Wall clock time and date at job start Mon Mar 30 2020 03:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86799 * 120.00298 * 2 1 4 4 H 1.48503 * 109.47052 * 269.99781 * 3 2 1 5 5 H 1.48502 * 109.47078 * 29.99749 * 3 2 1 6 6 H 1.48502 * 109.47520 * 149.99930 * 3 2 1 7 7 C 1.39932 * 119.99782 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99669 * 197.75323 * 7 2 1 9 9 C 1.41401 * 120.00270 * 17.75085 * 7 2 1 10 10 C 1.40793 * 120.20974 * 24.58902 * 9 7 2 11 11 C 1.37648 * 119.89532 * 180.27518 * 10 9 7 12 12 C 1.38515 * 120.32599 * 359.49517 * 11 10 9 13 13 C 1.39297 * 120.42793 * 0.25761 * 12 11 10 14 14 N 1.39767 * 119.95262 * 179.97438 * 13 12 11 15 15 C 1.36687 * 120.00136 * 359.97438 * 14 13 12 16 16 C 1.35043 * 120.00062 * 180.02562 * 15 14 13 17 17 C 1.41197 * 119.99971 * 179.97438 * 16 15 14 18 18 O 1.21712 * 120.00346 * 359.97438 * 17 16 15 19 19 O 1.34976 * 120.00118 * 179.97438 * 17 16 15 20 20 C 1.38327 * 120.08993 * 359.97438 * 13 12 11 21 21 H 0.97002 * 119.99673 * 0.02562 * 1 2 3 22 22 H 1.07996 * 120.04603 * 0.02562 * 10 9 7 23 23 H 1.07997 * 119.83348 * 179.77634 * 11 10 9 24 24 H 1.08003 * 119.78339 * 180.28108 * 12 11 10 25 25 H 0.96998 * 120.00223 * 180.02562 * 14 13 12 26 26 H 1.07994 * 120.00000 * 0.02562 * 15 14 13 27 27 H 1.08004 * 119.99902 * 359.97438 * 16 15 14 28 28 H 0.96693 * 114.00248 * 179.97438 * 19 17 16 29 29 H 1.08006 * 120.15877 * 179.97438 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.4899 2.0463 -1.4001 5 1 1.4398 2.6527 0.7000 6 1 3.5399 1.4401 0.7000 7 6 2.0079 -1.2119 0.0005 8 1 3.0494 -1.2340 0.2858 9 6 1.3514 -2.4075 -0.3723 10 6 0.2208 -2.3632 -1.2102 11 6 -0.4167 -3.5306 -1.5644 12 6 0.0547 -4.7509 -1.1090 13 6 1.1752 -4.8108 -0.2836 14 7 1.6420 -6.0474 0.1706 15 6 0.9989 -7.1969 -0.1948 16 6 1.4496 -8.3917 0.2445 17 6 0.7849 -9.5790 -0.1325 18 8 -0.1946 -9.5257 -0.8530 19 8 1.2358 -10.7733 0.3061 20 6 1.8265 -3.6481 0.0871 21 1 -0.4850 0.8401 -0.0004 22 1 -0.1480 -1.4145 -1.5710 23 1 -1.2860 -3.4953 -2.2043 24 1 -0.4495 -5.6618 -1.3961 25 1 2.4220 -6.0900 0.7457 26 1 0.1303 -7.1496 -0.8347 27 1 2.3186 -8.4390 0.8841 28 1 0.7164 -11.5277 -0.0038 29 1 2.6951 -3.6932 0.7274 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306156163.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:29 Heat of formation + Delta-G solvation = -64.442044 kcal Electronic energy + Delta-G solvation = -14896.101088 eV Core-core repulsion = 12169.612665 eV Total energy + Delta-G solvation = -2726.488423 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.87280 -38.67181 -36.35328 -35.56068 -33.62715 -31.26523 -30.09222 -27.85064 -25.58807 -23.88284 -21.53609 -20.79076 -19.40230 -18.23337 -17.61480 -16.45976 -15.82356 -15.48629 -15.21081 -14.92548 -14.56894 -13.43903 -13.15878 -13.15502 -12.87211 -12.43306 -11.98612 -11.61764 -11.31459 -11.27987 -11.08451 -10.69963 -10.52410 -10.28187 -10.09680 -9.62757 -9.33919 -8.53819 -7.71949 -6.95955 -6.78100 -4.57207 1.43645 2.62283 2.87985 2.98618 3.01471 3.09111 3.36408 3.55977 3.80622 4.08630 4.45891 5.15784 5.49309 5.87034 5.93370 5.99864 6.16962 6.27454 6.70162 6.71953 6.77910 6.83176 6.96505 7.03770 7.37220 7.51624 7.80354 7.85750 7.96923 8.10708 8.30151 8.44149 8.69712 8.74715 10.00809 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.069105 B = 0.004486 C = 0.004262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 405.085753 B = 6239.959449 C = 6568.013558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.076 3.924 3 Si 0.912 3.088 4 H -0.266 1.266 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.459 4.459 8 H 0.080 0.920 9 C 0.132 3.868 10 C -0.175 4.175 11 C -0.078 4.078 12 C -0.278 4.278 13 C 0.158 3.842 14 N -0.631 5.631 15 C 0.260 3.740 16 C -0.390 4.390 17 C 0.533 3.467 18 O -0.562 6.562 19 O -0.519 6.519 20 C -0.256 4.256 21 H 0.283 0.717 22 H 0.121 0.879 23 H 0.096 0.904 24 H 0.097 0.903 25 H 0.406 0.594 26 H 0.161 0.839 27 H 0.125 0.875 28 H 0.399 0.601 29 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.346 -7.042 0.371 7.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.143 4.143 3 Si 0.736 3.264 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.487 4.487 8 H 0.098 0.902 9 C 0.129 3.871 10 C -0.195 4.195 11 C -0.097 4.097 12 C -0.299 4.299 13 C 0.065 3.935 14 N -0.241 5.241 15 C 0.125 3.875 16 C -0.419 4.419 17 C 0.384 3.616 18 O -0.457 6.457 19 O -0.328 6.328 20 C -0.278 4.278 21 H 0.094 0.906 22 H 0.139 0.861 23 H 0.114 0.886 24 H 0.115 0.885 25 H 0.242 0.758 26 H 0.178 0.822 27 H 0.143 0.857 28 H 0.254 0.746 29 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 2.057 -6.353 0.289 6.684 hybrid contribution 0.359 0.189 0.198 0.452 sum 2.417 -6.163 0.487 6.638 Atomic orbital electron populations 1.69821 1.07664 1.29620 1.33897 1.25955 0.94777 1.01564 0.92031 0.86250 0.80456 0.80229 0.79480 1.19104 1.20181 1.18528 1.19601 0.98201 0.91050 1.39892 0.90152 1.17380 0.90698 0.91261 0.87808 1.21387 0.99518 0.97074 1.01516 1.20511 0.98134 0.92442 0.98644 1.20077 1.01618 0.97492 1.10689 1.17646 0.95655 0.82921 0.97282 1.42288 1.29825 1.03995 1.47942 1.21838 0.92465 0.84911 0.88277 1.19686 1.11312 0.89652 1.21226 1.18992 0.81730 0.83895 0.76939 1.90906 1.28267 1.88011 1.38505 1.85070 1.58444 1.17641 1.71679 1.20528 1.05519 0.91223 1.10540 0.90558 0.86108 0.88589 0.88520 0.75801 0.82191 0.85733 0.74622 0.88361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.20 10.96 55.55 0.61 -18.59 15 2 C 0.08 1.79 5.14 -17.34 -0.09 1.71 15 3 Si 0.91 17.60 29.59 -169.99 -5.03 12.57 15 4 H -0.27 -5.09 7.11 56.52 0.40 -4.69 15 5 H -0.28 -5.25 7.11 56.52 0.40 -4.84 15 6 H -0.26 -4.99 7.11 56.52 0.40 -4.59 15 7 C -0.46 -11.39 9.05 -37.74 -0.34 -11.73 15 8 H 0.08 1.91 7.91 -52.48 -0.41 1.50 15 9 C 0.13 3.28 5.57 -106.85 -0.60 2.69 15 10 C -0.18 -4.28 8.69 -38.83 -0.34 -4.62 15 11 C -0.08 -1.73 10.01 -39.69 -0.40 -2.13 15 12 C -0.28 -5.82 9.31 -39.09 -0.36 -6.18 15 13 C 0.16 3.23 6.61 -83.81 -0.55 2.68 15 14 N -0.63 -10.35 5.46 -10.54 -0.06 -10.41 15 15 C 0.26 4.12 9.57 -16.52 -0.16 3.96 15 16 C -0.39 -5.80 9.72 -39.59 -0.38 -6.18 15 17 C 0.53 8.27 8.03 31.86 0.26 8.53 15 18 O -0.56 -10.25 16.83 -19.43 -0.33 -10.57 15 19 O -0.52 -6.50 13.54 -41.25 -0.56 -7.06 15 20 C -0.26 -5.74 9.63 -38.67 -0.37 -6.12 15 21 H 0.28 6.28 8.30 -40.82 -0.34 5.94 15 22 H 0.12 3.04 6.16 -52.49 -0.32 2.72 15 23 H 0.10 1.88 8.06 -52.49 -0.42 1.46 15 24 H 0.10 1.83 5.94 -52.48 -0.31 1.52 15 25 H 0.41 5.67 8.65 -40.82 -0.35 5.32 15 26 H 0.16 2.66 5.28 -52.49 -0.28 2.38 15 27 H 0.12 1.65 8.05 -52.48 -0.42 1.23 15 28 H 0.40 3.20 8.98 45.56 0.41 3.61 15 29 H 0.10 2.03 8.06 -52.48 -0.42 1.61 15 LS Contribution 264.43 15.07 3.98 3.98 Total: -1.00 -27.92 264.43 -6.39 -34.31 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: -1.67 Total: 13.16 kcal Atomic # 6 Polarization: -14.06 SS G_CDS: -3.34 Total: -17.40 kcal Atomic # 7 Polarization: -29.55 SS G_CDS: 0.55 Total: -29.00 kcal Atomic # 8 Polarization: -16.75 SS G_CDS: -0.89 Total: -17.63 kcal Atomic # 14 Polarization: 17.60 SS G_CDS: -5.03 Total: 12.57 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -27.92 -6.39 -34.31 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306156163.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.131 kcal (2) G-P(sol) polarization free energy of solvation -27.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds