Wall clock time and date at job start Mon Mar 30 2020 02:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31448 * 1 3 3 Si 1.86797 * 119.99565 * 2 1 4 4 H 1.48498 * 109.47248 * 269.99429 * 3 2 1 5 5 H 1.48493 * 109.47306 * 29.99957 * 3 2 1 6 6 H 1.48508 * 109.46811 * 150.00038 * 3 2 1 7 7 C 1.38751 * 119.99965 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00045 * 180.02562 * 7 2 1 9 9 O 1.34925 * 120.00190 * 0.02562 * 7 2 1 10 10 C 1.34308 * 116.99635 * 179.97438 * 9 7 2 11 11 O 1.21205 * 120.00574 * 359.97438 * 10 9 7 12 12 C 1.50702 * 119.99551 * 179.97438 * 10 9 7 13 13 H 1.09001 * 110.34557 * 317.87689 * 12 10 9 14 14 C 1.53753 * 110.30065 * 80.00227 * 12 10 9 15 15 C 1.51224 * 104.64474 * 118.98529 * 14 12 10 16 16 C 1.38166 * 130.98647 * 179.97438 * 15 14 12 17 17 C 1.38234 * 120.14837 * 180.02562 * 16 15 14 18 18 C 1.38299 * 119.83785 * 359.97438 * 17 16 15 19 19 C 1.37828 * 120.22939 * 0.02562 * 18 17 16 20 20 C 1.38594 * 108.53817 * 359.94134 * 15 14 12 21 21 N 1.39576 * 111.65308 * 359.97438 * 20 15 14 22 22 H 0.96994 * 120.00433 * 0.02562 * 1 2 3 23 23 H 1.09002 * 110.42286 * 0.16016 * 14 12 10 24 24 H 1.09000 * 110.42111 * 237.81081 * 14 12 10 25 25 H 1.08002 * 119.92716 * 359.97438 * 16 15 14 26 26 H 1.08006 * 120.07836 * 180.02562 * 17 16 15 27 27 H 1.07994 * 119.88551 * 180.02562 * 18 17 16 28 28 H 1.08001 * 119.86227 * 180.02562 * 19 18 17 29 29 H 0.97001 * 124.95711 * 179.97438 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3145 0.0000 0.0000 3 14 2.2483 1.6178 0.0000 4 1 2.4959 2.0464 -1.4000 5 1 1.4458 2.6526 0.7000 6 1 3.5460 1.4402 0.7001 7 6 2.0082 -1.2016 0.0005 8 1 3.0882 -1.2016 0.0010 9 8 1.3336 -2.3701 0.0005 10 6 2.0652 -3.4965 0.0005 11 8 3.2756 -3.4330 0.0001 12 6 1.3811 -4.8392 0.0011 13 1 0.5339 -4.8326 0.6869 14 6 0.9153 -5.2012 -1.4187 15 6 1.6587 -6.4753 -1.7518 16 6 1.6433 -7.2632 -2.8867 17 6 2.4252 -8.4013 -2.9524 18 6 3.2244 -8.7500 -1.8789 19 6 3.2432 -7.9673 -0.7446 20 6 2.4566 -6.8154 -0.6708 21 7 2.3313 -5.8954 0.3714 22 1 -0.4850 0.8400 -0.0004 23 1 1.1826 -4.4106 -2.1199 24 1 -0.1608 -5.3738 -1.4336 25 1 1.0184 -6.9898 -3.7240 26 1 2.4126 -9.0162 -3.8402 27 1 3.8358 -9.6388 -1.9296 28 1 3.8698 -8.2449 0.0900 29 1 2.8019 -5.9472 1.2180 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308894739.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:57 Heat of formation + Delta-G solvation = -43.582368 kcal Electronic energy + Delta-G solvation = -15581.840912 eV Core-core repulsion = 12856.257032 eV Total energy + Delta-G solvation = -2725.583879 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.34124 -38.71863 -36.14536 -34.83318 -32.21373 -31.77284 -29.35468 -28.60509 -25.61012 -23.55872 -21.88730 -21.04704 -19.96123 -17.79184 -17.26362 -16.83324 -15.56914 -15.51078 -14.94597 -14.37127 -14.22116 -13.71274 -13.51933 -13.28415 -12.51644 -12.29081 -12.01231 -11.85069 -11.61928 -11.41644 -11.13920 -10.65183 -10.46420 -10.43950 -10.21792 -9.84685 -9.02072 -8.61607 -8.57106 -7.12936 -6.44775 -4.13162 1.60788 1.80453 3.06045 3.15999 3.21340 3.34527 3.56726 3.96068 4.06403 4.53084 4.82469 4.95428 5.13532 5.22435 5.25030 5.50344 5.64292 5.70369 5.73352 6.02492 6.14649 6.28261 6.50854 6.62953 6.71037 6.79029 6.94146 7.34628 7.39135 7.90745 8.05228 8.66101 9.03647 9.79623 10.72505 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.054540 B = 0.005623 C = 0.005481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.259172 B = 4978.060293 C = 5106.883228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.043 3.957 3 Si 0.943 3.057 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.383 4.383 8 H 0.095 0.905 9 O -0.211 6.211 10 C 0.382 3.618 11 O -0.545 6.545 12 C 0.167 3.833 13 H 0.104 0.896 14 C -0.069 4.069 15 C -0.170 4.170 16 C -0.060 4.060 17 C -0.182 4.182 18 C -0.078 4.078 19 C -0.184 4.184 20 C 0.208 3.792 21 N -0.717 5.717 22 H 0.270 0.730 23 H 0.091 0.909 24 H 0.095 0.905 25 H 0.119 0.881 26 H 0.118 0.882 27 H 0.119 0.881 28 H 0.115 0.885 29 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.942 -12.950 -2.588 13.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.161 4.161 3 Si 0.768 3.232 4 H -0.198 1.198 5 H -0.203 1.203 6 H -0.191 1.191 7 C -0.459 4.459 8 H 0.112 0.888 9 O -0.117 6.117 10 C 0.226 3.774 11 O -0.442 6.442 12 C 0.059 3.941 13 H 0.121 0.879 14 C -0.107 4.107 15 C -0.175 4.175 16 C -0.079 4.079 17 C -0.202 4.202 18 C -0.097 4.097 19 C -0.207 4.207 20 C 0.103 3.897 21 N -0.348 5.348 22 H 0.080 0.920 23 H 0.109 0.891 24 H 0.113 0.887 25 H 0.137 0.863 26 H 0.136 0.864 27 H 0.137 0.863 28 H 0.133 0.867 29 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 0.987 -12.595 -2.514 12.882 hybrid contribution 0.731 0.903 0.431 1.239 sum 1.718 -11.693 -2.083 12.001 Atomic orbital electron populations 1.69986 1.05965 1.27768 1.46303 1.25331 0.95827 0.98828 0.96109 0.85678 0.79044 0.79722 0.78797 1.19814 1.20265 1.19138 1.21223 0.92384 0.79795 1.52543 0.88762 1.83875 1.39301 1.13247 1.75319 1.23556 0.87068 0.87350 0.79437 1.90565 1.15576 1.87811 1.50232 1.20704 0.91014 0.84193 0.98180 0.87851 1.20915 1.00376 0.95176 0.94207 1.19945 1.03077 0.99051 0.95411 1.20301 0.98024 0.93680 0.95875 1.20742 1.01106 0.98921 0.99405 1.20685 0.97829 0.98416 0.92722 1.20271 1.03974 0.96258 1.00229 1.18345 0.93378 0.89807 0.88126 1.44548 1.49257 1.24076 1.16876 0.92005 0.89108 0.88719 0.86332 0.86420 0.86343 0.86693 0.74807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.02 13.67 55.48 0.76 -24.26 15 2 C 0.04 1.22 5.49 -17.53 -0.10 1.12 15 3 Si 0.94 21.28 29.55 -169.99 -5.02 16.25 15 4 H -0.27 -5.98 7.11 56.52 0.40 -5.58 15 5 H -0.28 -6.00 7.11 56.52 0.40 -5.60 15 6 H -0.27 -5.95 7.11 56.52 0.40 -5.55 15 7 C -0.38 -11.33 9.65 30.92 0.30 -11.03 15 8 H 0.09 2.83 6.86 -52.49 -0.36 2.47 15 9 O -0.21 -5.98 9.75 -20.71 -0.20 -6.18 15 10 C 0.38 9.43 6.99 36.01 0.25 9.68 15 11 O -0.55 -14.95 15.79 -19.05 -0.30 -15.25 15 12 C 0.17 3.12 4.24 -68.52 -0.29 2.83 15 13 H 0.10 1.73 8.14 -51.93 -0.42 1.31 15 14 C -0.07 -1.17 6.57 -27.23 -0.18 -1.35 15 15 C -0.17 -2.75 6.23 -104.26 -0.65 -3.40 15 16 C -0.06 -0.83 10.04 -39.61 -0.40 -1.23 15 17 C -0.18 -2.27 10.06 -39.56 -0.40 -2.67 15 18 C -0.08 -0.97 10.02 -39.71 -0.40 -1.37 15 19 C -0.18 -2.61 10.07 -39.19 -0.39 -3.00 15 20 C 0.21 3.41 7.03 -83.66 -0.59 2.82 15 21 N -0.72 -12.19 5.75 -52.61 -0.30 -12.49 15 22 H 0.27 7.17 8.31 -40.82 -0.34 6.83 15 23 H 0.09 1.67 7.70 -51.93 -0.40 1.27 15 24 H 0.09 1.34 8.14 -51.93 -0.42 0.92 15 25 H 0.12 1.39 8.06 -52.49 -0.42 0.96 15 26 H 0.12 1.16 8.06 -52.48 -0.42 0.74 15 27 H 0.12 1.14 8.06 -52.49 -0.42 0.72 15 28 H 0.11 1.41 8.06 -52.49 -0.42 0.99 15 29 H 0.41 6.38 8.96 -40.82 -0.37 6.02 15 LS Contribution 262.55 15.07 3.96 3.96 Total: -1.00 -33.33 262.55 -6.75 -40.08 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -2.80 Total: 5.50 kcal Atomic # 6 Polarization: -4.76 SS G_CDS: -2.84 Total: -7.60 kcal Atomic # 7 Polarization: -37.21 SS G_CDS: 0.46 Total: -36.76 kcal Atomic # 8 Polarization: -20.93 SS G_CDS: -0.50 Total: -21.43 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -33.33 -6.75 -40.08 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308894739.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.503 kcal (2) G-P(sol) polarization free energy of solvation -33.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds