Wall clock time and date at job start Mon Mar 30 2020 02:56:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31540 * 1 3 3 Si 1.86805 * 119.99520 * 2 1 4 4 H 1.48506 * 109.46648 * 239.99560 * 3 2 1 5 5 H 1.48493 * 109.47412 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47353 * 120.00332 * 3 2 1 7 7 C 1.38667 * 120.00322 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00207 * 180.02562 * 7 2 1 9 9 O 1.34805 * 119.99924 * 359.97438 * 7 2 1 10 10 C 1.35635 * 117.00122 * 185.07351 * 9 7 2 11 11 C 1.39100 * 120.00095 * 174.47236 * 10 9 7 12 12 C 1.37513 * 120.06387 * 179.73042 * 11 10 9 13 13 C 1.40297 * 120.18946 * 0.29527 * 12 11 10 14 14 C 1.39370 * 119.49577 * 359.97438 * 13 12 11 15 15 C 1.38071 * 119.98362 * 359.97438 * 14 13 12 16 16 C 1.50998 * 109.63737 * 179.97438 * 14 13 12 17 17 C 1.53476 * 106.36975 * 359.97438 * 16 14 13 18 18 C 1.47599 * 129.90927 * 179.97438 * 13 12 11 19 19 N 1.29422 * 125.97269 * 0.02562 * 18 13 12 20 20 O 1.41595 * 120.00145 * 0.02633 * 19 18 13 21 21 H 0.97003 * 120.00595 * 359.97438 * 1 2 3 22 22 H 1.08000 * 119.96396 * 0.02562 * 11 10 9 23 23 H 1.08001 * 119.90096 * 180.28242 * 12 11 10 24 24 H 1.08003 * 119.86189 * 180.02562 * 15 14 13 25 25 H 1.08999 * 110.08285 * 119.22182 * 16 14 13 26 26 H 1.09004 * 110.07789 * 240.77577 * 16 14 13 27 27 H 1.09004 * 110.26396 * 118.97314 * 17 16 14 28 28 H 1.08997 * 110.27357 * 240.93909 * 17 16 14 29 29 H 0.96694 * 114.00561 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3154 0.0000 0.0000 3 14 2.2493 1.6179 0.0000 4 1 3.1031 1.6964 -1.2125 5 1 1.2843 2.7465 -0.0006 6 1 3.1031 1.6966 1.2124 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2008 0.0010 9 8 1.3348 -2.3683 0.0016 10 6 2.0695 -3.5034 0.1089 11 6 1.4337 -4.7344 0.2322 12 6 2.1772 -5.8866 0.3356 13 6 3.5788 -5.8252 0.3234 14 6 4.2105 -4.5885 0.2052 15 6 3.4572 -3.4361 0.1008 16 6 5.7081 -4.7805 0.2168 17 6 5.9497 -6.2896 0.3573 18 6 4.5750 -6.9099 0.4198 19 7 4.3154 -8.1723 0.5381 20 8 2.9720 -8.6175 0.5847 21 1 -0.4851 0.8400 0.0004 22 1 0.3549 -4.7857 0.2420 23 1 1.6808 -6.8414 0.4266 24 1 3.9488 -2.4788 0.0090 25 1 6.1392 -4.4176 -0.7162 26 1 6.1467 -4.2514 1.0629 27 1 6.4944 -6.6670 -0.5081 28 1 6.5034 -6.4999 1.2723 29 1 2.8780 -9.5757 0.6737 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308772507.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:15 Heat of formation + Delta-G solvation = -22.787794 kcal Electronic energy + Delta-G solvation = -15463.923731 eV Core-core repulsion = 12739.241572 eV Total energy + Delta-G solvation = -2724.682159 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.25906 -39.56954 -37.35260 -35.94086 -34.23821 -33.12433 -30.61504 -29.72778 -27.36278 -25.73021 -23.65125 -22.04000 -20.55096 -19.92983 -18.68593 -18.16500 -16.80986 -16.37071 -16.30976 -16.22080 -15.52608 -15.22415 -14.65596 -14.37074 -14.29161 -13.72183 -13.42837 -13.15219 -13.08489 -12.76595 -12.62248 -12.36654 -12.31549 -12.15082 -11.33052 -10.99088 -10.79237 -10.52943 -9.70698 -8.87768 -8.51936 -6.20170 -0.00852 0.49960 1.36544 1.40235 1.53302 1.56718 2.10013 2.16051 2.78917 3.09814 3.31083 3.47348 3.77806 4.08025 4.19862 4.38892 4.41178 4.51067 4.60335 4.83795 5.01377 5.02543 5.06914 5.17329 5.25969 5.49312 5.52688 5.58606 5.95397 6.02413 6.09596 6.88447 6.91681 7.67276 8.70227 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.043429 B = 0.006209 C = 0.005458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.578617 B = 4508.312267 C = 5128.482099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.019 4.019 3 Si 1.022 2.978 4 H -0.254 1.254 5 H -0.273 1.273 6 H -0.254 1.254 7 C -0.419 4.419 8 H 0.110 0.890 9 O -0.219 6.219 10 C 0.142 3.858 11 C -0.217 4.217 12 C -0.024 4.024 13 C -0.226 4.226 14 C -0.015 4.015 15 C -0.240 4.240 16 C -0.078 4.078 17 C -0.054 4.054 18 C 0.184 3.816 19 N -0.361 5.361 20 O -0.426 6.426 21 H 0.275 0.725 22 H 0.118 0.882 23 H 0.134 0.866 24 H 0.133 0.867 25 H 0.111 0.889 26 H 0.111 0.889 27 H 0.122 0.878 28 H 0.122 0.878 29 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.059 -9.044 0.731 15.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.218 4.218 3 Si 0.840 3.160 4 H -0.178 1.178 5 H -0.198 1.198 6 H -0.178 1.178 7 C -0.495 4.495 8 H 0.127 0.873 9 O -0.123 6.123 10 C 0.089 3.911 11 C -0.237 4.237 12 C -0.043 4.043 13 C -0.229 4.229 14 C -0.017 4.017 15 C -0.259 4.259 16 C -0.115 4.115 17 C -0.092 4.092 18 C -0.003 4.003 19 N -0.106 5.106 20 O -0.334 6.334 21 H 0.084 0.916 22 H 0.136 0.864 23 H 0.152 0.848 24 H 0.151 0.849 25 H 0.129 0.871 26 H 0.129 0.871 27 H 0.140 0.860 28 H 0.140 0.860 29 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges 12.886 -9.193 0.737 15.846 hybrid contribution -1.262 0.705 -0.023 1.446 sum 11.624 -8.488 0.714 14.411 Atomic orbital electron populations 1.70174 1.08233 1.29235 1.47715 1.26690 0.96834 1.02952 0.95321 0.84608 0.77410 0.73776 0.80211 1.17787 1.19811 1.17843 1.21924 0.92926 0.81018 1.53595 0.87272 1.83932 1.36131 1.12721 1.79542 1.19868 0.91547 0.87655 0.92053 1.20263 1.00013 0.90340 1.13034 1.20922 0.92841 0.96887 0.93676 1.19990 0.93156 0.94942 1.14793 1.20698 0.97710 0.91236 0.92098 1.20609 0.92257 0.99413 1.13617 1.21038 0.88813 0.96085 1.05569 1.20961 0.89122 0.92648 1.06421 1.24322 0.97349 0.88075 0.90546 1.76296 0.99778 1.14556 1.19928 1.88454 1.18836 1.30869 1.95287 0.91584 0.86420 0.84782 0.84943 0.87099 0.87132 0.86038 0.86020 0.73747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.27 13.67 21.61 0.30 -54.97 15 2 C -0.02 -1.08 5.49 84.84 0.47 -0.61 15 3 Si 1.02 41.13 29.55 68.60 2.03 43.16 15 4 H -0.25 -9.49 7.11 99.48 0.71 -8.79 15 5 H -0.27 -10.69 7.11 99.48 0.71 -9.98 15 6 H -0.25 -9.53 7.11 99.48 0.71 -8.83 15 7 C -0.42 -23.72 9.48 67.92 0.64 -23.07 15 8 H 0.11 5.54 5.19 -2.91 -0.02 5.52 15 9 O -0.22 -13.03 9.75 -21.22 -0.21 -13.24 15 10 C 0.14 7.14 6.65 22.64 0.15 7.29 15 11 C -0.22 -9.93 9.97 22.31 0.22 -9.70 15 12 C -0.02 -0.94 9.56 22.60 0.22 -0.73 15 13 C -0.23 -8.22 6.05 -20.03 -0.12 -8.34 15 14 C -0.02 -0.53 6.19 -19.54 -0.12 -0.65 15 15 C -0.24 -10.28 9.15 22.40 0.21 -10.07 15 16 C -0.08 -1.70 6.79 30.10 0.20 -1.49 15 17 C -0.05 -1.03 6.86 30.08 0.21 -0.82 15 18 C 0.18 5.47 7.49 45.46 0.34 5.81 15 19 N -0.36 -10.75 12.20 -42.70 -0.52 -11.27 15 20 O -0.43 -12.17 12.52 -38.77 -0.49 -12.65 15 21 H 0.28 15.18 8.31 -92.71 -0.77 14.41 15 22 H 0.12 5.28 8.06 -2.91 -0.02 5.26 15 23 H 0.13 4.98 6.30 -2.91 -0.02 4.96 15 24 H 0.13 5.51 5.61 -2.91 -0.02 5.50 15 25 H 0.11 1.96 8.14 -2.39 -0.02 1.94 15 26 H 0.11 1.96 8.14 -2.38 -0.02 1.94 15 27 H 0.12 1.73 8.14 -2.38 -0.02 1.71 15 28 H 0.12 1.74 8.14 -2.39 -0.02 1.72 15 29 H 0.41 7.27 9.28 -74.06 -0.69 6.58 15 Total: -1.00 -73.45 258.04 4.03 -69.42 By element: Atomic # 1 Polarization: 21.44 SS G_CDS: 0.51 Total: 21.95 kcal Atomic # 6 Polarization: -44.81 SS G_CDS: 2.41 Total: -42.39 kcal Atomic # 7 Polarization: -66.01 SS G_CDS: -0.23 Total: -66.24 kcal Atomic # 8 Polarization: -25.20 SS G_CDS: -0.69 Total: -25.89 kcal Atomic # 14 Polarization: 41.13 SS G_CDS: 2.03 Total: 43.16 kcal Total: -73.45 4.03 -69.42 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308772507.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.630 kcal (2) G-P(sol) polarization free energy of solvation -73.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds