Wall clock time and date at job start Mon Mar 30 2020 03:24:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42896 * 109.47146 * 2 1 4 4 C 1.35515 * 117.00048 * 179.97438 * 3 2 1 5 5 C 1.38739 * 119.85790 * 0.02562 * 4 3 2 6 6 C 1.38152 * 120.29952 * 179.97438 * 5 4 3 7 7 O 1.35534 * 119.99986 * 180.02562 * 6 5 4 8 8 C 1.41628 * 120.00429 * 359.97438 * 6 5 4 9 9 C 1.41104 * 120.14015 * 180.02562 * 8 6 5 10 10 H 1.07996 * 119.99944 * 334.81921 * 9 8 6 11 11 C 1.39854 * 119.99887 * 154.82207 * 9 8 6 12 12 N 1.30930 * 119.99705 * 342.26724 * 11 9 8 13 13 Si 1.86801 * 119.99909 * 162.27167 * 11 9 8 14 14 H 1.48497 * 109.47328 * 94.64116 * 13 11 9 15 15 H 1.48498 * 109.46756 * 214.63930 * 13 11 9 16 16 H 1.48495 * 109.46951 * 334.64096 * 13 11 9 17 17 C 1.40367 * 119.71946 * 0.02562 * 8 6 5 18 18 C 1.39024 * 119.70199 * 359.97438 * 17 8 6 19 19 C 1.43207 * 120.00207 * 180.02562 * 18 17 8 20 20 N 4.92365 * 99.18377 * 359.97438 * 2 1 3 21 21 H 1.08990 * 109.47265 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.47122 * 299.99900 * 1 2 3 23 23 H 1.09004 * 109.46942 * 59.99609 * 1 2 3 24 24 H 1.08998 * 109.47122 * 240.00100 * 2 1 3 25 25 H 1.08997 * 109.47024 * 120.00009 * 2 1 3 26 26 H 1.08001 * 119.85138 * 0.25570 * 5 4 3 27 27 H 0.96700 * 114.00097 * 89.99707 * 7 6 5 28 28 H 0.97008 * 119.99517 * 180.02562 * 12 11 9 29 29 H 1.07998 * 120.14714 * 179.97438 * 17 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3498 1.5248 0.0005 5 6 4.1922 0.4224 0.0005 6 6 5.5632 0.5929 0.0005 7 8 6.3805 -0.4883 0.0000 8 6 6.1147 1.8974 0.0000 9 6 7.5145 2.0748 -0.0005 10 1 8.1568 1.3031 0.3974 11 6 8.0702 3.2500 -0.5163 12 7 7.3592 4.0214 -1.2997 13 14 9.8268 3.7190 -0.0875 14 1 10.7428 3.2311 -1.1497 15 1 9.9330 5.1965 0.0174 16 1 10.2010 3.1024 1.2105 17 6 5.2628 3.0130 0.0000 18 6 3.8850 2.8277 0.0000 19 6 3.0100 3.9613 -0.0005 20 7 2.3158 4.8605 -0.0022 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 3.7744 -0.5734 -0.0041 27 1 6.6176 -0.8017 -0.8836 28 1 7.7448 4.8364 -1.6577 29 1 5.6759 4.0109 0.0001 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575649696.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:26 Heat of formation + Delta-G solvation = -60.358672 kcal Electronic energy + Delta-G solvation = -15589.838286 eV Core-core repulsion = 12863.526931 eV Total energy + Delta-G solvation = -2726.311355 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.91914 -39.07371 -37.76361 -36.61710 -35.20879 -32.51951 -31.04185 -30.91201 -26.88612 -24.68455 -23.82009 -22.46266 -20.08398 -19.44509 -18.52166 -17.29826 -17.23068 -16.89012 -16.33019 -15.34955 -15.21781 -14.77116 -14.60013 -14.31281 -14.02384 -13.73248 -13.69290 -13.32362 -13.27393 -12.90624 -12.62171 -12.38074 -12.12502 -11.94233 -11.82470 -11.44371 -11.06480 -10.87252 -9.47440 -9.06477 -8.64699 -6.25250 0.14919 0.86273 1.43905 1.47689 1.58684 1.77189 2.06689 2.24236 2.49553 2.76113 3.18476 3.44820 3.84862 4.15329 4.16030 4.32081 4.47893 4.65923 4.85945 4.97426 5.00431 5.15637 5.26463 5.29531 5.32217 5.49390 5.82621 6.00996 6.41675 6.50298 6.73171 6.79925 6.87681 7.29905 8.31227 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.030829 B = 0.007852 C = 0.006393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.027691 B = 3565.323166 C = 4378.492881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.046 3.954 3 O -0.339 6.339 4 C 0.075 3.925 5 C -0.191 4.191 6 C 0.050 3.950 7 O -0.496 6.496 8 C 0.036 3.964 9 C -0.473 4.473 10 H 0.085 0.915 11 C 0.038 3.962 12 N -0.826 5.826 13 Si 0.977 3.023 14 H -0.262 1.262 15 H -0.272 1.272 16 H -0.259 1.259 17 C -0.087 4.087 18 C -0.068 4.068 19 C 0.296 3.704 20 N -0.485 5.485 21 H 0.105 0.895 22 H 0.057 0.943 23 H 0.057 0.943 24 H 0.068 0.932 25 H 0.067 0.933 26 H 0.147 0.853 27 H 0.389 0.611 28 H 0.290 0.710 29 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.020 -8.287 0.174 8.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.029 4.029 3 O -0.254 6.254 4 C 0.027 3.973 5 C -0.210 4.210 6 C 0.003 3.997 7 O -0.307 6.307 8 C 0.034 3.966 9 C -0.502 4.502 10 H 0.103 0.897 11 C -0.177 4.177 12 N -0.452 5.452 13 Si 0.799 3.201 14 H -0.187 1.187 15 H -0.197 1.197 16 H -0.183 1.183 17 C -0.109 4.109 18 C -0.072 4.072 19 C -0.017 4.017 20 N -0.163 5.163 21 H 0.124 0.876 22 H 0.077 0.923 23 H 0.076 0.924 24 H 0.087 0.913 25 H 0.085 0.915 26 H 0.165 0.835 27 H 0.246 0.754 28 H 0.100 0.900 29 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -4.286 -6.512 0.631 7.821 hybrid contribution 1.154 -0.072 -0.542 1.277 sum -3.133 -6.584 0.090 7.291 Atomic orbital electron populations 1.21788 0.91643 1.04129 1.02701 1.22992 0.96626 0.81176 1.02071 1.85887 1.18712 1.30997 1.89825 1.18159 0.82261 0.91356 1.05538 1.21000 0.92722 0.97819 1.09440 1.18476 0.87934 0.86259 1.07063 1.84586 1.67711 1.44575 1.33820 1.17981 0.94576 0.90365 0.93727 1.19549 0.91908 1.02891 1.35899 0.89687 1.26676 1.04201 0.95010 0.91861 1.69853 1.40295 1.12481 1.22604 0.85244 0.76952 0.78037 0.79910 1.18654 1.19720 1.18308 1.21056 0.88597 0.99897 1.01386 1.15463 0.90699 0.85532 1.15536 1.25927 0.91800 0.92399 0.91543 1.81005 1.10920 1.11805 1.12572 0.87641 0.92344 0.92355 0.91346 0.91451 0.83512 0.75423 0.89973 0.86158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.97 10.28 71.98 0.74 -2.23 15 2 C 0.05 1.20 5.45 71.98 0.39 1.59 15 3 O -0.34 -12.54 9.54 -88.18 -0.84 -13.38 15 4 C 0.07 3.05 6.71 23.03 0.15 3.21 15 5 C -0.19 -7.27 8.93 22.37 0.20 -7.07 15 6 C 0.05 2.11 6.73 23.09 0.16 2.26 15 7 O -0.50 -18.74 12.75 -88.38 -1.13 -19.86 15 8 C 0.04 1.76 5.58 -21.22 -0.12 1.65 15 9 C -0.47 -23.10 8.69 23.36 0.20 -22.90 15 10 H 0.09 4.07 7.64 -2.91 -0.02 4.05 15 11 C 0.04 1.75 5.13 85.22 0.44 2.19 15 12 N -0.83 -40.35 10.99 21.82 0.24 -40.11 15 13 Si 0.98 35.99 29.60 68.60 2.03 38.02 15 14 H -0.26 -9.24 7.11 99.48 0.71 -8.53 15 15 H -0.27 -9.82 7.11 99.48 0.71 -9.12 15 16 H -0.26 -9.47 7.11 99.48 0.71 -8.77 15 17 C -0.09 -4.25 8.37 22.98 0.19 -4.05 15 18 C -0.07 -3.09 5.75 -21.20 -0.12 -3.21 15 19 C 0.30 13.63 14.84 88.33 1.31 14.94 15 20 N -0.49 -22.62 18.54 19.01 0.35 -22.27 15 21 H 0.11 1.46 8.14 -2.39 -0.02 1.44 15 22 H 0.06 1.25 8.14 -2.39 -0.02 1.23 15 23 H 0.06 1.24 8.14 -2.38 -0.02 1.22 15 24 H 0.07 1.62 7.64 -2.39 -0.02 1.60 15 25 H 0.07 1.62 7.65 -2.39 -0.02 1.60 15 26 H 0.15 4.56 6.24 -2.91 -0.02 4.54 15 27 H 0.39 11.24 9.06 -74.06 -0.67 10.57 15 28 H 0.29 12.98 8.30 -92.70 -0.77 12.21 15 29 H 0.12 6.23 6.19 -2.91 -0.02 6.21 15 Total: -1.00 -57.71 266.33 4.73 -52.98 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: 0.53 Total: 18.25 kcal Atomic # 6 Polarization: -17.18 SS G_CDS: 3.55 Total: -13.63 kcal Atomic # 7 Polarization: -62.97 SS G_CDS: 0.59 Total: -62.37 kcal Atomic # 8 Polarization: -31.28 SS G_CDS: -1.97 Total: -33.24 kcal Atomic # 14 Polarization: 35.99 SS G_CDS: 2.03 Total: 38.02 kcal Total: -57.71 4.73 -52.98 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575649696.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.377 kcal (2) G-P(sol) polarization free energy of solvation -57.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds