 13 N 1.32182 * 123.68442 * 359.97438 * 11 10 9 14 14 C 1.33618 * 121.26958 * 0.02562 * 13 11 10 15 15 C 1.40687 * 122.06666 * 180.02562 * 14 13 11 16 16 F 1.35102 * 120.20507 * 359.95471 * 15 14 13 17 17 C 1.36570 * 119.59006 * 179.97438 * 15 14 13 18 18 C 1.39109 * 121.02347 * 0.02562 * 17 15 14 19 19 C 1.37826 * 120.79287 * 0.02562 * 18 17 15 20 20 C 1.39211 * 119.44466 * 359.67970 * 19 18 17 21 21 H 0.97005 * 119.99946 * 359.72339 * 1 2 3 22 22 H 0.97004 * 119.99672 * 0.02562 * 12 11 10 23 23 H 0.97001 * 119.99689 * 180.02562 * 12 11 10 24 24 H 1.08001 * 119.48671 * 179.97438 * 17 15 14 25 25 H 1.08004 * 119.60536 * 179.97438 * 18 17 15 26 26 H 1.08006 * 120.27953 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3053 0.0000 0.0000 3 14 2.2393 1.6178 0.0000 4 1 1.2743 2.7465 -0.0006 5 1 3.0931 1.6965 1.2125 6 1 3.0931 1.6965 -1.2125 7 6 2.0074 -1.2158 -0.0059 8 1 3.0873 -1.2158 -0.0055 9 6 1.3043 -2.4335 -0.0113 10 7 -0.0358 -2.4638 -0.0104 11 6 -0.6939 -3.6117 -0.0159 12 7 -2.0772 -3.5714 -0.0152 13 7 -0.1044 -4.7947 -0.0232 14 6 1.2271 -4.9061 -0.0248 15 6 1.8721 -6.1564 -0.0330 16 9 1.1460 -7.2957 -0.0386 17 6 3.2367 -6.2113 -0.0349 18 6 4.0010 -5.0490 -0.0283 19 6 3.3994 -3.8090 -0.0191 20 6 2.0100 -3.7224 -0.0233 21 1 -0.4850 0.8401 0.0041 22 1 -2.5376 -2.7175 -0.0110 23 1 -2.5864 -4.3970 -0.0188 24 1 3.7300 -7.1720 -0.0408 25 1 5.0787 -5.1191 -0.0295 26 1 4.0009 -2.9119 -0.0137 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260676409.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:25 Heat of formation + Delta-G solvation = -8.804924 kcal Electronic energy + Delta-G solvation = -15565.255614 eV Core-core repulsion = 12750.012244 eV Total energy + Delta-G solvation = -2815.243370 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.066 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.49684 -41.02475 -38.08703 -36.38306 -34.35070 -33.59233 -31.24504 -29.77048 -28.53458 -24.67919 -23.92986 -22.49047 -20.13633 -19.44483 -18.47006 -17.52574 -16.93330 -16.46733 -16.44819 -16.31698 -15.81739 -15.20130 -15.08814 -14.63351 -14.05720 -13.25598 -13.09445 -13.06628 -12.84355 -12.71776 -12.32618 -11.93901 -11.78155 -11.04600 -10.85896 -10.65827 -9.39735 -9.33654 -8.48143 -8.47251 -6.94156 0.00691 0.45161 1.24982 1.44144 1.59038 1.70566 2.16259 2.51365 2.81667 2.87851 3.52660 3.90260 3.94393 4.16780 4.23892 4.49600 4.56176 4.79429 4.98220 5.13028 5.34712 5.47484 5.56919 5.69757 5.89714 6.16792 6.31534 6.44276 6.78871 6.88255 7.25777 8.13836 8.40685 Molecular weight = 233.07amu Principal moments of inertia in cm(-1) A = 0.028902 B = 0.009600 C = 0.007225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.559304 B = 2916.026272 C = 3874.740209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.710 5.710 2 C 0.015 3.985 3 Si 1.003 2.997 4 H -0.269 1.269 5 H -0.250 1.250 6 H -0.251 1.251 7 C -0.378 4.378 8 H 0.123 0.877 9 C 0.259 3.741 10 N -0.620 5.620 11 C 0.564 3.436 12 N -0.823 5.823 13 N -0.706 5.706 14 C 0.165 3.835 15 C 0.010 3.990 16 F -0.154 7.154 17 C -0.100 4.100 18 C -0.168 4.168 19 C -0.052 4.052 20 C -0.238 4.238 21 H 0.292 0.708 22 H 0.410 0.590 23 H 0.407 0.593 24 H 0.159 0.841 25 H 0.166 0.834 26 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.993 1.115 0.003 6.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.329 5.329 2 C -0.213 4.213 3 Si 0.821 3.179 4 H -0.193 1.193 5 H -0.174 1.174 6 H -0.174 1.174 7 C -0.410 4.410 8 H 0.141 0.859 9 C 0.127 3.873 10 N -0.353 5.353 11 C 0.203 3.797 12 N -0.373 5.373 13 N -0.443 5.443 14 C 0.038 3.962 15 C -0.013 4.013 16 F -0.133 7.133 17 C -0.120 4.120 18 C -0.188 4.188 19 C -0.071 4.071 20 C -0.246 4.246 21 H 0.104 0.896 22 H 0.241 0.759 23 H 0.237 0.763 24 H 0.176 0.824 25 H 0.184 0.816 26 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 4.748 1.154 0.000 4.886 hybrid contribution -0.164 0.106 0.002 0.195 sum 4.584 1.260 0.002 4.754 Atomic orbital electron populations 1.70097 1.09664 1.30890 1.22292 1.27396 0.95884 1.05305 0.92711 0.84927 0.78552 0.73604 0.80854 1.19285 1.17412 1.17436 1.20339 0.96421 0.88982 1.35283 0.85906 1.20235 0.87785 0.91406 0.87869 1.68888 1.08696 1.23948 1.33779 1.19822 0.88135 0.85743 0.85996 1.41496 1.00870 1.11368 1.83518 1.67742 1.10287 1.26605 1.39657 1.18779 0.89810 0.92683 0.94953 1.17328 0.90123 0.79545 1.14255 1.91336 1.78827 1.48213 1.94973 1.20995 0.90006 1.01593 0.99394 1.21053 1.00951 0.90049 1.06765 1.21259 0.91907 0.99233 0.94701 1.20539 0.96268 0.94707 1.13123 0.89633 0.75936 0.76338 0.82353 0.81611 0.83674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -33.86 11.55 21.90 0.25 -33.60 15 2 C 0.01 0.66 5.50 85.41 0.47 1.13 15 3 Si 1.00 31.47 29.56 68.60 2.03 33.50 15 4 H -0.27 -8.16 7.11 99.48 0.71 -7.46 15 5 H -0.25 -7.48 7.11 99.48 0.71 -6.78 15 6 H -0.25 -7.50 7.11 99.48 0.71 -6.80 15 7 C -0.38 -17.79 8.90 23.37 0.21 -17.58 15 8 H 0.12 4.95 6.34 -2.91 -0.02 4.93 15 9 C 0.26 13.82 6.75 41.67 0.28 14.10 15 10 N -0.62 -34.47 8.07 -187.28 -1.51 -35.98 15 11 C 0.56 30.07 8.59 261.72 2.25 32.32 15 12 N -0.82 -35.06 9.07 -60.04 -0.54 -35.61 15 13 N -0.71 -38.81 10.28 -191.86 -1.97 -40.78 15 14 C 0.17 8.66 6.64 40.38 0.27 8.93 15 15 C 0.01 0.46 7.32 22.48 0.16 0.62 15 16 F -0.15 -7.15 17.16 44.97 0.77 -6.38 15 17 C -0.10 -3.54 9.92 22.09 0.22 -3.32 15 18 C -0.17 -5.47 10.02 22.38 0.22 -5.25 15 19 C -0.05 -2.01 9.52 22.41 0.21 -1.80 15 20 C -0.24 -11.84 5.91 -19.85 -0.12 -11.96 15 21 H 0.29 12.32 8.29 -92.70 -0.77 11.55 15 22 H 0.41 16.01 8.93 -92.71 -0.83 15.18 15 23 H 0.41 15.18 8.93 -92.71 -0.83 14.35 15 24 H 0.16 4.31 8.06 -2.91 -0.02 4.29 15 25 H 0.17 3.76 8.06 -2.91 -0.02 3.74 15 26 H 0.15 4.85 6.56 -2.91 -0.02 4.83 15 Total: -1.00 -66.63 241.25 2.82 -63.82 By element: Atomic # 1 Polarization: 38.23 SS G_CDS: -0.39 Total: 37.84 kcal Atomic # 6 Polarization: 13.01 SS G_CDS: 4.18 Total: 17.19 kcal Atomic # 7 Polarization: -142.20 SS G_CDS: -3.78 Total: -145.97 kcal Atomic # 9 Polarization: -7.15 SS G_CDS: 0.77 Total: -6.38 kcal Atomic # 14 Polarization: 31.47 SS G_CDS: 2.03 Total: 33.50 kcal Total: -66.63 2.82 -63.82 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260676409.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.011 kcal (2) G-P(sol) polarization free energy of solvation -66.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds