Wall clock time and date at job start Mon Mar 30 2020 03:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42904 * 109.46758 * 2 1 4 4 C 1.35611 * 116.99790 * 180.02562 * 3 2 1 5 5 C 1.39061 * 120.07296 * 89.99975 * 4 3 2 6 6 O 1.36017 * 119.86770 * 359.97418 * 5 4 3 7 7 C 1.38260 * 120.25643 * 180.25244 * 5 4 3 8 8 C 1.40227 * 120.38728 * 359.45158 * 7 5 4 9 9 C 1.43196 * 119.93343 * 180.27554 * 8 7 5 10 10 N 7.47487 * 162.64619 * 359.24688 * 2 1 3 11 11 C 1.38989 * 120.13232 * 0.54865 * 8 7 5 12 12 C 1.40487 * 119.74294 * 359.72978 * 11 8 7 13 13 C 1.41247 * 120.18735 * 180.02562 * 12 11 8 14 14 H 1.08000 * 119.99711 * 150.00437 * 13 12 11 15 15 C 1.39900 * 119.99854 * 329.99815 * 13 12 11 16 16 N 1.30881 * 119.99728 * 161.83763 * 15 13 12 17 17 Si 1.86803 * 120.00226 * 341.84064 * 15 13 12 18 18 H 1.48500 * 109.46829 * 95.40396 * 17 15 13 19 19 H 1.48499 * 109.46989 * 215.40366 * 17 15 13 20 20 H 1.48497 * 109.47008 * 335.40183 * 17 15 13 21 21 H 1.08996 * 109.47254 * 299.99767 * 1 2 3 22 22 H 1.08991 * 109.47029 * 60.00145 * 1 2 3 23 23 H 1.09005 * 109.46799 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47254 * 240.00233 * 2 1 3 25 25 H 1.09004 * 109.47234 * 119.99713 * 2 1 3 26 26 H 0.96702 * 113.99840 * 90.00105 * 6 5 4 27 27 H 1.08000 * 119.80186 * 179.70366 * 7 5 4 28 28 H 1.07997 * 120.12502 * 179.75263 * 11 8 7 29 29 H 0.96994 * 119.99885 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3507 1.5251 -0.0005 5 6 4.0410 1.6166 -1.2042 6 8 3.3652 1.5269 -2.3812 7 6 5.4124 1.7925 -1.2092 8 6 6.1192 1.8920 -0.0022 9 6 7.5386 2.0800 -0.0187 10 7 8.6647 2.2293 -0.0293 11 6 5.4455 1.8027 1.2102 12 6 4.0528 1.6181 1.2218 13 6 3.3587 1.5266 2.4485 14 1 2.3345 1.8626 2.5157 15 6 3.9978 1.0007 3.5764 16 7 3.5134 1.2314 4.7701 17 14 5.5427 -0.0308 3.3786 18 1 6.7391 0.8317 3.5513 19 1 5.5549 -1.1054 4.4034 20 1 5.5619 -0.6386 2.0238 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 3.0537 2.3768 -2.7216 27 1 5.9418 1.8578 -2.1483 28 1 5.9905 1.8753 2.1398 29 1 3.9568 0.8671 5.5521 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575647365.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:03 Heat of formation + Delta-G solvation = -42.313289 kcal Electronic energy + Delta-G solvation = -15897.884655 eV Core-core repulsion = 13172.355807 eV Total energy + Delta-G solvation = -2725.528848 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.30440 -36.94176 -36.52107 -35.42428 -33.65014 -31.24743 -30.31462 -28.50541 -25.47695 -22.96307 -21.92210 -21.63973 -18.90343 -17.14025 -16.93535 -16.40240 -15.84710 -14.98220 -14.46690 -14.13783 -13.75694 -13.55923 -13.25440 -12.93931 -12.53181 -12.34103 -12.16138 -11.92699 -11.70314 -11.29083 -11.28872 -10.81888 -10.68250 -10.45589 -10.14932 -9.97139 -9.53546 -8.71930 -7.94806 -7.71423 -7.22971 -4.76277 1.50942 2.17566 2.89491 3.01082 3.10373 3.17021 3.42600 3.74075 4.22018 4.46999 4.58421 5.01612 5.14278 5.60404 5.75866 5.82572 5.98547 6.03109 6.13485 6.39331 6.47448 6.53686 6.59519 6.75969 6.99406 7.09190 7.22754 7.44926 7.97739 8.00012 8.11820 8.21981 8.46331 8.73594 9.77304 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.016496 B = 0.014227 C = 0.008253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.987313 B = 1967.621043 C = 3391.932815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.062 3.938 3 O -0.318 6.318 4 C -0.010 4.010 5 C 0.125 3.875 6 O -0.501 6.501 7 C -0.215 4.215 8 C 0.011 3.989 9 C 0.275 3.725 10 N -0.456 5.456 11 C -0.181 4.181 12 C 0.079 3.921 13 C -0.415 4.415 14 H 0.105 0.895 15 C 0.084 3.916 16 N -0.785 5.785 17 Si 0.896 3.104 18 H -0.265 1.265 19 H -0.282 1.282 20 H -0.239 1.239 21 H 0.061 0.939 22 H 0.056 0.944 23 H 0.063 0.937 24 H 0.041 0.959 25 H 0.051 0.949 26 H 0.382 0.618 27 H 0.115 0.885 28 H 0.115 0.885 29 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.050 -1.858 -5.561 6.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.012 4.012 3 O -0.234 6.234 4 C -0.056 4.056 5 C 0.081 3.919 6 O -0.310 6.310 7 C -0.237 4.237 8 C 0.007 3.993 9 C -0.039 4.039 10 N -0.132 5.132 11 C -0.203 4.203 12 C 0.075 3.925 13 C -0.442 4.442 14 H 0.123 0.877 15 C -0.138 4.138 16 N -0.407 5.407 17 Si 0.721 3.279 18 H -0.190 1.190 19 H -0.208 1.208 20 H -0.162 1.162 21 H 0.081 0.919 22 H 0.075 0.925 23 H 0.082 0.918 24 H 0.060 0.940 25 H 0.070 0.930 26 H 0.236 0.764 27 H 0.133 0.867 28 H 0.133 0.867 29 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -1.398 -2.116 -5.200 5.785 hybrid contribution 0.296 -0.181 0.120 0.368 sum -1.101 -2.298 -5.080 5.683 Atomic orbital electron populations 1.21698 0.94632 1.01394 1.02564 1.22527 0.94153 0.84513 1.00043 1.85875 1.18082 1.25365 1.94118 1.18943 0.83820 1.12032 0.90851 1.18299 0.89355 1.00285 0.83981 1.84726 1.74814 1.34727 1.36745 1.20370 0.93025 1.14613 0.95737 1.15617 0.83286 1.05672 0.94718 1.26148 0.93087 0.92488 0.92210 1.81105 1.12372 1.10711 1.09052 1.21088 0.94898 1.09245 0.95096 1.17679 0.90371 0.91366 0.93084 1.19458 1.01576 1.32928 0.90239 0.87722 1.26232 0.98274 0.95019 0.94303 1.69685 1.38354 1.33351 0.99346 0.86521 0.80737 0.80057 0.80591 1.19042 1.20835 1.16239 0.91943 0.92471 0.91792 0.94041 0.93029 0.76372 0.86705 0.86716 0.89841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 10.28 37.16 0.38 -1.74 15 2 C 0.06 1.13 6.78 37.16 0.25 1.38 15 3 O -0.32 -6.67 9.15 -33.41 -0.31 -6.97 15 4 C -0.01 -0.22 5.77 -38.13 -0.22 -0.44 15 5 C 0.13 2.46 6.70 -39.27 -0.26 2.20 15 6 O -0.50 -8.55 13.27 -34.67 -0.46 -9.01 15 7 C -0.22 -4.09 9.67 -38.83 -0.38 -4.47 15 8 C 0.01 0.22 5.73 -106.95 -0.61 -0.39 15 9 C 0.27 5.48 15.31 -22.48 -0.34 5.14 15 10 N -0.46 -9.38 18.54 41.83 0.78 -8.60 15 11 C -0.18 -3.98 6.85 -38.46 -0.26 -4.24 15 12 C 0.08 1.82 5.11 -106.76 -0.55 1.28 15 13 C -0.42 -10.17 9.18 -37.82 -0.35 -10.52 15 14 H 0.10 2.75 7.89 -52.49 -0.41 2.33 15 15 C 0.08 2.00 5.40 -17.34 -0.09 1.90 15 16 N -0.79 -19.14 13.93 55.55 0.77 -18.37 15 17 Si 0.90 19.02 24.52 -169.99 -4.17 14.86 15 18 H -0.26 -5.57 6.71 56.52 0.38 -5.19 15 19 H -0.28 -5.76 7.11 56.52 0.40 -5.36 15 20 H -0.24 -5.15 6.86 56.52 0.39 -4.77 15 21 H 0.06 0.93 8.14 -51.93 -0.42 0.51 15 22 H 0.06 0.78 8.14 -51.93 -0.42 0.35 15 23 H 0.06 0.77 8.14 -51.93 -0.42 0.35 15 24 H 0.04 0.73 8.14 -51.93 -0.42 0.31 15 25 H 0.05 0.99 8.14 -51.93 -0.42 0.56 15 26 H 0.38 4.73 9.06 45.56 0.41 5.14 15 27 H 0.11 1.95 8.06 -52.49 -0.42 1.53 15 28 H 0.12 2.53 4.74 -52.49 -0.25 2.28 15 29 H 0.29 6.40 8.30 -40.82 -0.34 6.06 15 LS Contribution 265.63 15.07 4.00 4.00 Total: -1.00 -26.10 265.63 -3.77 -29.86 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -1.96 Total: 4.12 kcal Atomic # 6 Polarization: -7.47 SS G_CDS: -2.43 Total: -9.90 kcal Atomic # 7 Polarization: -28.52 SS G_CDS: 1.55 Total: -26.97 kcal Atomic # 8 Polarization: -15.21 SS G_CDS: -0.77 Total: -15.98 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -4.17 Total: 14.86 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -26.10 -3.77 -29.86 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575647365.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.449 kcal (2) G-P(sol) polarization free energy of solvation -26.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds