Wall clock time and date at job start Mon Mar 30 2020 03:24:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42896 * 109.47146 * 2 1 4 4 C 1.35515 * 117.00048 * 179.97438 * 3 2 1 5 5 C 1.38739 * 119.85790 * 0.02562 * 4 3 2 6 6 C 1.38152 * 120.29952 * 179.97438 * 5 4 3 7 7 O 1.35534 * 119.99986 * 180.02562 * 6 5 4 8 8 C 1.41628 * 120.00429 * 359.97438 * 6 5 4 9 9 C 1.41104 * 120.14015 * 180.02562 * 8 6 5 10 10 H 1.07996 * 119.99944 * 334.81921 * 9 8 6 11 11 C 1.39854 * 119.99887 * 154.82207 * 9 8 6 12 12 N 1.30930 * 119.99705 * 342.26724 * 11 9 8 13 13 Si 1.86801 * 119.99909 * 162.27167 * 11 9 8 14 14 H 1.48497 * 109.47328 * 94.64116 * 13 11 9 15 15 H 1.48498 * 109.46756 * 214.63930 * 13 11 9 16 16 H 1.48495 * 109.46951 * 334.64096 * 13 11 9 17 17 C 1.40367 * 119.71946 * 0.02562 * 8 6 5 18 18 C 1.39024 * 119.70199 * 359.97438 * 17 8 6 19 19 C 1.43207 * 120.00207 * 180.02562 * 18 17 8 20 20 N 4.92365 * 99.18377 * 359.97438 * 2 1 3 21 21 H 1.08990 * 109.47265 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.47122 * 299.99900 * 1 2 3 23 23 H 1.09004 * 109.46942 * 59.99609 * 1 2 3 24 24 H 1.08998 * 109.47122 * 240.00100 * 2 1 3 25 25 H 1.08997 * 109.47024 * 120.00009 * 2 1 3 26 26 H 1.08001 * 119.85138 * 0.25570 * 5 4 3 27 27 H 0.96700 * 114.00097 * 89.99707 * 7 6 5 28 28 H 0.97008 * 119.99517 * 180.02562 * 12 11 9 29 29 H 1.07998 * 120.14714 * 179.97438 * 17 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3498 1.5248 0.0005 5 6 4.1922 0.4224 0.0005 6 6 5.5632 0.5929 0.0005 7 8 6.3805 -0.4883 0.0000 8 6 6.1147 1.8974 0.0000 9 6 7.5145 2.0748 -0.0005 10 1 8.1568 1.3031 0.3974 11 6 8.0702 3.2500 -0.5163 12 7 7.3592 4.0214 -1.2997 13 14 9.8268 3.7190 -0.0875 14 1 10.7428 3.2311 -1.1497 15 1 9.9330 5.1965 0.0174 16 1 10.2010 3.1024 1.2105 17 6 5.2628 3.0130 0.0000 18 6 3.8850 2.8277 0.0000 19 6 3.0100 3.9613 -0.0005 20 7 2.3158 4.8605 -0.0022 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 3.7744 -0.5734 -0.0041 27 1 6.6176 -0.8017 -0.8836 28 1 7.7448 4.8364 -1.6577 29 1 5.6759 4.0109 0.0001 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575649696.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:26 Heat of formation + Delta-G solvation = -43.465883 kcal Electronic energy + Delta-G solvation = -15589.105760 eV Core-core repulsion = 12863.526931 eV Total energy + Delta-G solvation = -2725.578828 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.30437 -37.49337 -36.01833 -34.89699 -33.53226 -31.30331 -29.35040 -29.25431 -25.17822 -23.33926 -22.15228 -20.90777 -18.38782 -17.86490 -16.81432 -15.72056 -15.59164 -15.55511 -14.69598 -13.77572 -13.54721 -13.12877 -13.08190 -12.66797 -12.47639 -12.36391 -12.17474 -11.94805 -11.61932 -11.38581 -11.11244 -10.89402 -10.68310 -10.45580 -10.16389 -9.93867 -9.42348 -9.20525 -7.76726 -7.34018 -6.94825 -4.46738 1.90238 2.55196 2.98574 3.01815 3.08311 3.59064 3.79295 3.84429 3.89482 4.50960 4.95543 5.13694 5.19717 5.28435 5.50764 5.52447 5.71571 5.90162 6.00260 6.13942 6.44199 6.66793 6.85013 6.99461 7.02488 7.19303 7.55509 7.77416 8.12790 8.20614 8.41192 8.51631 8.62596 8.87643 9.99142 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.030829 B = 0.007852 C = 0.006393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.027691 B = 3565.323166 C = 4378.492881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.060 3.940 3 O -0.323 6.323 4 C 0.058 3.942 5 C -0.193 4.193 6 C 0.039 3.961 7 O -0.493 6.493 8 C 0.065 3.935 9 C -0.444 4.444 10 H 0.089 0.911 11 C 0.072 3.928 12 N -0.793 5.793 13 Si 0.912 3.088 14 H -0.269 1.269 15 H -0.275 1.275 16 H -0.258 1.258 17 C -0.072 4.072 18 C -0.051 4.051 19 C 0.291 3.709 20 N -0.473 5.473 21 H 0.071 0.929 22 H 0.062 0.938 23 H 0.062 0.938 24 H 0.054 0.946 25 H 0.055 0.945 26 H 0.114 0.886 27 H 0.366 0.634 28 H 0.285 0.715 29 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.654 -6.579 0.106 7.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.016 4.016 3 O -0.238 6.238 4 C 0.011 3.989 5 C -0.213 4.213 6 C -0.008 4.008 7 O -0.301 6.301 8 C 0.062 3.938 9 C -0.473 4.473 10 H 0.107 0.893 11 C -0.146 4.146 12 N -0.419 5.419 13 Si 0.736 3.264 14 H -0.195 1.195 15 H -0.200 1.200 16 H -0.182 1.182 17 C -0.094 4.094 18 C -0.055 4.055 19 C -0.022 4.022 20 N -0.150 5.150 21 H 0.090 0.910 22 H 0.081 0.919 23 H 0.081 0.919 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.131 0.869 27 H 0.220 0.780 28 H 0.096 0.904 29 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -3.903 -4.778 0.577 6.197 hybrid contribution 1.197 -0.433 -0.515 1.373 sum -2.706 -5.211 0.062 5.872 Atomic orbital electron populations 1.21749 0.93832 1.02032 1.03116 1.22542 0.94812 0.83366 1.00859 1.85874 1.20000 1.27634 1.90313 1.18072 0.81087 0.91828 1.07888 1.20773 0.93614 0.96534 1.10361 1.18310 0.86998 0.86455 1.09033 1.84673 1.67937 1.45559 1.31893 1.17696 0.94200 0.89328 0.92579 1.19433 0.91655 1.01911 1.34293 0.89281 1.25982 1.00700 0.95445 0.92494 1.69801 1.38613 1.11893 1.21565 0.86216 0.81384 0.78485 0.80291 1.19461 1.19952 1.18214 1.21256 0.88018 1.00513 0.99586 1.15377 0.91057 0.84708 1.14385 1.25829 0.92024 0.92464 0.91901 1.81023 1.10402 1.11655 1.11923 0.91021 0.91911 0.91918 0.92740 0.92674 0.86856 0.78034 0.90361 0.84343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 10.28 37.16 0.38 -1.39 15 2 C 0.06 0.88 5.45 37.16 0.20 1.08 15 3 O -0.32 -6.30 9.54 -18.24 -0.17 -6.47 15 4 C 0.06 1.23 6.71 -38.41 -0.26 0.97 15 5 C -0.19 -3.92 8.93 -39.43 -0.35 -4.27 15 6 C 0.04 0.85 6.73 -38.32 -0.26 0.59 15 7 O -0.49 -9.81 12.75 -18.30 -0.23 -10.05 15 8 C 0.07 1.56 5.58 -106.72 -0.60 0.97 15 9 C -0.44 -10.70 8.69 -37.89 -0.33 -11.03 15 10 H 0.09 2.12 7.64 -52.49 -0.40 1.72 15 11 C 0.07 1.66 5.13 -17.33 -0.09 1.57 15 12 N -0.79 -18.92 10.99 55.54 0.61 -18.31 15 13 Si 0.91 17.47 29.60 -169.99 -5.03 12.44 15 14 H -0.27 -5.09 7.11 56.52 0.40 -4.69 15 15 H -0.27 -5.21 7.11 56.52 0.40 -4.81 15 16 H -0.26 -4.96 7.11 56.52 0.40 -4.56 15 17 C -0.07 -1.71 8.37 -38.49 -0.32 -2.03 15 18 C -0.05 -1.15 5.75 -106.69 -0.61 -1.77 15 19 C 0.29 6.65 14.84 -22.47 -0.33 6.32 15 20 N -0.47 -10.98 18.54 41.84 0.78 -10.20 15 21 H 0.07 0.65 8.14 -51.93 -0.42 0.22 15 22 H 0.06 0.75 8.14 -51.93 -0.42 0.33 15 23 H 0.06 0.75 8.14 -51.93 -0.42 0.33 15 24 H 0.05 0.75 7.64 -51.93 -0.40 0.35 15 25 H 0.06 0.77 7.65 -51.93 -0.40 0.37 15 26 H 0.11 1.99 6.24 -52.49 -0.33 1.66 15 27 H 0.37 5.73 9.06 45.56 0.41 6.14 15 28 H 0.29 6.25 8.30 -40.82 -0.34 5.91 15 29 H 0.14 3.42 6.19 -52.49 -0.32 3.10 15 LS Contribution 266.33 15.07 4.01 4.01 Total: -1.00 -27.05 266.33 -4.44 -31.49 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -1.84 Total: 6.07 kcal Atomic # 6 Polarization: -6.41 SS G_CDS: -2.57 Total: -8.98 kcal Atomic # 7 Polarization: -29.90 SS G_CDS: 1.39 Total: -28.51 kcal Atomic # 8 Polarization: -16.11 SS G_CDS: -0.41 Total: -16.52 kcal Atomic # 14 Polarization: 17.47 SS G_CDS: -5.03 Total: 12.44 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -27.05 -4.44 -31.49 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575649696.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.974 kcal (2) G-P(sol) polarization free energy of solvation -27.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds