Wall clock time and date at job start Mon Mar 30 2020 03:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30854 * 1 3 3 Si 1.86810 * 119.99654 * 2 1 4 4 H 1.48495 * 109.46880 * 269.99917 * 3 2 1 5 5 H 1.48493 * 109.46920 * 30.00012 * 3 2 1 6 6 H 1.48504 * 109.46566 * 149.99749 * 3 2 1 7 7 C 1.39885 * 120.00143 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99694 * 180.02562 * 7 2 1 9 9 C 1.41237 * 119.99887 * 359.97438 * 7 2 1 10 10 N 1.34744 * 125.70259 * 0.02562 * 9 7 2 11 11 C 1.30350 * 109.88096 * 179.97438 * 10 9 7 12 12 N 1.35917 * 108.42612 * 0.02562 * 11 10 9 13 13 C 1.39903 * 126.74451 * 180.02562 * 12 11 10 14 14 C 1.38951 * 120.04889 * 359.74152 * 13 12 11 15 15 C 1.38058 * 119.94971 * 179.79017 * 14 13 12 16 16 C 1.38531 * 120.04903 * 0.49363 * 15 14 13 17 17 F 1.35102 * 119.94968 * 179.76543 * 16 15 14 18 18 C 1.38521 * 120.10217 * 359.74019 * 16 15 14 19 19 C 1.38060 * 120.04844 * 0.02562 * 18 16 15 20 20 N 1.32854 * 125.69585 * 180.02562 * 9 7 2 21 21 H 0.97001 * 120.00414 * 0.02562 * 1 2 3 22 22 H 1.07996 * 125.78222 * 180.02562 * 11 10 9 23 23 H 1.08000 * 120.02728 * 0.02562 * 14 13 12 24 24 H 1.07999 * 119.98034 * 180.20849 * 15 14 13 25 25 H 1.07997 * 119.97933 * 180.02562 * 18 16 15 26 26 H 1.08005 * 120.02332 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6179 0.0000 4 1 2.4899 2.0465 -1.4000 5 1 1.4399 2.6527 0.7000 6 1 3.5400 1.4403 0.7001 7 6 2.0080 -1.2114 -0.0005 8 1 3.0880 -1.2113 -0.0001 9 6 1.3018 -2.4346 -0.0005 10 7 -0.0390 -2.5685 -0.0005 11 6 -0.3582 -3.8323 -0.0011 12 7 0.7867 -4.5646 -0.0009 13 6 0.8878 -5.9600 -0.0018 14 6 -0.2616 -6.7408 0.0023 15 6 -0.1596 -8.1176 -0.0030 16 6 1.0875 -8.7208 -0.0021 17 9 1.1850 -10.0683 -0.0025 18 6 2.2348 -7.9444 -0.0013 19 6 2.1375 -6.5672 -0.0009 20 7 1.8486 -3.6454 -0.0005 21 1 -0.4851 0.8400 -0.0004 22 1 -1.3623 -4.2299 -0.0016 23 1 -1.2341 -6.2710 0.0059 24 1 -1.0526 -8.7249 -0.0032 25 1 3.2060 -8.4167 -0.0011 26 1 3.0323 -5.9623 0.0001 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261139148.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:12 Heat of formation + Delta-G solvation = 66.498419 kcal Electronic energy + Delta-G solvation = -14931.364454 eV Core-core repulsion = 12119.386481 eV Total energy + Delta-G solvation = -2811.977972 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.066 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -48.65638 -40.45702 -38.44722 -33.94049 -32.43946 -31.10371 -29.69820 -28.46422 -26.02011 -23.18885 -22.50977 -20.38683 -20.05459 -17.82464 -17.25702 -16.44329 -15.69646 -15.39973 -15.20310 -14.43489 -14.30940 -13.58921 -13.39718 -13.01075 -12.93328 -12.57620 -12.15586 -11.46476 -11.27838 -10.97490 -10.65810 -10.32110 -10.15770 -9.95811 -9.11771 -9.00213 -8.35662 -8.31903 -7.49801 -6.64767 -4.63601 1.18533 1.38580 2.86618 3.08644 3.10937 3.14001 3.50064 3.95022 3.99309 4.29888 4.47962 4.85587 4.95728 5.24558 5.45333 5.45691 5.47236 5.85580 5.97426 6.26401 6.27801 6.41048 6.62546 6.98011 7.05082 7.18852 7.96699 8.07233 8.28446 8.65201 8.79687 9.82304 10.28686 Molecular weight = 233.07amu Principal moments of inertia in cm(-1) A = 0.077224 B = 0.005207 C = 0.004887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 362.494836 B = 5375.654916 C = 5728.307447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.749 5.749 2 C 0.077 3.923 3 Si 0.921 3.079 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.425 4.425 8 H 0.091 0.909 9 C 0.353 3.647 10 N -0.478 5.478 11 C 0.221 3.779 12 N -0.379 5.379 13 C 0.204 3.796 14 C -0.146 4.146 15 C -0.117 4.117 16 C 0.046 3.954 17 F -0.149 7.149 18 C -0.121 4.121 19 C -0.114 4.114 20 N -0.446 5.446 21 H 0.277 0.723 22 H 0.192 0.808 23 H 0.134 0.866 24 H 0.135 0.865 25 H 0.134 0.866 26 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.234 -9.588 -0.001 9.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.374 5.374 2 C -0.147 4.147 3 Si 0.745 3.255 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.185 1.185 7 C -0.466 4.466 8 H 0.109 0.891 9 C 0.099 3.901 10 N -0.201 5.201 11 C -0.075 4.075 12 N -0.164 5.164 13 C 0.103 3.897 14 C -0.169 4.169 15 C -0.137 4.137 16 C 0.025 3.975 17 F -0.127 7.127 18 C -0.141 4.141 19 C -0.135 4.135 20 N -0.281 5.281 21 H 0.088 0.912 22 H 0.209 0.791 23 H 0.152 0.848 24 H 0.153 0.847 25 H 0.152 0.848 26 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -0.943 -9.196 0.005 9.244 hybrid contribution -0.010 0.259 -0.009 0.259 sum -0.953 -8.937 -0.004 8.988 Atomic orbital electron populations 1.70014 1.07105 1.28502 1.31796 1.25949 0.94981 1.01169 0.92612 0.86117 0.80220 0.79985 0.79225 1.19353 1.20129 1.18459 1.18447 0.94221 0.86518 1.47407 0.89080 1.21065 0.86176 0.92173 0.90694 1.71231 1.15663 1.13212 1.19983 1.26352 0.93101 0.88660 0.99411 1.47928 1.06564 1.03192 1.58689 1.17652 0.94187 0.81078 0.96755 1.20570 0.97483 0.92681 1.06133 1.20773 0.96324 0.94454 1.02132 1.17554 0.94526 0.76727 1.08654 1.91445 1.97107 1.29601 1.94593 1.20956 0.97728 0.93463 1.01925 1.20777 0.97405 0.93373 1.01929 1.78904 1.05321 0.97689 1.46227 0.91243 0.79119 0.84830 0.84691 0.84770 0.83838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -19.86 11.89 55.54 0.66 -19.20 15 2 C 0.08 1.98 5.49 -17.35 -0.10 1.88 15 3 Si 0.92 18.74 29.56 -169.99 -5.02 13.71 15 4 H -0.27 -5.37 7.11 56.52 0.40 -4.97 15 5 H -0.28 -5.45 7.11 56.52 0.40 -5.05 15 6 H -0.26 -5.23 7.11 56.52 0.40 -4.83 15 7 C -0.42 -11.72 9.49 -37.83 -0.36 -12.08 15 8 H 0.09 2.41 7.84 -52.49 -0.41 2.00 15 9 C 0.35 9.96 7.60 -157.82 -1.20 8.76 15 10 N -0.48 -12.84 9.34 -13.69 -0.13 -12.96 15 11 C 0.22 4.90 11.98 -89.70 -1.07 3.83 15 12 N -0.38 -8.54 3.84 -11.65 -0.04 -8.59 15 13 C 0.20 3.75 6.70 -83.65 -0.56 3.19 15 14 C -0.15 -2.15 9.47 -39.38 -0.37 -2.52 15 15 C -0.12 -1.54 10.02 -39.54 -0.40 -1.93 15 16 C 0.05 0.65 7.30 -39.37 -0.29 0.36 15 17 F -0.15 -2.06 17.27 2.25 0.04 -2.03 15 18 C -0.12 -1.74 10.02 -39.54 -0.40 -2.13 15 19 C -0.11 -1.95 9.68 -39.38 -0.38 -2.33 15 20 N -0.45 -11.86 12.14 30.83 0.37 -11.49 15 21 H 0.28 6.62 8.30 -40.82 -0.34 6.28 15 22 H 0.19 3.16 7.09 -52.49 -0.37 2.79 15 23 H 0.13 1.66 6.80 -52.49 -0.36 1.30 15 24 H 0.14 1.39 8.06 -52.49 -0.42 0.96 15 25 H 0.13 1.60 8.06 -52.49 -0.42 1.17 15 26 H 0.14 2.62 7.73 -52.48 -0.41 2.21 15 LS Contribution 246.98 15.07 3.72 3.72 Total: -1.00 -30.89 246.98 -7.05 -37.94 By element: Atomic # 1 Polarization: 3.39 SS G_CDS: -1.53 Total: 1.87 kcal Atomic # 6 Polarization: 2.15 SS G_CDS: -5.12 Total: -2.97 kcal Atomic # 7 Polarization: -53.10 SS G_CDS: 0.86 Total: -52.24 kcal Atomic # 9 Polarization: -2.06 SS G_CDS: 0.04 Total: -2.03 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -5.02 Total: 13.71 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -30.89 -7.05 -37.94 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261139148.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.436 kcal (2) G-P(sol) polarization free energy of solvation -30.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds