Wall clock time and date at job start Mon Mar 30 2020 03:25:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42898 * 109.46966 * 2 1 4 4 C 1.35972 * 116.99614 * 180.02562 * 3 2 1 5 5 C 1.37753 * 119.87604 * 359.97438 * 4 3 2 6 6 C 1.40893 * 120.10555 * 180.02562 * 5 4 3 7 7 C 1.41261 * 120.06884 * 180.02562 * 6 5 4 8 8 H 1.07997 * 120.00323 * 24.69372 * 7 6 5 9 9 C 1.39856 * 120.00124 * 204.68853 * 7 6 5 10 10 N 1.30902 * 119.99537 * 17.99893 * 9 7 6 11 11 Si 1.86798 * 120.00329 * 197.98954 * 9 7 6 12 12 H 1.48504 * 109.46809 * 90.00378 * 11 9 7 13 13 H 1.48498 * 109.47172 * 210.00593 * 11 9 7 14 14 H 1.48499 * 109.47216 * 330.00470 * 11 9 7 15 15 C 1.40526 * 119.86103 * 0.02562 * 6 5 4 16 16 C 1.39036 * 119.74508 * 0.02562 * 15 6 5 17 17 C 1.43205 * 120.05158 * 180.02562 * 16 15 6 18 18 N 7.16072 * 131.23944 * 359.97438 * 2 1 3 19 19 C 1.39694 * 119.87057 * 180.27478 * 4 3 2 20 20 O 1.35551 * 119.93258 * 359.97438 * 19 4 3 21 21 H 1.09006 * 109.47464 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47541 * 300.00625 * 1 2 3 23 23 H 1.09002 * 109.46989 * 60.00545 * 1 2 3 24 24 H 1.08995 * 109.47106 * 239.99482 * 2 1 3 25 25 H 1.08998 * 109.46525 * 119.99294 * 2 1 3 26 26 H 1.07999 * 119.94357 * 0.03099 * 5 4 3 27 27 H 0.96999 * 119.99967 * 179.97438 * 10 9 7 28 28 H 1.07997 * 120.12533 * 180.02562 * 15 6 5 29 29 H 0.96707 * 114.00325 * 270.28277 * 20 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3543 1.5254 -0.0005 5 6 4.1910 0.4311 -0.0005 6 6 5.5885 0.6100 -0.0005 7 6 6.4458 -0.5127 -0.0011 8 1 6.0982 -1.4574 -0.3922 9 6 7.7449 -0.4008 0.5048 10 7 8.0591 0.6019 1.2854 11 14 9.0314 -1.6823 0.0668 12 1 9.7433 -1.2669 -1.1686 13 1 10.0052 -1.8072 1.1810 14 1 8.3687 -2.9916 -0.1603 15 6 6.1278 1.9077 0.0000 16 6 5.2777 3.0079 0.0010 17 6 5.8201 4.3333 0.0010 18 7 6.2504 5.3846 -0.0024 19 6 3.8854 2.8174 0.0052 20 8 3.0560 3.8896 0.0108 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 1.8933 -0.5139 -0.8899 25 1 1.8932 -0.5137 0.8901 26 1 3.7750 -0.5656 -0.0006 27 1 8.9600 0.6794 1.6366 28 1 7.1983 2.0498 -0.0005 29 1 2.8113 4.2022 -0.8710 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575648957.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:05 Heat of formation + Delta-G solvation = -61.014768 kcal Electronic energy + Delta-G solvation = -15567.161080 eV Core-core repulsion = 12840.821275 eV Total energy + Delta-G solvation = -2726.339805 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.95095 -38.90868 -37.60695 -37.25171 -35.05072 -32.55318 -31.74435 -29.98834 -26.98799 -25.13870 -23.19311 -22.92179 -20.41055 -19.08473 -18.11050 -17.43497 -17.26000 -16.89886 -16.50594 -16.03626 -14.95009 -14.88224 -14.54474 -14.18926 -13.85005 -13.79601 -13.57792 -13.36911 -13.26718 -12.86547 -12.69706 -12.44385 -12.10224 -12.04534 -11.68522 -11.46455 -11.23672 -10.92545 -9.53051 -8.86226 -8.74742 -6.43188 0.12294 0.85815 1.44172 1.49674 1.57841 1.65714 2.09009 2.20255 2.43261 2.69141 3.21146 3.47337 3.67646 4.18213 4.26898 4.48238 4.62947 4.71037 4.82987 4.94740 5.04753 5.07910 5.21643 5.29296 5.34345 5.67654 5.77858 5.98834 6.34778 6.50015 6.56979 6.74490 6.80698 7.18599 8.21742 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.019419 B = 0.009312 C = 0.006431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.526443 B = 3006.282213 C = 4353.113959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.045 3.955 3 O -0.327 6.327 4 C 0.136 3.864 5 C -0.279 4.279 6 C 0.107 3.893 7 C -0.470 4.470 8 H 0.095 0.905 9 C 0.038 3.962 10 N -0.814 5.814 11 Si 0.984 3.016 12 H -0.263 1.263 13 H -0.273 1.273 14 H -0.251 1.251 15 C -0.139 4.139 16 C -0.018 4.018 17 C 0.295 3.705 18 N -0.473 5.473 19 C -0.027 4.027 20 O -0.493 6.493 21 H 0.101 0.899 22 H 0.060 0.940 23 H 0.065 0.935 24 H 0.066 0.934 25 H 0.058 0.942 26 H 0.129 0.871 27 H 0.293 0.707 28 H 0.118 0.882 29 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.779 -6.145 -3.482 9.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.030 4.030 3 O -0.242 6.242 4 C 0.091 3.909 5 C -0.300 4.300 6 C 0.104 3.896 7 C -0.498 4.498 8 H 0.113 0.887 9 C -0.180 4.180 10 N -0.438 5.438 11 Si 0.805 3.195 12 H -0.188 1.188 13 H -0.198 1.198 14 H -0.174 1.174 15 C -0.162 4.162 16 C -0.022 4.022 17 C -0.019 4.019 18 N -0.150 5.150 19 C -0.075 4.075 20 O -0.301 6.301 21 H 0.119 0.881 22 H 0.079 0.921 23 H 0.084 0.916 24 H 0.084 0.916 25 H 0.076 0.924 26 H 0.147 0.853 27 H 0.104 0.896 28 H 0.136 0.864 29 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -6.057 -4.330 -2.710 7.924 hybrid contribution 0.646 -0.757 -0.409 1.076 sum -5.412 -5.087 -3.119 8.056 Atomic orbital electron populations 1.21771 0.90972 1.04053 1.03098 1.22986 0.96928 0.81402 1.01699 1.86006 1.18553 1.30594 1.89032 1.18810 0.82424 0.92763 0.96928 1.21226 0.93355 0.96988 1.18413 1.17543 0.91608 0.92625 0.87848 1.19902 0.96955 0.97627 1.35304 0.88683 1.26842 1.01128 0.98419 0.91580 1.69872 1.22382 1.30116 1.21474 0.85139 0.76922 0.78623 0.78814 1.18785 1.19761 1.17394 1.21270 0.98614 0.90722 1.05587 1.16064 0.92156 0.85467 1.08508 1.25850 0.91621 0.92498 0.91910 1.81030 1.10358 1.12097 1.11472 1.17005 0.85996 0.84326 1.20207 1.84770 1.66000 1.45897 1.33451 0.88056 0.92120 0.91577 0.91622 0.92403 0.85314 0.89559 0.86395 0.76728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 10.28 71.98 0.74 -2.15 15 2 C 0.04 1.25 5.45 71.98 0.39 1.64 15 3 O -0.33 -12.14 9.91 -79.16 -0.78 -12.93 15 4 C 0.14 5.76 6.69 22.51 0.15 5.91 15 5 C -0.28 -12.00 8.75 22.81 0.20 -11.80 15 6 C 0.11 5.10 5.57 -21.33 -0.12 4.98 15 7 C -0.47 -21.90 9.03 23.40 0.21 -21.69 15 8 H 0.10 4.12 7.91 -2.91 -0.02 4.09 15 9 C 0.04 1.68 5.13 85.22 0.44 2.12 15 10 N -0.81 -38.93 10.97 21.81 0.24 -38.69 15 11 Si 0.98 33.86 29.60 68.60 2.03 35.89 15 12 H -0.26 -8.93 7.11 99.48 0.71 -8.22 15 13 H -0.27 -9.18 7.11 99.48 0.71 -8.47 15 14 H -0.25 -8.19 7.11 99.48 0.71 -7.48 15 15 C -0.14 -6.77 8.38 23.02 0.19 -6.58 15 16 C -0.02 -0.81 5.74 -21.28 -0.12 -0.93 15 17 C 0.29 13.33 14.85 88.33 1.31 14.64 15 18 N -0.47 -21.50 18.54 19.00 0.35 -21.15 15 19 C -0.03 -1.18 6.75 23.18 0.16 -1.02 15 20 O -0.49 -19.73 12.68 -74.50 -0.94 -20.68 15 21 H 0.10 1.47 8.14 -2.38 -0.02 1.45 15 22 H 0.06 1.27 8.14 -2.39 -0.02 1.25 15 23 H 0.07 1.30 8.14 -2.39 -0.02 1.28 15 24 H 0.07 1.72 7.65 -2.39 -0.02 1.70 15 25 H 0.06 1.62 7.65 -2.39 -0.02 1.60 15 26 H 0.13 4.95 6.24 -2.91 -0.02 4.93 15 27 H 0.29 12.78 8.30 -92.71 -0.77 12.01 15 28 H 0.12 6.00 6.16 -2.91 -0.02 5.98 15 29 H 0.38 11.68 9.06 -74.05 -0.67 11.01 15 Total: -1.00 -56.25 267.01 4.97 -51.28 By element: Atomic # 1 Polarization: 20.62 SS G_CDS: 0.53 Total: 21.14 kcal Atomic # 6 Polarization: -18.42 SS G_CDS: 3.55 Total: -14.87 kcal Atomic # 7 Polarization: -60.42 SS G_CDS: 0.59 Total: -59.83 kcal Atomic # 8 Polarization: -31.88 SS G_CDS: -1.73 Total: -33.60 kcal Atomic # 14 Polarization: 33.86 SS G_CDS: 2.03 Total: 35.89 kcal Total: -56.25 4.97 -51.28 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575648957.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.738 kcal (2) G-P(sol) polarization free energy of solvation -56.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds