Wall clock time and date at job start Mon Mar 30 2020 03:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30832 * 1 3 3 Si 1.86797 * 120.00087 * 2 1 4 4 H 1.48494 * 109.47177 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47274 * 300.00433 * 3 2 1 6 6 H 1.48502 * 109.46881 * 60.00247 * 3 2 1 7 7 C 1.39929 * 120.00037 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00282 * 196.15856 * 7 2 1 9 9 C 1.41408 * 119.99987 * 16.15696 * 7 2 1 10 10 C 1.40789 * 120.20753 * 33.31835 * 9 7 2 11 11 C 1.37652 * 119.89444 * 180.27486 * 10 9 7 12 12 C 1.38527 * 120.32351 * 359.45129 * 11 10 9 13 13 C 1.39288 * 120.42451 * 0.25422 * 12 11 10 14 14 N 1.39776 * 119.94995 * 180.02562 * 13 12 11 15 15 C 1.36685 * 120.00402 * 0.02562 * 14 13 12 16 16 C 1.35043 * 120.00506 * 186.12905 * 15 14 13 17 17 C 1.41197 * 119.99630 * 9.23398 * 16 15 14 18 18 O 1.21712 * 120.00579 * 7.00767 * 17 16 15 19 19 O 1.34977 * 119.99733 * 187.00509 * 17 16 15 20 20 C 1.38325 * 120.09793 * 0.02776 * 13 12 11 21 21 H 0.96999 * 119.99854 * 359.97438 * 1 2 3 22 22 H 1.07995 * 120.05666 * 0.02562 * 10 9 7 23 23 H 1.07998 * 119.83910 * 179.73039 * 11 10 9 24 24 H 1.08003 * 119.78536 * 180.28116 * 12 11 10 25 25 H 0.97001 * 119.99781 * 180.02562 * 14 13 12 26 26 H 1.08004 * 119.99487 * 6.11828 * 15 14 13 27 27 H 1.07999 * 120.00104 * 189.24431 * 16 15 14 28 28 H 0.96707 * 113.99638 * 179.97438 * 19 17 16 29 29 H 1.08005 * 120.16209 * 179.97438 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7023 1.3463 -0.0006 5 1 1.8835 2.3965 -1.2125 6 1 1.8836 2.3963 1.2126 7 6 2.0080 -1.2118 -0.0005 8 1 3.0559 -1.2304 0.2597 9 6 1.3428 -2.4121 -0.3419 10 6 0.3076 -2.4016 -1.2960 11 6 -0.3394 -3.5729 -1.6192 12 6 0.0306 -4.7650 -1.0185 13 6 1.0571 -4.7919 -0.0774 14 7 1.4227 -6.0004 0.5222 15 6 0.7735 -7.1548 0.1845 16 6 1.0399 -8.2990 0.8505 17 6 1.8367 -8.2684 2.0157 18 8 2.1774 -7.2015 2.4923 19 8 2.2207 -9.4224 2.6012 20 6 1.7152 -3.6243 0.2648 21 1 -0.4850 0.8401 0.0004 22 1 0.0187 -1.4756 -1.7705 23 1 -1.1363 -3.5631 -2.3480 24 1 -0.4798 -5.6796 -1.2820 25 1 2.1372 -6.0198 1.1779 26 1 0.0474 -7.1519 -0.6150 27 1 0.6435 -9.2374 0.4919 28 1 2.7635 -9.3004 3.3922 29 1 2.5110 -3.6438 0.9947 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313432316.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:32 Heat of formation + Delta-G solvation = -54.472107 kcal Electronic energy + Delta-G solvation = -15199.165295 eV Core-core repulsion = 12473.109201 eV Total energy + Delta-G solvation = -2726.056094 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.18217 -38.45677 -36.43791 -35.24921 -33.48758 -31.25529 -30.03067 -27.66382 -25.51464 -23.99735 -21.45870 -20.88207 -19.50104 -18.17609 -17.65596 -16.26690 -15.85186 -15.32186 -15.11550 -14.94507 -14.20085 -13.46755 -13.10411 -13.01667 -12.73302 -12.50824 -12.27731 -11.62142 -11.34595 -11.22127 -11.06870 -10.67748 -10.48190 -10.07839 -10.04209 -9.55463 -9.28295 -8.48313 -7.60763 -6.86797 -6.70100 -4.51226 1.45009 2.66583 2.90992 3.04373 3.09239 3.10823 3.51483 3.76537 3.87180 3.94767 4.54078 5.16637 5.49924 5.89348 5.92045 6.10544 6.18302 6.27784 6.67981 6.75386 6.78344 6.85722 7.09111 7.12594 7.43189 7.59082 7.82342 7.91841 8.13191 8.18323 8.34553 8.48953 8.76548 8.79777 10.13335 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.042457 B = 0.005428 C = 0.004924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.327538 B = 5157.640867 C = 5685.472945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.078 3.922 3 Si 0.909 3.091 4 H -0.260 1.260 5 H -0.271 1.271 6 H -0.274 1.274 7 C -0.469 4.469 8 H 0.081 0.919 9 C 0.138 3.862 10 C -0.168 4.168 11 C -0.080 4.080 12 C -0.274 4.274 13 C 0.152 3.848 14 N -0.617 5.617 15 C 0.256 3.744 16 C -0.401 4.401 17 C 0.521 3.479 18 O -0.565 6.565 19 O -0.518 6.518 20 C -0.243 4.243 21 H 0.281 0.719 22 H 0.111 0.889 23 H 0.096 0.904 24 H 0.096 0.904 25 H 0.421 0.579 26 H 0.161 0.839 27 H 0.139 0.861 28 H 0.398 0.602 29 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.885 -8.540 -0.485 8.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.140 4.140 3 Si 0.733 3.267 4 H -0.184 1.184 5 H -0.197 1.197 6 H -0.200 1.200 7 C -0.499 4.499 8 H 0.099 0.901 9 C 0.135 3.865 10 C -0.188 4.188 11 C -0.100 4.100 12 C -0.295 4.295 13 C 0.058 3.942 14 N -0.238 5.238 15 C 0.117 3.883 16 C -0.430 4.430 17 C 0.375 3.625 18 O -0.461 6.461 19 O -0.327 6.327 20 C -0.265 4.265 21 H 0.092 0.908 22 H 0.129 0.871 23 H 0.114 0.886 24 H 0.114 0.886 25 H 0.270 0.730 26 H 0.178 0.822 27 H 0.157 0.843 28 H 0.253 0.747 29 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 0.515 -8.027 -0.750 8.079 hybrid contribution 0.769 0.725 0.819 1.337 sum 1.284 -7.303 0.069 7.415 Atomic orbital electron populations 1.69815 1.07550 1.29368 1.35223 1.25871 0.94751 1.01226 0.92146 0.86252 0.80981 0.80867 0.78593 1.18374 1.19661 1.19953 1.19559 0.97672 0.90850 1.41777 0.90133 1.17384 0.90031 0.91328 0.87765 1.21212 1.00724 0.96497 1.00368 1.20486 0.98231 0.92702 0.98533 1.20048 1.04677 0.97811 1.06969 1.17799 0.96788 0.84418 0.95188 1.43542 1.34099 1.05008 1.41123 1.21946 0.88857 0.84638 0.92857 1.20020 1.20206 0.99349 1.03412 1.19543 0.77901 0.80818 0.84225 1.90611 1.58534 1.30911 1.66040 1.85090 1.67288 1.35787 1.44495 1.20714 1.06894 0.91946 1.06935 0.90788 0.87117 0.88591 0.88616 0.73031 0.82215 0.84340 0.74716 0.88222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.20 11.48 55.55 0.64 -19.56 15 2 C 0.08 1.92 5.11 -17.34 -0.09 1.84 15 3 Si 0.91 18.35 29.59 -169.99 -5.03 13.32 15 4 H -0.26 -5.21 7.11 56.52 0.40 -4.81 15 5 H -0.27 -5.36 7.11 56.52 0.40 -4.96 15 6 H -0.27 -5.48 7.11 56.52 0.40 -5.08 15 7 C -0.47 -12.18 9.01 -37.74 -0.34 -12.52 15 8 H 0.08 2.03 7.90 -52.49 -0.41 1.61 15 9 C 0.14 3.57 5.46 -106.85 -0.58 2.99 15 10 C -0.17 -4.16 8.65 -38.83 -0.34 -4.50 15 11 C -0.08 -1.76 10.02 -39.69 -0.40 -2.15 15 12 C -0.27 -5.65 9.31 -39.08 -0.36 -6.01 15 13 C 0.15 3.30 6.61 -83.81 -0.55 2.75 15 14 N -0.62 -11.67 5.11 -10.53 -0.05 -11.72 15 15 C 0.26 3.95 10.05 -16.52 -0.17 3.79 15 16 C -0.40 -5.87 9.97 -39.59 -0.39 -6.26 15 17 C 0.52 8.31 7.98 31.86 0.25 8.57 15 18 O -0.56 -10.64 14.23 -19.43 -0.28 -10.92 15 19 O -0.52 -6.68 13.54 -41.25 -0.56 -7.24 15 20 C -0.24 -5.89 9.63 -38.67 -0.37 -6.26 15 21 H 0.28 6.48 8.30 -40.82 -0.34 6.15 15 22 H 0.11 2.81 6.78 -52.49 -0.36 2.45 15 23 H 0.10 1.82 8.06 -52.49 -0.42 1.40 15 24 H 0.10 1.64 5.96 -52.48 -0.31 1.33 15 25 H 0.42 8.27 5.38 -41.22 -0.22 8.05 15 26 H 0.16 2.03 5.93 -52.48 -0.31 1.72 15 27 H 0.14 1.68 8.06 -52.49 -0.42 1.26 15 28 H 0.40 3.47 8.98 45.56 0.41 3.88 15 29 H 0.10 2.35 8.06 -52.48 -0.42 1.93 15 LS Contribution 260.47 15.07 3.93 3.93 Total: -1.00 -28.75 260.47 -6.31 -35.06 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: -1.61 Total: 14.93 kcal Atomic # 6 Polarization: -14.44 SS G_CDS: -3.34 Total: -17.79 kcal Atomic # 7 Polarization: -31.87 SS G_CDS: 0.58 Total: -31.28 kcal Atomic # 8 Polarization: -17.33 SS G_CDS: -0.84 Total: -18.16 kcal Atomic # 14 Polarization: 18.35 SS G_CDS: -5.03 Total: 13.32 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -28.75 -6.31 -35.06 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313432316.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.410 kcal (2) G-P(sol) polarization free energy of solvation -28.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds