Wall clock time and date at job start Mon Mar 30 2020 03:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86803 * 120.00183 * 2 1 4 4 H 1.48505 * 109.46817 * 275.41012 * 3 2 1 5 5 H 1.48500 * 109.47215 * 35.40898 * 3 2 1 6 6 H 1.48500 * 109.47010 * 155.41187 * 3 2 1 7 7 C 1.39936 * 119.99897 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99612 * 341.73252 * 7 2 1 9 9 C 1.41402 * 120.00278 * 161.73592 * 7 2 1 10 10 C 1.40785 * 120.20580 * 330.19404 * 9 7 2 11 11 C 1.37643 * 119.88399 * 180.02562 * 10 9 7 12 12 C 1.38537 * 120.31667 * 359.72171 * 11 10 9 13 13 C 1.39247 * 120.43160 * 0.55569 * 12 11 10 14 14 N 1.39964 * 119.94393 * 179.72080 * 13 12 11 15 15 C 1.47081 * 125.56116 * 359.72795 * 14 13 12 16 16 C 1.54096 * 103.90898 * 180.02562 * 15 14 13 17 17 O 1.45696 * 104.00694 * 359.92358 * 16 15 14 18 18 C 1.33782 * 109.47953 * 0.02562 * 17 16 15 19 19 O 1.21508 * 123.07648 * 180.02562 * 18 17 16 20 20 C 1.38272 * 120.10308 * 359.44427 * 13 12 11 21 21 H 0.97006 * 119.99664 * 0.02562 * 1 2 3 22 22 H 1.07997 * 120.05735 * 359.97438 * 10 9 7 23 23 H 1.07993 * 119.84207 * 180.02562 * 11 10 9 24 24 H 1.08006 * 119.78470 * 180.29967 * 12 11 10 25 25 H 1.08998 * 110.57014 * 61.43177 * 15 14 13 26 26 H 1.09004 * 110.56842 * 298.72081 * 15 14 13 27 27 H 1.08999 * 110.51745 * 118.55731 * 16 15 14 28 28 H 1.08999 * 110.51937 * 241.29029 * 16 15 14 29 29 H 1.07997 * 120.15715 * 180.25433 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3755 2.1124 -1.3939 5 1 1.5016 2.6170 0.8112 6 1 3.5924 1.4098 0.5826 7 6 2.0079 -1.2119 0.0005 8 1 1.5087 -2.1235 0.2941 9 6 3.3685 -1.2430 -0.3832 10 6 3.8629 -0.3112 -1.3156 11 6 5.1884 -0.3479 -1.6849 12 6 6.0405 -1.2940 -1.1390 13 6 5.5642 -2.2255 -0.2200 14 7 6.4328 -3.1806 0.3207 15 6 7.8624 -3.3145 0.0019 16 6 8.3240 -4.5060 0.8632 17 8 7.1194 -4.9155 1.5731 18 6 6.1009 -4.1247 1.2167 19 8 4.9774 -4.2488 1.6626 20 6 4.2359 -2.2047 0.1635 21 1 -0.4850 0.8401 -0.0004 22 1 3.2032 0.4304 -1.7410 23 1 5.5671 0.3675 -2.3998 24 1 7.0801 -1.3119 -1.4312 25 1 8.4032 -2.4099 0.2800 26 1 7.9999 -3.5310 -1.0576 27 1 8.6891 -5.3155 0.2312 28 1 9.0946 -4.1925 1.5674 29 1 3.8665 -2.9241 0.8792 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313464467.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:26 Heat of formation + Delta-G solvation = -64.588864 kcal Electronic energy + Delta-G solvation = -15920.262341 eV Core-core repulsion = 13193.767552 eV Total energy + Delta-G solvation = -2726.494789 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.81066 -39.72279 -38.44835 -36.73792 -35.23405 -32.23349 -31.62966 -29.84743 -27.27122 -24.92646 -24.44840 -22.12450 -21.99454 -19.75569 -18.41285 -18.24904 -17.74760 -17.57123 -16.47828 -16.18211 -15.48185 -15.13687 -15.12095 -14.80685 -14.58641 -14.29186 -13.83103 -13.47828 -13.12913 -12.93510 -12.76525 -12.43673 -11.98497 -11.76970 -11.68438 -11.21613 -11.02046 -10.84726 -9.58363 -8.92015 -8.79560 -6.56368 0.61026 0.77109 1.25502 1.31096 1.43095 1.49236 1.66880 2.13698 2.53166 2.59812 3.31217 3.47478 3.69248 3.98181 4.36312 4.43882 4.52968 4.58411 4.69424 4.73596 4.86127 5.01661 5.04249 5.34147 5.60568 5.70934 5.77613 5.92984 6.19087 6.29789 6.45542 6.73515 6.74431 6.90756 8.17951 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.040597 B = 0.007683 C = 0.006786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.540155 B = 3643.431961 C = 4125.248490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.044 3.956 3 Si 0.977 3.023 4 H -0.245 1.245 5 H -0.278 1.278 6 H -0.253 1.253 7 C -0.491 4.491 8 H 0.040 0.960 9 C 0.092 3.908 10 C -0.264 4.264 11 C -0.052 4.052 12 C -0.241 4.241 13 C 0.201 3.799 14 N -0.567 5.567 15 C 0.053 3.947 16 C 0.039 3.961 17 O -0.338 6.338 18 C 0.630 3.370 19 O -0.559 6.559 20 C -0.270 4.270 21 H 0.295 0.705 22 H 0.103 0.897 23 H 0.149 0.851 24 H 0.153 0.847 25 H 0.123 0.877 26 H 0.123 0.877 27 H 0.141 0.859 28 H 0.141 0.859 29 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.475 -0.790 -3.288 20.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C -0.170 4.170 3 Si 0.798 3.202 4 H -0.169 1.169 5 H -0.204 1.204 6 H -0.177 1.177 7 C -0.520 4.520 8 H 0.059 0.941 9 C 0.089 3.911 10 C -0.284 4.284 11 C -0.071 4.071 12 C -0.262 4.262 13 C 0.109 3.891 14 N -0.304 5.304 15 C -0.067 4.067 16 C -0.034 4.034 17 O -0.249 6.249 18 C 0.386 3.614 19 O -0.446 6.446 20 C -0.292 4.292 21 H 0.106 0.894 22 H 0.121 0.879 23 H 0.167 0.833 24 H 0.171 0.829 25 H 0.141 0.859 26 H 0.141 0.859 27 H 0.159 0.841 28 H 0.159 0.841 29 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 19.698 -1.044 -2.855 19.931 hybrid contribution -0.812 0.168 0.334 0.894 sum 18.886 -0.875 -2.522 19.074 Atomic orbital electron populations 1.69737 1.09444 1.31675 1.36922 1.26980 0.95454 1.04580 0.89974 0.85346 0.79341 0.75401 0.80082 1.16914 1.20448 1.17670 1.19459 0.94810 0.95541 1.42192 0.94123 1.17676 0.92052 0.91436 0.89933 1.21199 0.97686 1.04967 1.04550 1.20910 0.91871 0.96934 0.97351 1.20486 1.01100 1.00020 1.04624 1.17367 0.87830 0.89121 0.94823 1.45595 1.12289 1.30477 1.42024 1.23400 0.77889 1.01682 1.03776 1.24917 0.84527 0.97762 0.96221 1.87265 1.20837 1.52760 1.63989 1.18852 0.84587 0.78966 0.79011 1.90969 1.19597 1.73701 1.60352 1.21404 0.93189 1.06737 1.07870 0.89421 0.87900 0.83333 0.82913 0.85909 0.85859 0.84085 0.84074 0.87837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -49.20 13.93 21.82 0.30 -48.89 15 2 C 0.04 2.50 5.40 85.25 0.46 2.96 15 3 Si 0.98 43.80 24.52 68.60 1.68 45.48 15 4 H -0.24 -9.89 6.71 99.48 0.67 -9.22 15 5 H -0.28 -11.69 7.11 99.48 0.71 -10.98 15 6 H -0.25 -11.56 6.86 99.48 0.68 -10.88 15 7 C -0.49 -30.17 9.57 23.46 0.22 -29.94 15 8 H 0.04 2.77 8.06 -2.91 -0.02 2.75 15 9 C 0.09 5.08 5.10 -21.31 -0.11 4.97 15 10 C -0.26 -12.39 7.17 22.75 0.16 -12.23 15 11 C -0.05 -1.93 10.02 22.20 0.22 -1.71 15 12 C -0.24 -8.26 9.50 22.58 0.21 -8.04 15 13 C 0.20 8.35 6.63 38.09 0.25 8.60 15 14 N -0.57 -19.05 3.17 -759.34 -2.41 -21.46 15 15 C 0.05 0.87 6.46 86.64 0.56 1.43 15 16 C 0.04 0.50 8.23 72.35 0.60 1.09 15 17 O -0.34 -9.75 11.09 -47.41 -0.53 -10.27 15 18 C 0.63 24.61 8.78 129.86 1.14 25.75 15 19 O -0.56 -28.52 14.77 19.66 0.29 -28.23 15 20 C -0.27 -14.37 9.06 22.85 0.21 -14.16 15 21 H 0.30 15.12 8.30 -92.70 -0.77 14.36 15 22 H 0.10 4.74 4.73 -2.91 -0.01 4.73 15 23 H 0.15 4.13 8.06 -2.91 -0.02 4.11 15 24 H 0.15 3.59 7.29 -2.91 -0.02 3.57 15 25 H 0.12 1.39 8.14 -2.39 -0.02 1.37 15 26 H 0.12 1.39 8.14 -2.38 -0.02 1.37 15 27 H 0.14 0.85 8.14 -2.39 -0.02 0.83 15 28 H 0.14 0.85 8.14 -2.39 -0.02 0.83 15 29 H 0.10 6.17 5.24 -2.91 -0.02 6.16 15 Total: -1.00 -80.06 248.31 4.39 -75.67 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: 1.11 Total: 8.98 kcal Atomic # 6 Polarization: -25.22 SS G_CDS: 3.93 Total: -21.29 kcal Atomic # 7 Polarization: -68.25 SS G_CDS: -2.10 Total: -70.35 kcal Atomic # 8 Polarization: -38.26 SS G_CDS: -0.24 Total: -38.50 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 1.68 Total: 45.48 kcal Total: -80.06 4.39 -75.67 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313464467.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.084 kcal (2) G-P(sol) polarization free energy of solvation -80.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds