Wall clock time and date at job start Mon Mar 30 2020 02:52:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47057 * 2 1 4 4 C 1.50705 * 109.47120 * 119.99676 * 2 1 3 5 5 H 1.07997 * 119.99772 * 114.81066 * 4 2 1 6 6 C 1.37872 * 119.99889 * 294.53370 * 4 2 1 7 7 N 1.31508 * 120.00353 * 0.27674 * 6 4 2 8 8 Si 1.86807 * 119.99729 * 180.27355 * 6 4 2 9 9 H 1.48502 * 109.46817 * 60.00203 * 8 6 4 10 10 H 1.48498 * 109.47194 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.46846 * 300.00434 * 8 6 4 12 12 N 1.46897 * 109.47361 * 240.00236 * 2 1 3 13 13 C 1.50391 * 111.00357 * 84.96826 * 12 2 1 14 14 C 1.46840 * 115.35345 * 181.88354 * 13 12 2 15 15 S 1.83642 * 108.55056 * 95.26861 * 14 13 12 16 16 S 1.96752 * 104.34363 * 280.40448 * 15 14 13 17 17 C 1.83670 * 104.32524 * 59.27544 * 16 15 14 18 18 C 1.46851 * 108.55933 * 280.47762 * 17 16 15 19 19 H 1.08997 * 109.46902 * 66.14079 * 1 2 3 20 20 H 1.09000 * 109.47129 * 186.14106 * 1 2 3 21 21 H 1.09006 * 109.46983 * 306.14256 * 1 2 3 22 22 H 0.97005 * 120.00190 * 179.97438 * 7 6 4 23 23 H 1.08995 * 108.31117 * 303.41170 * 13 12 2 24 24 H 1.09001 * 108.30620 * 60.36489 * 13 12 2 25 25 H 1.08996 * 109.62186 * 335.55284 * 14 13 12 26 26 H 1.09001 * 109.62191 * 214.98915 * 14 13 12 27 27 H 1.08996 * 109.61967 * 160.75789 * 17 16 15 28 28 H 1.08996 * 109.77301 * 40.28937 * 17 16 15 29 29 H 1.08996 * 108.30526 * 333.71415 * 18 17 16 30 30 H 1.09002 * 108.29522 * 216.77742 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.5824 -1.6347 1.1337 6 6 1.7947 -0.1772 2.4796 7 7 1.1250 0.9484 2.5976 8 14 2.4240 -1.0538 4.0044 9 1 3.9034 -1.1639 3.9369 10 1 2.0393 -0.2820 5.2133 11 1 1.8292 -2.4126 4.0751 12 7 2.0197 -0.6924 -1.1994 13 6 2.0833 0.2442 -2.3743 14 6 2.5210 -0.3615 -3.6383 15 16 1.0334 -0.8380 -4.6039 16 16 0.4495 -2.5336 -3.7945 17 6 0.1219 -2.1096 -2.0377 18 6 1.4033 -2.0589 -1.3223 19 1 -0.3633 0.4157 -0.9398 20 1 -0.3633 -1.0218 0.1099 21 1 -0.3633 0.6062 0.8299 22 1 0.9574 1.3233 3.4764 23 1 1.0924 0.6724 -2.5250 24 1 2.7682 1.0558 -2.1285 25 1 3.1220 -1.2469 -3.4312 26 1 3.1099 0.3596 -4.2052 27 1 -0.5172 -2.8709 -1.5905 28 1 -0.3692 -1.1383 -1.9782 29 1 2.1100 -2.7078 -1.8395 30 1 1.2511 -2.4572 -0.3191 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306957695.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:29 Heat of formation + Delta-G solvation = 19.040161 kcal Electronic energy + Delta-G solvation = -13234.075874 eV Core-core repulsion = 11089.404334 eV Total energy + Delta-G solvation = -2144.671540 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 233.060 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -37.58207 -33.30124 -32.13254 -30.44199 -27.32475 -25.29877 -23.30429 -21.18453 -19.83617 -18.77527 -16.39875 -16.21116 -15.29305 -14.80977 -14.61734 -14.21671 -13.54367 -13.26611 -12.60725 -12.28445 -12.08345 -11.65340 -11.14339 -11.06096 -11.01008 -10.85633 -10.81436 -10.67468 -10.25265 -10.12313 -9.62173 -9.04300 -8.48623 -8.42558 -7.53455 -7.13677 -6.08039 -4.11163 -0.44531 1.67391 2.40357 3.28445 3.33540 3.35930 4.21112 4.46610 5.06584 5.25390 5.26512 5.40247 5.47295 5.60602 5.77213 6.09653 6.23511 6.25233 6.55974 6.60672 6.70075 7.00170 7.28336 7.51157 7.76411 8.05517 8.20434 8.47505 8.94591 9.54094 11.00112 Molecular weight = 233.06amu Principal moments of inertia in cm(-1) A = 0.047909 B = 0.007552 C = 0.007241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.295584 B = 3706.634580 C = 3865.842341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.224 3.776 3 H 0.041 0.959 4 C -0.501 4.501 5 H 0.062 0.938 6 C 0.060 3.940 7 N -0.894 5.894 8 Si 0.896 3.104 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.278 1.278 12 N -0.573 5.573 13 C 0.065 3.935 14 C -0.079 4.079 15 S -0.182 6.182 16 S -0.181 6.181 17 C -0.108 4.108 18 C 0.073 3.927 19 H 0.007 0.993 20 H 0.034 0.966 21 H 0.076 0.924 22 H 0.261 0.739 23 H 0.040 0.960 24 H 0.085 0.915 25 H 0.103 0.897 26 H 0.116 0.884 27 H 0.113 0.887 28 H 0.104 0.896 29 H 0.065 0.935 30 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.127 -3.220 -9.408 9.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.118 3.882 3 H 0.059 0.941 4 C -0.540 4.540 5 H 0.080 0.920 6 C -0.142 4.142 7 N -0.533 5.533 8 Si 0.724 3.276 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.204 1.204 12 N -0.300 5.300 13 C -0.063 4.063 14 C -0.232 4.232 15 S -0.063 6.063 16 S -0.063 6.063 17 C -0.262 4.262 18 C -0.056 4.056 19 H 0.025 0.975 20 H 0.053 0.947 21 H 0.095 0.905 22 H 0.071 0.929 23 H 0.058 0.942 24 H 0.103 0.897 25 H 0.121 0.879 26 H 0.134 0.866 27 H 0.131 0.869 28 H 0.122 0.878 29 H 0.083 0.917 30 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -0.390 -3.647 -10.648 11.262 hybrid contribution 0.024 0.284 2.209 2.227 sum -0.366 -3.364 -8.439 9.092 Atomic orbital electron populations 1.22505 1.01048 1.00020 0.98809 1.19189 0.89397 0.94410 0.85188 0.94133 1.21081 1.34696 1.08583 0.89647 0.91957 1.24934 0.95262 0.95007 0.98998 1.69905 1.40420 1.19143 1.23849 0.86594 0.79367 0.79494 0.82130 1.20230 1.21417 1.20358 1.61100 1.61885 1.03043 1.03954 1.21470 1.00619 0.95422 0.88824 1.23339 0.96252 1.05604 0.98048 1.88629 1.36611 1.33014 1.48089 1.88584 1.82868 1.16303 1.18512 1.24374 1.04167 1.06466 0.91216 1.21584 0.90981 0.91261 1.01772 0.97452 0.94692 0.90486 0.92883 0.94176 0.89683 0.87889 0.86635 0.86920 0.87760 0.91657 0.88008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.67 7.42 37.16 0.28 -3.40 16 2 C 0.22 5.23 2.17 -68.86 -0.15 5.08 16 3 H 0.04 1.06 7.82 -51.93 -0.41 0.65 16 4 C -0.50 -12.92 7.67 -34.44 -0.26 -13.19 16 5 H 0.06 1.61 7.30 -52.49 -0.38 1.23 16 6 C 0.06 1.57 5.33 -17.82 -0.10 1.48 16 7 N -0.89 -24.62 11.78 55.43 0.65 -23.97 16 8 Si 0.90 20.66 29.54 -169.99 -5.02 15.64 16 9 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 10 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 12 N -0.57 -11.25 4.23 -229.05 -0.97 -12.22 16 13 C 0.06 1.09 4.79 -4.81 -0.02 1.06 16 14 C -0.08 -1.11 6.02 34.21 0.21 -0.91 16 15 S -0.18 -2.77 21.51 -89.27 -1.92 -4.69 16 16 S -0.18 -2.83 21.51 -89.27 -1.92 -4.75 16 17 C -0.11 -1.73 4.89 34.21 0.17 -1.56 16 18 C 0.07 1.29 4.39 -4.79 -0.02 1.27 16 19 H 0.01 0.14 6.20 -51.93 -0.32 -0.18 16 20 H 0.03 0.74 6.27 -51.93 -0.33 0.42 16 21 H 0.08 1.93 6.66 -51.93 -0.35 1.58 16 22 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 23 H 0.04 0.71 6.62 -51.93 -0.34 0.37 16 24 H 0.09 1.40 8.06 -51.93 -0.42 0.98 16 25 H 0.10 1.50 7.95 -51.93 -0.41 1.09 16 26 H 0.12 1.34 8.14 -51.93 -0.42 0.91 16 27 H 0.11 1.63 8.14 -51.93 -0.42 1.20 16 28 H 0.10 1.82 5.38 -51.93 -0.28 1.54 16 29 H 0.07 1.12 7.46 -51.93 -0.39 0.73 16 30 H 0.10 1.97 6.26 -51.93 -0.33 1.65 16 LS Contribution 253.14 15.07 3.81 3.81 Total: -1.00 -26.52 253.14 -9.20 -35.72 By element: Atomic # 1 Polarization: 4.55 SS G_CDS: -3.93 Total: 0.62 kcal Atomic # 6 Polarization: -10.26 SS G_CDS: 0.10 Total: -10.16 kcal Atomic # 7 Polarization: -35.87 SS G_CDS: -0.32 Total: -36.19 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Atomic # 16 Polarization: -5.60 SS G_CDS: -3.84 Total: -9.44 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -26.52 -9.20 -35.72 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306957695.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.757 kcal (2) G-P(sol) polarization free energy of solvation -26.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds