Wall clock time and date at job start Mon Mar 30 2020 02:52:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47057 * 2 1 4 4 C 1.50705 * 109.47120 * 119.99676 * 2 1 3 5 5 H 1.07997 * 119.99772 * 114.81066 * 4 2 1 6 6 C 1.37872 * 119.99889 * 294.53370 * 4 2 1 7 7 N 1.31508 * 120.00353 * 0.27674 * 6 4 2 8 8 Si 1.86807 * 119.99729 * 180.27355 * 6 4 2 9 9 H 1.48502 * 109.46817 * 60.00203 * 8 6 4 10 10 H 1.48498 * 109.47194 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.46846 * 300.00434 * 8 6 4 12 12 N 1.46897 * 109.47361 * 240.00236 * 2 1 3 13 13 C 1.50391 * 111.00357 * 84.96826 * 12 2 1 14 14 C 1.46840 * 115.35345 * 181.88354 * 13 12 2 15 15 S 1.83642 * 108.55056 * 95.26861 * 14 13 12 16 16 S 1.96752 * 104.34363 * 280.40448 * 15 14 13 17 17 C 1.83670 * 104.32524 * 59.27544 * 16 15 14 18 18 C 1.46851 * 108.55933 * 280.47762 * 17 16 15 19 19 H 1.08997 * 109.46902 * 66.14079 * 1 2 3 20 20 H 1.09000 * 109.47129 * 186.14106 * 1 2 3 21 21 H 1.09006 * 109.46983 * 306.14256 * 1 2 3 22 22 H 0.97005 * 120.00190 * 179.97438 * 7 6 4 23 23 H 1.08995 * 108.31117 * 303.41170 * 13 12 2 24 24 H 1.09001 * 108.30620 * 60.36489 * 13 12 2 25 25 H 1.08996 * 109.62186 * 335.55284 * 14 13 12 26 26 H 1.09001 * 109.62191 * 214.98915 * 14 13 12 27 27 H 1.08996 * 109.61967 * 160.75789 * 17 16 15 28 28 H 1.08996 * 109.77301 * 40.28937 * 17 16 15 29 29 H 1.08996 * 108.30526 * 333.71415 * 18 17 16 30 30 H 1.09002 * 108.29522 * 216.77742 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.5824 -1.6347 1.1337 6 6 1.7947 -0.1772 2.4796 7 7 1.1250 0.9484 2.5976 8 14 2.4240 -1.0538 4.0044 9 1 3.9034 -1.1639 3.9369 10 1 2.0393 -0.2820 5.2133 11 1 1.8292 -2.4126 4.0751 12 7 2.0197 -0.6924 -1.1994 13 6 2.0833 0.2442 -2.3743 14 6 2.5210 -0.3615 -3.6383 15 16 1.0334 -0.8380 -4.6039 16 16 0.4495 -2.5336 -3.7945 17 6 0.1219 -2.1096 -2.0377 18 6 1.4033 -2.0589 -1.3223 19 1 -0.3633 0.4157 -0.9398 20 1 -0.3633 -1.0218 0.1099 21 1 -0.3633 0.6062 0.8299 22 1 0.9574 1.3233 3.4764 23 1 1.0924 0.6724 -2.5250 24 1 2.7682 1.0558 -2.1285 25 1 3.1220 -1.2469 -3.4312 26 1 3.1099 0.3596 -4.2052 27 1 -0.5172 -2.8709 -1.5905 28 1 -0.3692 -1.1383 -1.9782 29 1 2.1100 -2.7078 -1.8395 30 1 1.2511 -2.4572 -0.3191 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306957695.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:29 Heat of formation + Delta-G solvation = 4.520014 kcal Electronic energy + Delta-G solvation = -13234.705515 eV Core-core repulsion = 11089.404334 eV Total energy + Delta-G solvation = -2145.301181 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 233.060 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.15434 -35.11369 -33.52189 -32.15134 -28.93268 -27.25338 -24.68875 -22.81123 -21.29905 -20.15023 -18.27855 -17.65193 -16.80941 -16.33205 -16.17435 -15.62725 -15.05559 -14.68759 -14.18566 -13.89564 -13.66306 -13.20071 -12.81248 -12.78771 -12.58688 -12.54853 -12.35271 -12.15741 -11.97058 -11.71385 -11.18806 -10.94512 -10.45673 -9.72188 -8.83302 -8.65050 -8.08784 -6.18138 -1.66367 0.44615 1.17362 1.45598 1.46511 1.53592 2.43130 2.85796 3.22571 3.76800 4.05605 4.15179 4.19442 4.29627 4.38639 4.69209 4.80112 4.84553 4.87132 4.94394 5.08491 5.22628 5.47479 5.67909 5.76930 6.22935 6.44406 6.70349 6.94781 7.50953 8.97733 Molecular weight = 233.06amu Principal moments of inertia in cm(-1) A = 0.047909 B = 0.007552 C = 0.007241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.295584 B = 3706.634580 C = 3865.842341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.231 3.769 3 H 0.008 0.992 4 C -0.509 4.509 5 H 0.059 0.941 6 C 0.013 3.987 7 N -0.923 5.923 8 Si 0.954 3.046 9 H -0.274 1.274 10 H -0.289 1.289 11 H -0.271 1.271 12 N -0.583 5.583 13 C 0.069 3.931 14 C -0.068 4.068 15 S -0.187 6.187 16 S -0.174 6.174 17 C -0.104 4.104 18 C 0.080 3.920 19 H 0.020 0.980 20 H 0.041 0.959 21 H 0.046 0.954 22 H 0.260 0.740 23 H 0.031 0.969 24 H 0.086 0.914 25 H 0.104 0.896 26 H 0.148 0.852 27 H 0.130 0.870 28 H 0.090 0.910 29 H 0.075 0.925 30 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.305 -4.126 -10.246 11.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.124 3.876 3 H 0.026 0.974 4 C -0.548 4.548 5 H 0.077 0.923 6 C -0.186 4.186 7 N -0.563 5.563 8 Si 0.780 3.220 9 H -0.200 1.200 10 H -0.215 1.215 11 H -0.196 1.196 12 N -0.310 5.310 13 C -0.059 4.059 14 C -0.221 4.221 15 S -0.068 6.068 16 S -0.055 6.055 17 C -0.259 4.259 18 C -0.048 4.048 19 H 0.039 0.961 20 H 0.060 0.940 21 H 0.065 0.935 22 H 0.069 0.931 23 H 0.049 0.951 24 H 0.105 0.895 25 H 0.122 0.878 26 H 0.166 0.834 27 H 0.148 0.852 28 H 0.109 0.891 29 H 0.093 0.907 30 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 0.046 -4.567 -11.509 12.382 hybrid contribution -0.090 0.580 2.391 2.462 sum -0.044 -3.987 -9.119 9.952 Atomic orbital electron populations 1.22287 1.00389 0.99808 0.98204 1.18892 0.89701 0.92693 0.86330 0.97417 1.21375 1.34213 1.08434 0.90766 0.92270 1.25646 0.95602 0.95655 1.01707 1.70032 1.41628 1.20416 1.24195 0.85671 0.78781 0.78635 0.78864 1.19979 1.21494 1.19606 1.60958 1.62172 1.03764 1.04100 1.21500 1.00319 0.95065 0.88989 1.23311 0.95786 1.06247 0.96764 1.88680 1.37293 1.33035 1.47807 1.88586 1.83192 1.16250 1.17485 1.24213 1.03247 1.06365 0.92037 1.21502 0.92072 0.90068 1.01175 0.96079 0.94019 0.93495 0.93111 0.95112 0.89540 0.87779 0.83387 0.85216 0.89128 0.90656 0.89806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.61 7.42 71.98 0.53 -6.08 16 2 C 0.23 10.85 2.17 44.17 0.10 10.94 16 3 H 0.01 0.42 7.82 -2.39 -0.02 0.40 16 4 C -0.51 -26.31 7.67 25.60 0.20 -26.11 16 5 H 0.06 3.04 7.30 -2.91 -0.02 3.02 16 6 C 0.01 0.66 5.33 84.65 0.45 1.11 16 7 N -0.92 -51.55 11.78 21.44 0.25 -51.30 16 8 Si 0.95 42.29 29.54 68.60 2.03 44.32 16 9 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 10 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 11 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 12 N -0.58 -22.42 4.23 -878.57 -3.72 -26.14 16 13 C 0.07 2.21 4.79 83.71 0.40 2.62 16 14 C -0.07 -1.74 6.02 70.07 0.42 -1.32 16 15 S -0.19 -5.26 21.51 -19.19 -0.41 -5.67 16 16 S -0.17 -5.04 21.51 -19.19 -0.41 -5.45 16 17 C -0.10 -3.15 4.89 70.08 0.34 -2.81 16 18 C 0.08 2.74 4.39 83.71 0.37 3.10 16 19 H 0.02 0.85 6.20 -2.39 -0.01 0.83 16 20 H 0.04 1.76 6.27 -2.39 -0.01 1.75 16 21 H 0.05 2.38 6.66 -2.38 -0.02 2.36 16 22 H 0.26 13.99 8.31 -92.70 -0.77 13.22 16 23 H 0.03 1.06 6.62 -2.39 -0.02 1.04 16 24 H 0.09 2.75 8.06 -2.39 -0.02 2.73 16 25 H 0.10 2.74 7.95 -2.39 -0.02 2.72 16 26 H 0.15 2.90 8.14 -2.39 -0.02 2.88 16 27 H 0.13 3.49 8.14 -2.39 -0.02 3.47 16 28 H 0.09 3.03 5.38 -2.39 -0.01 3.02 16 29 H 0.08 2.43 7.46 -2.39 -0.02 2.41 16 30 H 0.08 3.18 6.26 -2.39 -0.01 3.17 16 Total: -1.00 -55.67 253.14 1.67 -54.00 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: 1.13 Total: 8.79 kcal Atomic # 6 Polarization: -21.35 SS G_CDS: 2.81 Total: -18.54 kcal Atomic # 7 Polarization: -73.98 SS G_CDS: -3.47 Total: -77.44 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.32 kcal Atomic # 16 Polarization: -10.29 SS G_CDS: -0.83 Total: -11.12 kcal Total: -55.67 1.67 -54.00 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306957695.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.519 kcal (2) G-P(sol) polarization free energy of solvation -55.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds