Wall clock time and date at job start Mon Mar 30 2020 02:56:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31540 * 1 3 3 Si 1.86805 * 119.99520 * 2 1 4 4 H 1.48506 * 109.46648 * 239.99560 * 3 2 1 5 5 H 1.48493 * 109.47412 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47353 * 120.00332 * 3 2 1 7 7 C 1.38667 * 120.00322 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00207 * 180.02562 * 7 2 1 9 9 O 1.34805 * 119.99924 * 359.97438 * 7 2 1 10 10 C 1.35635 * 117.00122 * 185.07351 * 9 7 2 11 11 C 1.39100 * 120.00095 * 174.47236 * 10 9 7 12 12 C 1.37513 * 120.06387 * 179.73042 * 11 10 9 13 13 C 1.40297 * 120.18946 * 0.29527 * 12 11 10 14 14 C 1.39370 * 119.49577 * 359.97438 * 13 12 11 15 15 C 1.38071 * 119.98362 * 359.97438 * 14 13 12 16 16 C 1.50998 * 109.63737 * 179.97438 * 14 13 12 17 17 C 1.53476 * 106.36975 * 359.97438 * 16 14 13 18 18 C 1.47599 * 129.90927 * 179.97438 * 13 12 11 19 19 N 1.29422 * 125.97269 * 0.02562 * 18 13 12 20 20 O 1.41595 * 120.00145 * 0.02633 * 19 18 13 21 21 H 0.97003 * 120.00595 * 359.97438 * 1 2 3 22 22 H 1.08000 * 119.96396 * 0.02562 * 11 10 9 23 23 H 1.08001 * 119.90096 * 180.28242 * 12 11 10 24 24 H 1.08003 * 119.86189 * 180.02562 * 15 14 13 25 25 H 1.08999 * 110.08285 * 119.22182 * 16 14 13 26 26 H 1.09004 * 110.07789 * 240.77577 * 16 14 13 27 27 H 1.09004 * 110.26396 * 118.97314 * 17 16 14 28 28 H 1.08997 * 110.27357 * 240.93909 * 17 16 14 29 29 H 0.96694 * 114.00561 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3154 0.0000 0.0000 3 14 2.2493 1.6179 0.0000 4 1 3.1031 1.6964 -1.2125 5 1 1.2843 2.7465 -0.0006 6 1 3.1031 1.6966 1.2124 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2008 0.0010 9 8 1.3348 -2.3683 0.0016 10 6 2.0695 -3.5034 0.1089 11 6 1.4337 -4.7344 0.2322 12 6 2.1772 -5.8866 0.3356 13 6 3.5788 -5.8252 0.3234 14 6 4.2105 -4.5885 0.2052 15 6 3.4572 -3.4361 0.1008 16 6 5.7081 -4.7805 0.2168 17 6 5.9497 -6.2896 0.3573 18 6 4.5750 -6.9099 0.4198 19 7 4.3154 -8.1723 0.5381 20 8 2.9720 -8.6175 0.5847 21 1 -0.4851 0.8400 0.0004 22 1 0.3549 -4.7857 0.2420 23 1 1.6808 -6.8414 0.4266 24 1 3.9488 -2.4788 0.0090 25 1 6.1392 -4.4176 -0.7162 26 1 6.1467 -4.2514 1.0629 27 1 6.4944 -6.6670 -0.5081 28 1 6.5034 -6.4999 1.2723 29 1 2.8780 -9.5757 0.6737 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308772507.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:15 Heat of formation + Delta-G solvation = -0.302259 kcal Electronic energy + Delta-G solvation = -15462.948685 eV Core-core repulsion = 12739.241572 eV Total energy + Delta-G solvation = -2723.707113 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.66928 -37.92758 -35.99907 -34.47277 -32.33077 -31.75680 -29.09563 -28.17524 -25.46869 -24.48067 -22.00740 -20.49378 -19.20689 -18.11867 -17.20051 -16.48479 -15.27907 -15.21873 -14.85838 -14.53455 -13.69149 -13.60115 -13.08608 -13.02193 -12.73657 -12.27476 -11.86097 -11.71991 -11.70037 -11.45991 -11.26905 -10.94263 -10.70314 -10.51959 -9.63707 -9.46407 -9.31678 -8.83435 -8.12575 -7.18084 -6.58602 -4.15712 1.49904 2.15091 2.92285 3.06497 3.10622 3.12013 3.26412 3.86432 4.46970 4.69851 4.96334 5.01180 5.14640 5.30192 5.32162 5.70933 5.75611 5.90722 6.05326 6.08277 6.10378 6.23449 6.61548 6.77479 6.89137 7.10126 7.14401 7.28439 7.35621 7.69757 7.86283 8.05714 8.86055 9.53493 10.58321 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.043429 B = 0.006209 C = 0.005458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.578617 B = 4508.312267 C = 5128.482099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C 0.042 3.958 3 Si 0.944 3.056 4 H -0.268 1.268 5 H -0.277 1.277 6 H -0.268 1.268 7 C -0.395 4.395 8 H 0.096 0.904 9 O -0.164 6.164 10 C 0.174 3.826 11 C -0.202 4.202 12 C -0.019 4.019 13 C -0.227 4.227 14 C -0.018 4.018 15 C -0.233 4.233 16 C -0.082 4.082 17 C -0.061 4.061 18 C 0.196 3.804 19 N -0.366 5.366 20 O -0.412 6.412 21 H 0.274 0.726 22 H 0.122 0.878 23 H 0.123 0.877 24 H 0.131 0.869 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.092 0.908 28 H 0.093 0.907 29 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.338 -7.861 0.570 12.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C -0.164 4.164 3 Si 0.768 3.232 4 H -0.193 1.193 5 H -0.201 1.201 6 H -0.193 1.193 7 C -0.470 4.470 8 H 0.113 0.887 9 O -0.066 6.066 10 C 0.118 3.882 11 C -0.222 4.222 12 C -0.039 4.039 13 C -0.230 4.230 14 C -0.020 4.020 15 C -0.253 4.253 16 C -0.119 4.119 17 C -0.099 4.099 18 C 0.010 3.990 19 N -0.113 5.113 20 O -0.316 6.316 21 H 0.083 0.917 22 H 0.140 0.860 23 H 0.141 0.859 24 H 0.148 0.852 25 H 0.104 0.896 26 H 0.104 0.896 27 H 0.111 0.889 28 H 0.111 0.889 29 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 9.130 -7.925 0.572 12.103 hybrid contribution -0.197 0.808 -0.004 0.832 sum 8.932 -7.117 0.568 11.435 Atomic orbital electron populations 1.70020 1.06093 1.28213 1.44538 1.25361 0.95880 0.99050 0.96122 0.85734 0.78750 0.79374 0.79355 1.19310 1.20146 1.19301 1.21384 0.92028 0.80628 1.52996 0.88682 1.83952 1.34588 1.11651 1.76361 1.19378 0.90009 0.87925 0.90901 1.20119 0.99764 0.90033 1.12235 1.20719 0.91862 0.97248 0.94032 1.19394 0.93085 0.93085 1.17473 1.20143 0.94376 0.92887 0.94642 1.20468 0.93151 0.98005 1.13664 1.20833 0.93164 0.94739 1.03162 1.20739 0.91313 0.94219 1.03648 1.23688 0.96064 0.88939 0.90279 1.76337 0.99141 1.14630 1.21162 1.88476 1.19249 1.28424 1.95461 0.91654 0.85993 0.85941 0.85179 0.89629 0.89623 0.88944 0.88912 0.76343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.39 13.67 55.48 0.76 -23.64 15 2 C 0.04 1.11 5.49 -17.52 -0.10 1.01 15 3 Si 0.94 19.75 29.55 -169.99 -5.02 14.73 15 4 H -0.27 -5.42 7.11 56.52 0.40 -5.01 15 5 H -0.28 -5.67 7.11 56.52 0.40 -5.27 15 6 H -0.27 -5.42 7.11 56.52 0.40 -5.02 15 7 C -0.39 -10.68 9.48 30.89 0.29 -10.39 15 8 H 0.10 2.35 5.19 -52.49 -0.27 2.08 15 9 O -0.16 -4.60 9.75 0.47 0.00 -4.59 15 10 C 0.17 4.20 6.65 -39.00 -0.26 3.94 15 11 C -0.20 -4.43 9.97 -39.53 -0.39 -4.82 15 12 C -0.02 -0.38 9.56 -39.07 -0.37 -0.75 15 13 C -0.23 -4.38 6.05 -104.88 -0.63 -5.01 15 14 C -0.02 -0.34 6.19 -104.12 -0.64 -0.98 15 15 C -0.23 -5.00 9.15 -39.38 -0.36 -5.37 15 16 C -0.08 -1.09 6.79 -27.49 -0.19 -1.28 15 17 C -0.06 -0.76 6.86 -27.52 -0.19 -0.95 15 18 C 0.20 3.30 7.49 -79.67 -0.60 2.70 15 19 N -0.37 -6.13 12.20 35.15 0.43 -5.70 15 20 O -0.41 -6.45 12.52 -11.47 -0.14 -6.60 15 21 H 0.27 7.14 8.31 -40.82 -0.34 6.80 15 22 H 0.12 2.55 8.06 -52.49 -0.42 2.12 15 23 H 0.12 2.31 6.30 -52.49 -0.33 1.98 15 24 H 0.13 2.71 5.61 -52.48 -0.29 2.42 15 25 H 0.09 1.00 8.14 -51.93 -0.42 0.58 15 26 H 0.09 1.00 8.14 -51.93 -0.42 0.58 15 27 H 0.09 0.96 8.14 -51.93 -0.42 0.54 15 28 H 0.09 0.97 8.14 -51.93 -0.42 0.55 15 29 H 0.39 3.99 9.28 45.56 0.42 4.42 15 LS Contribution 258.04 15.07 3.89 3.89 Total: -1.00 -31.79 258.04 -5.25 -37.04 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -1.72 Total: 6.76 kcal Atomic # 6 Polarization: -18.45 SS G_CDS: -3.44 Total: -21.89 kcal Atomic # 7 Polarization: -30.53 SS G_CDS: 1.19 Total: -29.34 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: -0.14 Total: -11.19 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.02 Total: 14.73 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -31.79 -5.25 -37.04 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308772507.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.740 kcal (2) G-P(sol) polarization free energy of solvation -31.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds