Wall clock time and date at job start Mon Mar 30 2020 03:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86803 * 120.00183 * 2 1 4 4 H 1.48505 * 109.46817 * 275.41012 * 3 2 1 5 5 H 1.48500 * 109.47215 * 35.40898 * 3 2 1 6 6 H 1.48500 * 109.47010 * 155.41187 * 3 2 1 7 7 C 1.39936 * 119.99897 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99612 * 341.73252 * 7 2 1 9 9 C 1.41402 * 120.00278 * 161.73592 * 7 2 1 10 10 C 1.40785 * 120.20580 * 330.19404 * 9 7 2 11 11 C 1.37643 * 119.88399 * 180.02562 * 10 9 7 12 12 C 1.38537 * 120.31667 * 359.72171 * 11 10 9 13 13 C 1.39247 * 120.43160 * 0.55569 * 12 11 10 14 14 N 1.39964 * 119.94393 * 179.72080 * 13 12 11 15 15 C 1.47081 * 125.56116 * 359.72795 * 14 13 12 16 16 C 1.54096 * 103.90898 * 180.02562 * 15 14 13 17 17 O 1.45696 * 104.00694 * 359.92358 * 16 15 14 18 18 C 1.33782 * 109.47953 * 0.02562 * 17 16 15 19 19 O 1.21508 * 123.07648 * 180.02562 * 18 17 16 20 20 C 1.38272 * 120.10308 * 359.44427 * 13 12 11 21 21 H 0.97006 * 119.99664 * 0.02562 * 1 2 3 22 22 H 1.07997 * 120.05735 * 359.97438 * 10 9 7 23 23 H 1.07993 * 119.84207 * 180.02562 * 11 10 9 24 24 H 1.08006 * 119.78470 * 180.29967 * 12 11 10 25 25 H 1.08998 * 110.57014 * 61.43177 * 15 14 13 26 26 H 1.09004 * 110.56842 * 298.72081 * 15 14 13 27 27 H 1.08999 * 110.51745 * 118.55731 * 16 15 14 28 28 H 1.08999 * 110.51937 * 241.29029 * 16 15 14 29 29 H 1.07997 * 120.15715 * 180.25433 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3755 2.1124 -1.3939 5 1 1.5016 2.6170 0.8112 6 1 3.5924 1.4098 0.5826 7 6 2.0079 -1.2119 0.0005 8 1 1.5087 -2.1235 0.2941 9 6 3.3685 -1.2430 -0.3832 10 6 3.8629 -0.3112 -1.3156 11 6 5.1884 -0.3479 -1.6849 12 6 6.0405 -1.2940 -1.1390 13 6 5.5642 -2.2255 -0.2200 14 7 6.4328 -3.1806 0.3207 15 6 7.8624 -3.3145 0.0019 16 6 8.3240 -4.5060 0.8632 17 8 7.1194 -4.9155 1.5731 18 6 6.1009 -4.1247 1.2167 19 8 4.9774 -4.2488 1.6626 20 6 4.2359 -2.2047 0.1635 21 1 -0.4850 0.8401 -0.0004 22 1 3.2032 0.4304 -1.7410 23 1 5.5671 0.3675 -2.3998 24 1 7.0801 -1.3119 -1.4312 25 1 8.4032 -2.4099 0.2800 26 1 7.9999 -3.5310 -1.0576 27 1 8.6891 -5.3155 0.2312 28 1 9.0946 -4.1925 1.5674 29 1 3.8665 -2.9241 0.8792 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313464467.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:26 Heat of formation + Delta-G solvation = -41.610451 kcal Electronic energy + Delta-G solvation = -15919.265923 eV Core-core repulsion = 13193.767552 eV Total energy + Delta-G solvation = -2725.498371 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.50626 -38.03669 -36.89312 -35.21452 -33.38051 -30.42117 -30.29864 -28.43914 -25.40234 -23.74557 -22.89773 -20.43396 -20.38035 -18.10428 -17.26655 -16.75648 -16.19550 -15.80835 -14.66451 -14.63060 -14.18086 -14.03751 -13.64873 -13.39234 -12.74132 -12.60881 -12.43034 -11.97444 -11.61373 -11.23153 -10.94711 -10.69752 -10.63124 -10.12213 -9.90506 -9.58699 -9.28689 -9.10961 -7.72160 -7.12055 -6.94732 -4.49812 2.35494 2.58120 2.64960 3.09651 3.19144 3.23191 3.34655 3.56732 3.99417 4.12061 4.45723 4.62844 4.79855 5.14658 5.36607 5.40344 5.45777 5.99038 6.11923 6.35348 6.55772 6.76667 6.81564 7.13753 7.26886 7.48854 7.56011 7.81915 7.91282 8.06768 8.36682 8.40937 8.65312 8.80329 10.07287 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.040597 B = 0.007683 C = 0.006786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.540155 B = 3643.431961 C = 4125.248490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.804 5.804 2 C 0.084 3.916 3 Si 0.914 3.086 4 H -0.270 1.270 5 H -0.291 1.291 6 H -0.244 1.244 7 C -0.439 4.439 8 H 0.093 0.907 9 C 0.110 3.890 10 C -0.253 4.253 11 C -0.056 4.056 12 C -0.276 4.276 13 C 0.197 3.803 14 N -0.563 5.563 15 C 0.062 3.938 16 C 0.042 3.958 17 O -0.331 6.331 18 C 0.635 3.365 19 O -0.496 6.496 20 C -0.233 4.233 21 H 0.286 0.714 22 H 0.102 0.898 23 H 0.099 0.901 24 H 0.096 0.904 25 H 0.094 0.906 26 H 0.095 0.905 27 H 0.105 0.895 28 H 0.105 0.895 29 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.189 -2.296 -1.406 15.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.135 4.135 3 Si 0.741 3.259 4 H -0.196 1.196 5 H -0.219 1.219 6 H -0.167 1.167 7 C -0.467 4.467 8 H 0.111 0.889 9 C 0.106 3.894 10 C -0.273 4.273 11 C -0.075 4.075 12 C -0.297 4.297 13 C 0.107 3.893 14 N -0.300 5.300 15 C -0.061 4.061 16 C -0.033 4.033 17 O -0.242 6.242 18 C 0.389 3.611 19 O -0.379 6.379 20 C -0.254 4.254 21 H 0.096 0.904 22 H 0.120 0.880 23 H 0.117 0.883 24 H 0.114 0.886 25 H 0.112 0.888 26 H 0.113 0.887 27 H 0.123 0.877 28 H 0.123 0.877 29 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 14.339 -2.519 -0.955 14.590 hybrid contribution 0.476 0.850 -0.215 0.998 sum 14.815 -1.669 -1.170 14.955 Atomic orbital electron populations 1.69702 1.08149 1.30327 1.34614 1.26188 0.94727 1.01814 0.90799 0.86269 0.81334 0.79544 0.78763 1.19592 1.21856 1.16724 1.19526 0.92954 0.96294 1.37917 0.88893 1.17571 0.92771 0.90008 0.89031 1.21057 0.95741 1.05507 1.04968 1.20339 0.93421 0.96305 0.97452 1.19854 0.98708 1.03064 1.08091 1.17274 0.88679 0.88314 0.95078 1.45502 1.09697 1.31958 1.42875 1.22801 0.82301 0.99471 1.01545 1.24273 0.86556 0.97095 0.95401 1.87284 1.19728 1.53718 1.63458 1.18595 0.84575 0.78639 0.79296 1.91003 1.16500 1.72060 1.58327 1.21466 0.90630 1.06485 1.06833 0.90379 0.88037 0.88272 0.88586 0.88787 0.88725 0.87713 0.87721 0.84490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.79 13.93 55.55 0.77 -21.02 15 2 C 0.08 2.25 5.40 -17.34 -0.09 2.16 15 3 Si 0.91 21.03 24.52 -169.99 -4.17 16.86 15 4 H -0.27 -5.93 6.71 56.52 0.38 -5.55 15 5 H -0.29 -6.44 7.11 56.52 0.40 -6.04 15 6 H -0.24 -5.77 6.86 56.52 0.39 -5.38 15 7 C -0.44 -12.34 9.57 -37.74 -0.36 -12.70 15 8 H 0.09 2.78 8.06 -52.49 -0.42 2.35 15 9 C 0.11 2.90 5.10 -106.85 -0.55 2.36 15 10 C -0.25 -6.11 7.17 -38.84 -0.28 -6.39 15 11 C -0.06 -1.19 10.02 -39.69 -0.40 -1.58 15 12 C -0.28 -5.50 9.50 -39.10 -0.37 -5.87 15 13 C 0.20 4.29 6.63 -83.76 -0.56 3.73 15 14 N -0.56 -10.20 3.17 -118.23 -0.38 -10.57 15 15 C 0.06 0.70 6.46 -3.15 -0.02 0.68 15 16 C 0.04 0.38 8.23 37.73 0.31 0.69 15 17 O -0.33 -5.11 11.09 -37.86 -0.42 -5.53 15 18 C 0.63 12.42 8.78 53.85 0.47 12.90 15 19 O -0.50 -11.86 14.77 -19.11 -0.28 -12.14 15 20 C -0.23 -5.91 9.06 -38.69 -0.35 -6.27 15 21 H 0.29 6.97 8.30 -40.82 -0.34 6.63 15 22 H 0.10 2.43 4.73 -52.49 -0.25 2.18 15 23 H 0.10 1.76 8.06 -52.49 -0.42 1.34 15 24 H 0.10 1.57 7.29 -52.48 -0.38 1.19 15 25 H 0.09 0.89 8.14 -51.93 -0.42 0.47 15 26 H 0.09 0.89 8.14 -51.93 -0.42 0.47 15 27 H 0.10 0.65 8.14 -51.93 -0.42 0.23 15 28 H 0.10 0.65 8.14 -51.93 -0.42 0.23 15 29 H 0.14 3.70 5.24 -52.49 -0.28 3.43 15 LS Contribution 248.31 15.07 3.74 3.74 Total: -1.00 -31.90 248.31 -5.53 -37.43 By element: Atomic # 1 Polarization: 4.15 SS G_CDS: -2.61 Total: 1.53 kcal Atomic # 6 Polarization: -8.12 SS G_CDS: -2.19 Total: -10.31 kcal Atomic # 7 Polarization: -31.99 SS G_CDS: 0.40 Total: -31.59 kcal Atomic # 8 Polarization: -16.97 SS G_CDS: -0.70 Total: -17.67 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.17 Total: 16.86 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -31.90 -5.53 -37.43 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313464467.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.180 kcal (2) G-P(sol) polarization free energy of solvation -31.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds