Wall clock time and date at job start Mon Mar 30 2020 03:24:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42898 * 109.47287 * 2 1 4 4 C 1.35459 * 117.00416 * 179.97438 * 3 2 1 5 5 C 1.39888 * 120.24084 * 89.99569 * 4 3 2 6 6 C 1.43196 * 120.05642 * 359.95825 * 5 4 3 7 7 N 3.93758 * 108.60939 * 292.83839 * 2 1 3 8 8 C 1.39778 * 119.88667 * 180.23603 * 5 4 3 9 9 C 1.38918 * 120.38151 * 359.48667 * 8 5 4 10 10 O 1.35961 * 119.75708 * 180.26003 * 9 8 5 11 11 C 1.38103 * 120.49165 * 0.51709 * 9 8 5 12 12 C 1.40650 * 120.10103 * 359.74454 * 11 9 8 13 13 C 1.41139 * 120.19189 * 180.02562 * 12 11 9 14 14 H 1.07999 * 120.00086 * 154.19930 * 13 12 11 15 15 C 1.39924 * 119.99789 * 334.19916 * 13 12 11 16 16 N 1.30859 * 120.00169 * 343.40133 * 15 13 12 17 17 Si 1.86810 * 119.99919 * 163.40384 * 15 13 12 18 18 H 1.48502 * 109.46720 * 89.99872 * 17 15 13 19 19 H 1.48500 * 109.46962 * 210.00041 * 17 15 13 20 20 H 1.48498 * 109.46906 * 330.00047 * 17 15 13 21 21 H 1.09001 * 109.46800 * 299.99785 * 1 2 3 22 22 H 1.08998 * 109.46985 * 60.00101 * 1 2 3 23 23 H 1.09004 * 109.46666 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47174 * 239.99549 * 2 1 3 25 25 H 1.09005 * 109.47186 * 119.99598 * 2 1 3 26 26 H 1.08002 * 119.81300 * 179.74702 * 8 5 4 27 27 H 0.96704 * 113.99513 * 270.25960 * 10 9 8 28 28 H 1.07994 * 119.95281 * 179.76243 * 11 9 8 29 29 H 0.97005 * 120.00591 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3493 1.5248 0.0005 5 6 4.0483 1.6169 -1.2077 6 6 3.3455 1.5227 -2.4518 7 7 2.7866 1.4484 -3.4392 8 6 5.4346 1.7951 -1.1985 9 6 6.1225 1.8922 0.0045 10 8 7.4704 2.0708 -0.0014 11 6 5.4483 1.8034 1.2064 12 6 4.0540 1.6186 1.2212 13 6 3.3629 1.5281 2.4484 14 1 2.3192 1.8005 2.5018 15 6 4.0301 1.0856 3.5960 16 7 5.1719 0.4556 3.4871 17 14 3.2908 1.3940 5.2836 18 1 2.4140 0.2546 5.6556 19 1 4.3799 1.5278 6.2842 20 1 2.4907 2.6446 5.2525 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.8934 -0.5139 -0.8899 25 1 1.8934 -0.5138 0.8901 26 1 5.9736 1.8619 -2.1320 27 1 7.9762 1.2466 -0.0028 28 1 5.9923 1.8762 2.1365 29 1 5.6343 0.1484 4.2826 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575646295.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:32 Heat of formation + Delta-G solvation = -44.752866 kcal Electronic energy + Delta-G solvation = -15837.184942 eV Core-core repulsion = 13111.550306 eV Total energy + Delta-G solvation = -2725.634636 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.04329 -37.35815 -35.89176 -35.16050 -33.61923 -30.92651 -30.21399 -27.93468 -25.52205 -22.89538 -22.27329 -20.90591 -19.02487 -17.01482 -16.55135 -16.01257 -15.77513 -15.02339 -14.36773 -14.01558 -13.83815 -13.19100 -12.98384 -12.68049 -12.40911 -12.17448 -11.85962 -11.82339 -11.62935 -11.36212 -11.09817 -10.85947 -10.59656 -10.50013 -10.18503 -9.70857 -9.37499 -8.87628 -7.82549 -7.45304 -7.04076 -4.65471 1.82862 2.32735 2.92474 2.95931 3.02758 3.37822 3.73325 3.80368 4.26439 4.61832 4.70854 5.24176 5.37473 5.56614 5.73734 5.91744 6.05486 6.18943 6.39809 6.52075 6.55914 6.68227 6.84104 6.88928 7.15364 7.31838 7.58932 7.69029 8.05330 8.20842 8.37932 8.51011 8.52735 8.80556 9.87715 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.019257 B = 0.011412 C = 0.007484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.696422 B = 2452.943550 C = 3740.269397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.060 3.940 3 O -0.322 6.322 4 C 0.019 3.981 5 C -0.018 4.018 6 C 0.284 3.716 7 N -0.465 5.465 8 C -0.207 4.207 9 C 0.109 3.891 10 O -0.508 6.508 11 C -0.153 4.153 12 C 0.105 3.895 13 C -0.435 4.435 14 H 0.092 0.908 15 C 0.074 3.926 16 N -0.785 5.785 17 Si 0.914 3.086 18 H -0.267 1.267 19 H -0.274 1.274 20 H -0.257 1.257 21 H 0.063 0.937 22 H 0.055 0.945 23 H 0.064 0.936 24 H 0.034 0.966 25 H 0.057 0.943 26 H 0.109 0.891 27 H 0.377 0.623 28 H 0.135 0.865 29 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.360 -2.155 1.406 2.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.015 4.015 3 O -0.239 6.239 4 C -0.029 4.029 5 C -0.022 4.022 6 C -0.030 4.030 7 N -0.142 5.142 8 C -0.230 4.230 9 C 0.065 3.935 10 O -0.317 6.317 11 C -0.174 4.174 12 C 0.102 3.898 13 C -0.463 4.463 14 H 0.110 0.890 15 C -0.146 4.146 16 N -0.409 5.409 17 Si 0.738 3.262 18 H -0.192 1.192 19 H -0.199 1.199 20 H -0.181 1.181 21 H 0.082 0.918 22 H 0.074 0.926 23 H 0.083 0.917 24 H 0.053 0.947 25 H 0.076 0.924 26 H 0.127 0.873 27 H 0.231 0.769 28 H 0.152 0.848 29 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.345 -1.661 0.027 2.137 hybrid contribution 0.338 -0.673 1.130 1.358 sum -1.007 -2.333 1.157 2.792 Atomic orbital electron populations 1.21709 0.94622 1.01437 1.02594 1.22559 0.94223 0.84667 1.00058 1.85902 1.18664 1.25176 1.94140 1.18590 0.83100 1.10811 0.90410 1.15970 0.91990 1.08664 0.85544 1.26025 0.92120 0.92237 0.92571 1.81098 1.09858 1.11175 1.12061 1.20438 0.91402 1.13891 0.97222 1.18092 0.82178 1.01077 0.92146 1.84774 1.15666 1.34494 1.96748 1.21656 0.94980 1.03947 0.96785 1.17552 0.91144 0.89601 0.91542 1.19561 0.98726 1.36586 0.91412 0.89035 1.26016 0.94368 0.92207 1.02010 1.69776 1.13855 1.24625 1.32599 0.86191 0.79686 0.80363 0.79991 1.19248 1.19865 1.18056 0.91827 0.92584 0.91713 0.94734 0.92445 0.87275 0.76913 0.84756 0.90260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 10.28 37.16 0.38 -1.88 15 2 C 0.06 1.14 6.78 37.16 0.25 1.39 15 3 O -0.32 -7.16 8.77 -18.07 -0.16 -7.32 15 4 C 0.02 0.43 5.76 -37.82 -0.22 0.21 15 5 C -0.02 -0.38 5.74 -106.78 -0.61 -0.99 15 6 C 0.28 6.07 14.86 -22.44 -0.33 5.74 15 7 N -0.47 -10.08 18.54 41.88 0.78 -9.30 15 8 C -0.21 -4.28 9.68 -38.75 -0.38 -4.65 15 9 C 0.11 2.31 6.68 -39.38 -0.26 2.04 15 10 O -0.51 -9.44 13.49 -19.62 -0.26 -9.70 15 11 C -0.15 -3.55 8.59 -38.72 -0.33 -3.88 15 12 C 0.11 2.53 5.57 -106.74 -0.59 1.93 15 13 C -0.43 -10.36 8.70 -37.85 -0.33 -10.69 15 14 H 0.09 2.17 7.66 -52.49 -0.40 1.77 15 15 C 0.07 1.64 5.15 -17.34 -0.09 1.56 15 16 N -0.78 -17.83 10.96 55.55 0.61 -17.22 15 17 Si 0.91 16.95 29.59 -169.99 -5.03 11.92 15 18 H -0.27 -4.91 7.11 56.52 0.40 -4.51 15 19 H -0.27 -4.97 7.11 56.52 0.40 -4.57 15 20 H -0.26 -4.81 7.11 56.52 0.40 -4.41 15 21 H 0.06 0.96 8.14 -51.93 -0.42 0.54 15 22 H 0.06 0.86 8.14 -51.93 -0.42 0.44 15 23 H 0.06 0.83 8.14 -51.93 -0.42 0.41 15 24 H 0.03 0.65 8.14 -51.93 -0.42 0.23 15 25 H 0.06 1.12 8.14 -51.93 -0.42 0.70 15 26 H 0.11 2.04 8.06 -52.49 -0.42 1.62 15 27 H 0.38 5.17 9.06 45.56 0.41 5.59 15 28 H 0.13 3.21 6.19 -52.49 -0.32 2.89 15 29 H 0.29 5.91 8.30 -40.82 -0.34 5.57 15 LS Contribution 270.44 15.07 4.08 4.08 Total: -1.00 -26.03 270.44 -4.49 -30.52 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -1.98 Total: 6.25 kcal Atomic # 6 Polarization: -6.71 SS G_CDS: -2.51 Total: -9.22 kcal Atomic # 7 Polarization: -27.91 SS G_CDS: 1.39 Total: -26.52 kcal Atomic # 8 Polarization: -16.60 SS G_CDS: -0.42 Total: -17.02 kcal Atomic # 14 Polarization: 16.95 SS G_CDS: -5.03 Total: 11.92 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -26.03 -4.49 -30.52 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575646295.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.236 kcal (2) G-P(sol) polarization free energy of solvation -26.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds