Wall clock time and date at job start Mon Mar 30 2020 02:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31437 * 1 3 3 Si 1.86803 * 119.99960 * 2 1 4 4 H 1.48500 * 109.46990 * 239.99783 * 3 2 1 5 5 H 1.48494 * 109.46992 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46930 * 120.00203 * 3 2 1 7 7 C 1.38759 * 119.99765 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99615 * 179.97438 * 7 2 1 9 9 O 1.34914 * 120.00098 * 0.02562 * 7 2 1 10 10 C 1.34309 * 117.00023 * 180.02562 * 9 7 2 11 11 O 1.21217 * 120.00238 * 359.97438 * 10 9 7 12 12 C 1.50702 * 120.00104 * 180.02562 * 10 9 7 13 13 H 1.09004 * 110.47059 * 299.00641 * 12 10 9 14 14 C 1.53748 * 110.42252 * 61.45230 * 12 10 9 15 15 N 1.46541 * 105.27058 * 118.81426 * 14 12 10 16 16 C 1.39580 * 110.08694 * 359.94861 * 15 14 12 17 17 C 1.39671 * 129.32076 * 179.97438 * 16 15 14 18 18 C 1.37832 * 120.27821 * 179.97438 * 17 16 15 19 19 C 1.38297 * 120.23249 * 0.08340 * 18 17 16 20 20 C 1.38226 * 119.83621 * 359.97159 * 19 18 17 21 21 C 1.38181 * 120.14865 * 359.97390 * 20 19 18 22 22 H 0.97004 * 120.00134 * 0.02562 * 1 2 3 23 23 H 1.09002 * 110.30202 * 359.83547 * 14 12 10 24 24 H 1.09006 * 110.29679 * 237.78749 * 14 12 10 25 25 H 0.96996 * 124.95358 * 179.97438 * 15 14 12 26 26 H 1.08000 * 119.86333 * 0.03163 * 17 16 15 27 27 H 1.08000 * 119.88311 * 180.02562 * 18 17 16 28 28 H 1.08004 * 120.08207 * 179.97438 * 19 18 17 29 29 H 1.07997 * 119.93029 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6178 0.0000 4 1 3.1022 1.6964 -1.2125 5 1 1.2834 2.7464 0.0006 6 1 3.1021 1.6964 1.2125 7 6 2.0081 -1.2017 -0.0005 8 1 3.0882 -1.2017 -0.0010 9 8 1.3335 -2.3701 -0.0016 10 6 2.0650 -3.4965 -0.0015 11 8 3.2755 -3.4332 -0.0010 12 6 1.3808 -4.8393 -0.0032 13 1 0.7655 -4.9547 0.8891 14 6 0.5252 -5.0038 -1.2700 15 7 1.0916 -6.1593 -1.9710 16 6 2.1722 -6.6734 -1.2524 17 6 2.9959 -7.7613 -1.5503 18 6 4.0223 -8.1096 -0.6988 19 6 4.2432 -7.3851 0.4583 20 6 3.4317 -6.3078 0.7607 21 6 2.4022 -5.9540 -0.0903 22 1 -0.4850 0.8401 -0.0004 23 1 0.5958 -4.1119 -1.8926 24 1 -0.5138 -5.1960 -1.0022 25 1 0.7637 -6.5148 -2.8118 26 1 2.8285 -8.3316 -2.4521 27 1 4.6556 -8.9518 -0.9356 28 1 5.0479 -7.6604 1.1240 29 1 3.6026 -5.7413 1.6641 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308881556.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:32 Heat of formation + Delta-G solvation = -63.938593 kcal Electronic energy + Delta-G solvation = -15784.265683 eV Core-core repulsion = 13057.799091 eV Total energy + Delta-G solvation = -2726.466592 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.82344 -40.37899 -37.33304 -37.02621 -34.31712 -33.08044 -30.22167 -30.12060 -27.50268 -24.52262 -23.69867 -22.58896 -21.29641 -19.87704 -18.64347 -18.33729 -17.08982 -16.66185 -16.48361 -16.35154 -16.10092 -15.20334 -14.78303 -14.48710 -14.15852 -13.60358 -13.56282 -13.48401 -13.34938 -12.91000 -12.45105 -12.33970 -12.17749 -12.02836 -11.74425 -11.15652 -10.95759 -10.70584 -9.69974 -8.55598 -8.29904 -6.34920 0.48865 0.71292 1.29260 1.33005 1.48434 1.61343 2.09482 2.42179 2.64836 2.95041 3.13183 3.48728 3.57652 4.04287 4.23293 4.29535 4.50904 4.58410 4.68420 4.71783 4.81495 4.86833 5.13104 5.20278 5.43621 5.61929 5.74992 5.76333 5.81614 6.27006 6.63516 6.89838 6.99205 7.74699 8.64982 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.044796 B = 0.006521 C = 0.005992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.908822 B = 4292.856511 C = 4671.886594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.000 4.000 3 Si 1.015 2.985 4 H -0.263 1.263 5 H -0.258 1.258 6 H -0.263 1.263 7 C -0.423 4.423 8 H 0.078 0.922 9 O -0.238 6.238 10 C 0.404 3.596 11 O -0.572 6.572 12 C -0.036 4.036 13 H 0.127 0.873 14 C 0.136 3.864 15 N -0.736 5.736 16 C 0.188 3.812 17 C -0.188 4.188 18 C -0.068 4.068 19 C -0.183 4.183 20 C -0.057 4.057 21 C -0.184 4.184 22 H 0.279 0.721 23 H 0.054 0.946 24 H 0.108 0.892 25 H 0.427 0.573 26 H 0.145 0.855 27 H 0.159 0.841 28 H 0.143 0.857 29 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.828 -13.559 -2.523 13.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.201 4.201 3 Si 0.833 3.167 4 H -0.188 1.188 5 H -0.181 1.181 6 H -0.187 1.187 7 C -0.499 4.499 8 H 0.095 0.905 9 O -0.146 6.146 10 C 0.251 3.749 11 O -0.469 6.469 12 C -0.055 4.055 13 H 0.145 0.855 14 C 0.011 3.989 15 N -0.371 5.371 16 C 0.084 3.916 17 C -0.211 4.211 18 C -0.086 4.086 19 C -0.203 4.203 20 C -0.076 4.076 21 C -0.189 4.189 22 H 0.089 0.911 23 H 0.073 0.927 24 H 0.126 0.874 25 H 0.267 0.733 26 H 0.163 0.837 27 H 0.176 0.824 28 H 0.161 0.839 29 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 1.801 -13.263 -2.545 13.625 hybrid contribution 0.165 0.990 -0.136 1.013 sum 1.966 -12.273 -2.681 12.715 Atomic orbital electron populations 1.70052 1.07482 1.29454 1.46659 1.26473 0.96893 1.02101 0.94640 0.84732 0.77680 0.74549 0.79696 1.18804 1.18125 1.18712 1.21347 0.92059 0.81269 1.55229 0.90465 1.83890 1.40022 1.13918 1.76799 1.24034 0.86702 0.87684 0.76529 1.90524 1.17052 1.88397 1.50884 1.20355 0.96369 0.86439 1.02328 0.85515 1.21610 0.97672 0.88988 0.90589 1.44604 1.33143 1.32928 1.26399 1.18588 0.88971 0.93671 0.90324 1.20637 0.98435 0.98559 1.03437 1.21183 0.95809 0.98975 0.92671 1.21107 1.01762 0.97348 1.00067 1.20490 0.92905 0.96036 0.98165 1.19586 1.01483 0.98726 0.99056 0.91119 0.92747 0.87375 0.73263 0.83722 0.82373 0.83932 0.87684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.99 13.67 21.63 0.30 -52.69 15 2 C 0.00 -0.03 5.49 84.88 0.47 0.44 15 3 Si 1.01 43.88 29.55 68.60 2.03 45.91 15 4 H -0.26 -11.04 7.11 99.48 0.71 -10.33 15 5 H -0.26 -10.17 7.11 99.48 0.71 -9.46 15 6 H -0.26 -10.98 7.11 99.48 0.71 -10.28 15 7 C -0.42 -26.13 9.65 67.94 0.66 -25.48 15 8 H 0.08 4.88 6.86 -2.91 -0.02 4.86 15 9 O -0.24 -14.18 9.70 14.95 0.14 -14.03 15 10 C 0.40 21.19 7.00 71.24 0.50 21.69 15 11 O -0.57 -33.04 14.93 20.75 0.31 -32.73 15 12 C -0.04 -1.41 3.55 -11.80 -0.04 -1.45 15 13 H 0.13 4.51 8.14 -2.38 -0.02 4.49 15 14 C 0.14 4.53 7.58 86.62 0.66 5.18 15 15 N -0.74 -20.77 6.53 -337.77 -2.20 -22.98 15 16 C 0.19 5.95 7.03 38.34 0.27 6.22 15 17 C -0.19 -4.79 10.07 22.52 0.23 -4.56 15 18 C -0.07 -1.60 10.02 22.19 0.22 -1.38 15 19 C -0.18 -5.04 10.06 22.28 0.22 -4.82 15 20 C -0.06 -2.00 9.49 22.25 0.21 -1.79 15 21 C -0.18 -6.81 5.08 -19.56 -0.10 -6.91 15 22 H 0.28 14.92 8.31 -92.71 -0.77 14.15 15 23 H 0.05 2.08 7.68 -2.39 -0.02 2.06 15 24 H 0.11 2.91 8.14 -2.38 -0.02 2.89 15 25 H 0.43 9.00 8.96 -92.71 -0.83 8.17 15 26 H 0.15 2.74 8.06 -2.91 -0.02 2.72 15 27 H 0.16 2.45 8.06 -2.91 -0.02 2.43 15 28 H 0.14 3.12 8.06 -2.91 -0.02 3.09 15 29 H 0.10 3.79 8.06 -2.91 -0.02 3.76 15 Total: -1.00 -75.04 261.03 4.21 -70.83 By element: Atomic # 1 Polarization: 18.20 SS G_CDS: 0.35 Total: 18.55 kcal Atomic # 6 Polarization: -16.15 SS G_CDS: 3.29 Total: -12.86 kcal Atomic # 7 Polarization: -73.76 SS G_CDS: -1.91 Total: -75.67 kcal Atomic # 8 Polarization: -47.22 SS G_CDS: 0.45 Total: -46.77 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -75.04 4.21 -70.83 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308881556.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.895 kcal (2) G-P(sol) polarization free energy of solvation -75.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds