Wall clock time and date at job start Mon Mar 30 2020 02:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31448 * 1 3 3 Si 1.86797 * 119.99565 * 2 1 4 4 H 1.48498 * 109.47248 * 269.99429 * 3 2 1 5 5 H 1.48493 * 109.47306 * 29.99957 * 3 2 1 6 6 H 1.48508 * 109.46811 * 150.00038 * 3 2 1 7 7 C 1.38751 * 119.99965 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00045 * 180.02562 * 7 2 1 9 9 O 1.34925 * 120.00190 * 0.02562 * 7 2 1 10 10 C 1.34308 * 116.99635 * 179.97438 * 9 7 2 11 11 O 1.21205 * 120.00574 * 359.97438 * 10 9 7 12 12 C 1.50702 * 119.99551 * 179.97438 * 10 9 7 13 13 H 1.09001 * 110.34557 * 317.87689 * 12 10 9 14 14 C 1.53753 * 110.30065 * 80.00227 * 12 10 9 15 15 C 1.51224 * 104.64474 * 118.98529 * 14 12 10 16 16 C 1.38166 * 130.98647 * 179.97438 * 15 14 12 17 17 C 1.38234 * 120.14837 * 180.02562 * 16 15 14 18 18 C 1.38299 * 119.83785 * 359.97438 * 17 16 15 19 19 C 1.37828 * 120.22939 * 0.02562 * 18 17 16 20 20 C 1.38594 * 108.53817 * 359.94134 * 15 14 12 21 21 N 1.39576 * 111.65308 * 359.97438 * 20 15 14 22 22 H 0.96994 * 120.00433 * 0.02562 * 1 2 3 23 23 H 1.09002 * 110.42286 * 0.16016 * 14 12 10 24 24 H 1.09000 * 110.42111 * 237.81081 * 14 12 10 25 25 H 1.08002 * 119.92716 * 359.97438 * 16 15 14 26 26 H 1.08006 * 120.07836 * 180.02562 * 17 16 15 27 27 H 1.07994 * 119.88551 * 180.02562 * 18 17 16 28 28 H 1.08001 * 119.86227 * 180.02562 * 19 18 17 29 29 H 0.97001 * 124.95711 * 179.97438 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3145 0.0000 0.0000 3 14 2.2483 1.6178 0.0000 4 1 2.4959 2.0464 -1.4000 5 1 1.4458 2.6526 0.7000 6 1 3.5460 1.4402 0.7001 7 6 2.0082 -1.2016 0.0005 8 1 3.0882 -1.2016 0.0010 9 8 1.3336 -2.3701 0.0005 10 6 2.0652 -3.4965 0.0005 11 8 3.2756 -3.4330 0.0001 12 6 1.3811 -4.8392 0.0011 13 1 0.5339 -4.8326 0.6869 14 6 0.9153 -5.2012 -1.4187 15 6 1.6587 -6.4753 -1.7518 16 6 1.6433 -7.2632 -2.8867 17 6 2.4252 -8.4013 -2.9524 18 6 3.2244 -8.7500 -1.8789 19 6 3.2432 -7.9673 -0.7446 20 6 2.4566 -6.8154 -0.6708 21 7 2.3313 -5.8954 0.3714 22 1 -0.4850 0.8400 -0.0004 23 1 1.1826 -4.4106 -2.1199 24 1 -0.1608 -5.3738 -1.4336 25 1 1.0184 -6.9898 -3.7240 26 1 2.4126 -9.0162 -3.8402 27 1 3.8358 -9.6388 -1.9296 28 1 3.8698 -8.2449 0.0900 29 1 2.8019 -5.9472 1.2180 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308894739.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:57 Heat of formation + Delta-G solvation = -65.236685 kcal Electronic energy + Delta-G solvation = -15582.779913 eV Core-core repulsion = 12856.257032 eV Total energy + Delta-G solvation = -2726.522881 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.78873 -40.49140 -37.67076 -36.65670 -34.35427 -32.97840 -30.66605 -29.79573 -27.63923 -25.12029 -23.07861 -22.18760 -21.73603 -19.94467 -18.78282 -18.42977 -17.09177 -16.84829 -16.62036 -16.16554 -15.99499 -15.09018 -14.83300 -14.56423 -13.99171 -13.64217 -13.62131 -13.45990 -13.21648 -12.99035 -12.47468 -12.34950 -12.20103 -12.06560 -11.71127 -11.58898 -10.86664 -10.73408 -9.65264 -8.59573 -8.34514 -6.38467 0.52919 0.70057 1.23053 1.31687 1.48189 1.55054 1.98129 2.29811 2.71941 2.92685 3.01918 3.54246 3.69013 4.09807 4.20556 4.30634 4.44031 4.55292 4.64842 4.72769 4.80825 4.94801 5.11480 5.18636 5.44639 5.62723 5.72807 5.77670 5.78468 6.26171 6.57888 6.82351 6.87345 7.69359 8.62054 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.054540 B = 0.005623 C = 0.005481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.259172 B = 4978.060293 C = 5106.883228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.000 4.000 3 Si 1.016 2.984 4 H -0.259 1.259 5 H -0.257 1.257 6 H -0.266 1.266 7 C -0.425 4.425 8 H 0.077 0.923 9 O -0.236 6.236 10 C 0.382 3.618 11 O -0.578 6.578 12 C 0.174 3.826 13 H 0.125 0.875 14 C -0.066 4.066 15 C -0.193 4.193 16 C -0.068 4.068 17 C -0.174 4.174 18 C -0.076 4.076 19 C -0.190 4.190 20 C 0.177 3.823 21 N -0.721 5.721 22 H 0.281 0.719 23 H 0.066 0.934 24 H 0.121 0.879 25 H 0.138 0.862 26 H 0.151 0.849 27 H 0.153 0.847 28 H 0.130 0.870 29 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.161 -14.084 -3.448 14.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.201 4.201 3 Si 0.834 3.166 4 H -0.184 1.184 5 H -0.181 1.181 6 H -0.191 1.191 7 C -0.501 4.501 8 H 0.095 0.905 9 O -0.144 6.144 10 C 0.227 3.773 11 O -0.475 6.475 12 C 0.065 3.935 13 H 0.142 0.858 14 C -0.103 4.103 15 C -0.197 4.197 16 C -0.086 4.086 17 C -0.194 4.194 18 C -0.094 4.094 19 C -0.212 4.212 20 C 0.074 3.926 21 N -0.353 5.353 22 H 0.090 0.910 23 H 0.085 0.915 24 H 0.140 0.860 25 H 0.156 0.844 26 H 0.168 0.832 27 H 0.171 0.829 28 H 0.148 0.852 29 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 1.199 -13.777 -3.386 14.237 hybrid contribution 0.701 1.081 0.635 1.436 sum 1.900 -12.696 -2.751 13.129 Atomic orbital electron populations 1.70057 1.07495 1.29527 1.46308 1.26500 0.96908 1.02156 0.94514 0.84657 0.77653 0.74656 0.79590 1.18408 1.18074 1.19078 1.21384 0.92049 0.81244 1.55377 0.90493 1.83898 1.40108 1.13991 1.76366 1.24943 0.87016 0.88498 0.76800 1.90519 1.17263 1.88460 1.51301 1.20800 0.91310 0.81135 1.00212 0.85789 1.20884 1.02159 0.95090 0.92186 1.20093 1.03849 0.99170 0.96624 1.20644 0.98526 0.93851 0.95618 1.21200 0.99549 0.98250 1.00412 1.21149 0.97545 0.98954 0.91770 1.20612 1.03504 0.95613 1.01512 1.18671 0.94877 0.90867 0.88181 1.44507 1.49685 1.23698 1.17443 0.91005 0.91535 0.86046 0.84422 0.83175 0.82926 0.85245 0.74412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.58 13.67 21.62 0.30 -52.29 15 2 C 0.00 0.01 5.49 84.87 0.47 0.48 15 3 Si 1.02 43.59 29.55 68.60 2.03 45.62 15 4 H -0.26 -10.54 7.11 99.48 0.71 -9.84 15 5 H -0.26 -10.10 7.11 99.48 0.71 -9.40 15 6 H -0.27 -11.30 7.11 99.48 0.71 -10.60 15 7 C -0.42 -26.10 9.65 67.94 0.66 -25.44 15 8 H 0.08 4.85 6.86 -2.91 -0.02 4.83 15 9 O -0.24 -13.98 9.75 14.85 0.14 -13.84 15 10 C 0.38 19.64 6.99 71.24 0.50 20.14 15 11 O -0.58 -33.05 15.79 20.79 0.33 -32.72 15 12 C 0.17 6.63 4.24 44.44 0.19 6.82 15 13 H 0.12 4.18 8.14 -2.39 -0.02 4.16 15 14 C -0.07 -2.23 6.57 30.27 0.20 -2.03 15 15 C -0.19 -6.08 6.23 -19.63 -0.12 -6.20 15 16 C -0.07 -1.74 10.04 22.25 0.22 -1.51 15 17 C -0.17 -3.73 10.06 22.28 0.22 -3.51 15 18 C -0.08 -1.63 10.02 22.19 0.22 -1.41 15 19 C -0.19 -5.00 10.07 22.52 0.23 -4.77 15 20 C 0.18 5.67 7.03 38.34 0.27 5.94 15 21 N -0.72 -24.72 5.75 -320.35 -1.84 -26.56 15 22 H 0.28 14.85 8.31 -92.71 -0.77 14.08 15 23 H 0.07 2.55 7.70 -2.39 -0.02 2.53 15 24 H 0.12 3.36 8.14 -2.39 -0.02 3.34 15 25 H 0.14 2.88 8.06 -2.91 -0.02 2.86 15 26 H 0.15 2.24 8.06 -2.91 -0.02 2.21 15 27 H 0.15 2.22 8.06 -2.91 -0.02 2.19 15 28 H 0.13 2.93 8.06 -2.91 -0.02 2.90 15 29 H 0.42 13.10 8.96 -92.71 -0.83 12.27 15 Total: -1.00 -74.08 262.55 4.35 -69.73 By element: Atomic # 1 Polarization: 21.20 SS G_CDS: 0.35 Total: 21.55 kcal Atomic # 6 Polarization: -14.54 SS G_CDS: 3.05 Total: -11.49 kcal Atomic # 7 Polarization: -77.30 SS G_CDS: -1.55 Total: -78.84 kcal Atomic # 8 Polarization: -47.03 SS G_CDS: 0.47 Total: -46.56 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Total: -74.08 4.35 -69.73 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308894739.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.494 kcal (2) G-P(sol) polarization free energy of solvation -74.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds