Wall clock time and date at job start Mon Mar 30 2020 03:24:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42898 * 109.47287 * 2 1 4 4 C 1.35459 * 117.00416 * 179.97438 * 3 2 1 5 5 C 1.39888 * 120.24084 * 89.99569 * 4 3 2 6 6 C 1.43196 * 120.05642 * 359.95825 * 5 4 3 7 7 N 3.93758 * 108.60939 * 292.83839 * 2 1 3 8 8 C 1.39778 * 119.88667 * 180.23603 * 5 4 3 9 9 C 1.38918 * 120.38151 * 359.48667 * 8 5 4 10 10 O 1.35961 * 119.75708 * 180.26003 * 9 8 5 11 11 C 1.38103 * 120.49165 * 0.51709 * 9 8 5 12 12 C 1.40650 * 120.10103 * 359.74454 * 11 9 8 13 13 C 1.41139 * 120.19189 * 180.02562 * 12 11 9 14 14 H 1.07999 * 120.00086 * 154.19930 * 13 12 11 15 15 C 1.39924 * 119.99789 * 334.19916 * 13 12 11 16 16 N 1.30859 * 120.00169 * 343.40133 * 15 13 12 17 17 Si 1.86810 * 119.99919 * 163.40384 * 15 13 12 18 18 H 1.48502 * 109.46720 * 89.99872 * 17 15 13 19 19 H 1.48500 * 109.46962 * 210.00041 * 17 15 13 20 20 H 1.48498 * 109.46906 * 330.00047 * 17 15 13 21 21 H 1.09001 * 109.46800 * 299.99785 * 1 2 3 22 22 H 1.08998 * 109.46985 * 60.00101 * 1 2 3 23 23 H 1.09004 * 109.46666 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47174 * 239.99549 * 2 1 3 25 25 H 1.09005 * 109.47186 * 119.99598 * 2 1 3 26 26 H 1.08002 * 119.81300 * 179.74702 * 8 5 4 27 27 H 0.96704 * 113.99513 * 270.25960 * 10 9 8 28 28 H 1.07994 * 119.95281 * 179.76243 * 11 9 8 29 29 H 0.97005 * 120.00591 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3493 1.5248 0.0005 5 6 4.0483 1.6169 -1.2077 6 6 3.3455 1.5227 -2.4518 7 7 2.7866 1.4484 -3.4392 8 6 5.4346 1.7951 -1.1985 9 6 6.1225 1.8922 0.0045 10 8 7.4704 2.0708 -0.0014 11 6 5.4483 1.8034 1.2064 12 6 4.0540 1.6186 1.2212 13 6 3.3629 1.5281 2.4484 14 1 2.3192 1.8005 2.5018 15 6 4.0301 1.0856 3.5960 16 7 5.1719 0.4556 3.4871 17 14 3.2908 1.3940 5.2836 18 1 2.4140 0.2546 5.6556 19 1 4.3799 1.5278 6.2842 20 1 2.4907 2.6446 5.2525 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.8934 -0.5139 -0.8899 25 1 1.8934 -0.5138 0.8901 26 1 5.9736 1.8619 -2.1320 27 1 7.9762 1.2466 -0.0028 28 1 5.9923 1.8762 2.1365 29 1 5.6343 0.1484 4.2826 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575646295.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:31 Heat of formation + Delta-G solvation = -60.393990 kcal Electronic energy + Delta-G solvation = -15837.863192 eV Core-core repulsion = 13111.550306 eV Total energy + Delta-G solvation = -2726.312886 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.72926 -38.96311 -37.59382 -36.80831 -35.30013 -32.36142 -31.93960 -29.60794 -27.24301 -24.55937 -23.79604 -22.56701 -20.69434 -18.65069 -18.27304 -17.67817 -17.41811 -16.62519 -15.98787 -15.55299 -15.41228 -14.79998 -14.63923 -14.33626 -14.09357 -13.68605 -13.46439 -13.34033 -13.13501 -12.89485 -12.63059 -12.36626 -12.19437 -12.06990 -11.81034 -11.32808 -11.02454 -10.53920 -9.56985 -9.14779 -8.71101 -6.42661 0.09947 0.66146 1.42672 1.46759 1.56971 1.66457 2.08081 2.22138 2.61034 2.98362 3.00501 3.57045 3.77488 4.15069 4.35742 4.45575 4.55477 4.73239 4.81816 5.00452 5.06189 5.13698 5.19461 5.24539 5.46036 5.71360 5.84733 5.96975 6.31434 6.49070 6.64416 6.79031 6.98233 7.17914 8.23018 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.019257 B = 0.011412 C = 0.007484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.696422 B = 2452.943550 C = 3740.269397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.056 3.944 3 O -0.337 6.337 4 C 0.006 3.994 5 C -0.022 4.022 6 C 0.291 3.709 7 N -0.469 5.469 8 C -0.199 4.199 9 C 0.118 3.882 10 O -0.509 6.509 11 C -0.171 4.171 12 C 0.084 3.916 13 C -0.463 4.463 14 H 0.082 0.918 15 C 0.042 3.958 16 N -0.807 5.807 17 Si 0.978 3.022 18 H -0.262 1.262 19 H -0.265 1.265 20 H -0.261 1.261 21 H 0.064 0.936 22 H 0.056 0.944 23 H 0.094 0.906 24 H 0.033 0.967 25 H 0.046 0.954 26 H 0.133 0.867 27 H 0.402 0.598 28 H 0.122 0.878 29 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.362 -2.444 1.476 2.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.018 4.018 3 O -0.254 6.254 4 C -0.041 4.041 5 C -0.026 4.026 6 C -0.022 4.022 7 N -0.146 5.146 8 C -0.221 4.221 9 C 0.074 3.926 10 O -0.321 6.321 11 C -0.192 4.192 12 C 0.080 3.920 13 C -0.491 4.491 14 H 0.100 0.900 15 C -0.175 4.175 16 N -0.431 5.431 17 Si 0.799 3.201 18 H -0.186 1.186 19 H -0.189 1.189 20 H -0.185 1.185 21 H 0.083 0.917 22 H 0.075 0.925 23 H 0.113 0.887 24 H 0.052 0.948 25 H 0.064 0.936 26 H 0.151 0.849 27 H 0.259 0.741 28 H 0.140 0.860 29 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -1.327 -1.969 0.079 2.376 hybrid contribution 0.403 -0.609 1.026 1.259 sum -0.924 -2.578 1.105 2.953 Atomic orbital electron populations 1.21713 0.91738 1.03470 1.02656 1.22737 0.96510 0.83173 0.99410 1.85859 1.18383 1.27015 1.94170 1.18745 0.83549 1.11163 0.90691 1.16034 0.92520 1.08838 0.85250 1.25896 0.91950 0.92046 0.92342 1.81100 1.09886 1.11367 1.12221 1.20666 0.91014 1.12409 0.98011 1.18048 0.83232 0.99731 0.91595 1.84707 1.14436 1.36327 1.96596 1.21619 0.94875 1.05520 0.97169 1.17810 0.91830 0.90201 0.92139 1.19650 0.98612 1.38319 0.92509 0.90008 1.26684 0.94659 0.91454 1.04749 1.69792 1.14658 1.24769 1.33907 0.85236 0.79039 0.79943 0.75882 1.18622 1.18877 1.18538 0.91694 0.92531 0.88689 0.94838 0.93584 0.84866 0.74119 0.85986 0.89421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.09 10.28 71.98 0.74 -3.35 15 2 C 0.06 2.13 6.78 71.98 0.49 2.62 15 3 O -0.34 -15.10 8.77 -87.57 -0.77 -15.86 15 4 C 0.01 0.29 5.76 23.41 0.13 0.42 15 5 C -0.02 -0.95 5.74 -21.26 -0.12 -1.07 15 6 C 0.29 12.12 14.86 88.32 1.31 13.43 15 7 N -0.47 -19.67 18.54 19.02 0.35 -19.32 15 8 C -0.20 -7.90 9.68 22.81 0.22 -7.68 15 9 C 0.12 4.88 6.68 22.40 0.15 5.03 15 10 O -0.51 -17.88 13.49 -93.11 -1.26 -19.14 15 11 C -0.17 -7.98 8.59 22.83 0.20 -7.78 15 12 C 0.08 4.08 5.57 -21.24 -0.12 3.96 15 13 C -0.46 -22.52 8.70 23.39 0.20 -22.32 15 14 H 0.08 4.00 7.66 -2.91 -0.02 3.98 15 15 C 0.04 1.89 5.15 85.25 0.44 2.33 15 16 N -0.81 -36.79 10.96 21.82 0.24 -36.55 15 17 Si 0.98 34.48 29.59 68.60 2.03 36.51 15 18 H -0.26 -8.91 7.11 99.48 0.71 -8.21 15 19 H -0.26 -8.85 7.11 99.48 0.71 -8.14 15 20 H -0.26 -9.32 7.11 99.48 0.71 -8.61 15 21 H 0.06 1.89 8.14 -2.39 -0.02 1.87 15 22 H 0.06 1.65 8.14 -2.39 -0.02 1.63 15 23 H 0.09 2.21 8.14 -2.38 -0.02 2.19 15 24 H 0.03 1.25 8.14 -2.39 -0.02 1.23 15 25 H 0.05 1.82 8.14 -2.38 -0.02 1.80 15 26 H 0.13 4.62 8.06 -2.91 -0.02 4.59 15 27 H 0.40 10.04 9.06 -74.05 -0.67 9.37 15 28 H 0.12 5.93 6.19 -2.91 -0.02 5.91 15 29 H 0.29 12.07 8.30 -92.70 -0.77 11.30 15 Total: -1.00 -54.61 270.44 4.76 -49.85 By element: Atomic # 1 Polarization: 18.39 SS G_CDS: 0.52 Total: 18.91 kcal Atomic # 6 Polarization: -18.05 SS G_CDS: 3.64 Total: -14.41 kcal Atomic # 7 Polarization: -56.46 SS G_CDS: 0.59 Total: -55.87 kcal Atomic # 8 Polarization: -32.98 SS G_CDS: -2.02 Total: -35.00 kcal Atomic # 14 Polarization: 34.48 SS G_CDS: 2.03 Total: 36.51 kcal Total: -54.61 4.76 -49.85 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575646295.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.542 kcal (2) G-P(sol) polarization free energy of solvation -54.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds