Wall clock time and date at job start Mon Mar 30 2020 02:59:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86808 * 119.99658 * 2 1 4 4 H 1.48492 * 109.47031 * 239.99685 * 3 2 1 5 5 H 1.48494 * 109.46882 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46796 * 119.99953 * 3 2 1 7 7 C 1.37880 * 120.00393 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99957 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99678 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.46943 * 180.02562 * 9 7 2 11 11 C 1.34425 * 125.62202 * 269.97581 * 10 9 7 12 12 O 1.21559 * 124.85527 * 359.97438 * 11 10 9 13 13 C 1.47547 * 110.28954 * 180.02562 * 11 10 9 14 14 C 1.39620 * 132.34321 * 179.97438 * 13 11 10 15 15 C 1.37938 * 119.82257 * 179.97438 * 14 13 11 16 16 C 1.38384 * 120.32616 * 0.02562 * 15 14 13 17 17 C 1.38478 * 120.18355 * 359.97438 * 16 15 14 18 18 C 1.37576 * 119.95493 * 359.97438 * 17 16 15 19 19 C 1.46728 * 125.62710 * 90.00023 * 10 9 7 20 20 H 1.09002 * 110.09709 * 60.78107 * 19 10 9 21 21 O 1.42896 * 110.09940 * 299.23587 * 19 10 9 22 22 H 0.97004 * 120.00709 * 0.02562 * 1 2 3 23 23 H 1.08999 * 109.46835 * 59.99887 * 9 7 2 24 24 H 1.08996 * 109.47070 * 300.00084 * 9 7 2 25 25 H 1.07996 * 120.09001 * 359.97438 * 14 13 11 26 26 H 1.07999 * 119.83703 * 180.02562 * 15 14 13 27 27 H 1.07996 * 119.91186 * 179.97438 * 16 15 14 28 28 H 1.08005 * 120.01959 * 180.02562 * 17 16 15 29 29 H 0.96694 * 114.00457 * 180.85450 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.1028 1.6965 -1.2124 5 1 1.2840 2.7464 -0.0006 6 1 3.1027 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2032 -3.6126 0.0018 11 6 2.7124 -4.2085 -1.0903 12 8 2.4486 -3.9008 -2.2363 13 6 3.6365 -5.2901 -0.6989 14 6 4.4031 -6.1878 -1.4445 15 6 5.1954 -7.1143 -0.7990 16 6 5.2337 -7.1585 0.5836 17 6 4.4762 -6.2714 1.3298 18 6 3.6835 -5.3428 0.6959 19 6 2.7577 -4.2617 1.1951 20 1 1.9560 -4.6991 1.7902 21 8 3.4868 -3.3128 1.9762 22 1 -0.4851 0.8400 -0.0004 23 1 0.6248 -2.5570 -0.8897 24 1 0.6241 -2.5567 0.8902 25 1 4.3758 -6.1570 -2.5237 26 1 5.7887 -7.8085 -1.3755 27 1 5.8561 -7.8869 1.0820 28 1 4.5085 -6.3080 2.4088 29 1 3.8890 -3.6852 2.7728 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701688433.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:43 Heat of formation + Delta-G solvation = -32.506713 kcal Electronic energy + Delta-G solvation = -15909.048505 eV Core-core repulsion = 13183.944902 eV Total energy + Delta-G solvation = -2725.103603 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.76810 -37.72865 -36.66244 -34.28456 -32.92704 -30.99231 -30.92331 -27.36612 -25.39216 -23.95432 -21.84279 -21.53944 -19.39115 -17.48224 -16.73963 -16.54554 -16.00214 -15.57242 -14.50891 -14.47818 -14.33278 -13.90363 -13.54368 -13.23957 -12.65381 -12.33190 -12.11510 -11.90847 -11.39631 -11.16530 -10.96983 -10.62197 -10.17435 -9.99195 -9.63464 -9.22513 -8.99360 -8.87277 -8.40421 -7.98213 -6.01876 -4.04473 0.90051 1.26926 3.10999 3.37880 3.40135 3.44655 3.60081 4.07871 4.23735 4.48471 4.61825 4.78957 4.90515 4.97072 5.29704 5.33671 5.44501 5.51580 5.66965 5.90753 6.24888 6.32001 6.34599 6.78193 6.88937 7.25741 7.47894 7.71878 7.95053 8.17064 8.23132 8.80067 9.02634 9.59395 11.06879 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.039259 B = 0.007234 C = 0.006820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.047682 B = 3869.688430 C = 4104.776610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.059 3.941 3 Si 0.902 3.098 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.519 4.519 8 H 0.062 0.938 9 C 0.265 3.735 10 N -0.576 5.576 11 C 0.552 3.448 12 O -0.522 6.522 13 C -0.134 4.134 14 C -0.057 4.057 15 C -0.125 4.125 16 C -0.102 4.102 17 C -0.096 4.096 18 C -0.121 4.121 19 C 0.360 3.640 20 H 0.086 0.914 21 O -0.541 6.541 22 H 0.264 0.736 23 H 0.047 0.953 24 H 0.039 0.961 25 H 0.131 0.869 26 H 0.129 0.871 27 H 0.129 0.871 28 H 0.128 0.872 29 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.871 -14.704 5.056 17.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.142 4.142 3 Si 0.730 3.270 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.557 4.557 8 H 0.080 0.920 9 C 0.148 3.852 10 N -0.311 5.311 11 C 0.339 3.661 12 O -0.400 6.400 13 C -0.137 4.137 14 C -0.076 4.076 15 C -0.143 4.143 16 C -0.121 4.121 17 C -0.115 4.115 18 C -0.123 4.123 19 C 0.214 3.786 20 H 0.103 0.897 21 O -0.345 6.345 22 H 0.073 0.927 23 H 0.065 0.935 24 H 0.057 0.943 25 H 0.149 0.851 26 H 0.147 0.853 27 H 0.147 0.853 28 H 0.146 0.854 29 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 8.259 -13.869 4.002 16.631 hybrid contribution 0.719 0.565 0.524 1.054 sum 8.978 -13.304 4.526 16.675 Atomic orbital electron populations 1.69915 1.05967 1.27191 1.50873 1.24923 0.94908 0.99251 0.95136 0.86487 0.79434 0.82383 0.78711 1.20214 1.21240 1.20158 1.21403 0.93699 0.90164 1.50471 0.91977 1.19307 0.86098 0.81132 0.98650 1.48525 1.43529 1.35418 1.03660 1.18155 0.80443 0.82157 0.85350 1.90737 1.61788 1.67736 1.19719 1.20870 0.99929 0.98195 0.94733 1.20906 0.93560 0.92722 1.00417 1.21107 0.99435 0.99008 0.94723 1.21235 0.98423 0.98352 0.94061 1.20271 0.96496 0.94751 0.99962 1.21374 0.98160 0.97231 0.95520 1.20199 0.89750 0.83151 0.85456 0.89729 1.86783 1.71535 1.36929 1.39222 0.92656 0.93494 0.94259 0.85064 0.85276 0.85294 0.85405 0.77445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.14 13.29 55.43 0.74 -26.40 15 2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 15 3 Si 0.90 22.67 29.54 -169.99 -5.02 17.65 15 4 H -0.28 -6.97 7.11 56.52 0.40 -6.57 15 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 15 6 H -0.28 -6.80 7.11 56.52 0.40 -6.39 15 7 C -0.52 -15.39 9.39 -34.44 -0.32 -15.71 15 8 H 0.06 1.90 7.81 -52.49 -0.41 1.49 15 9 C 0.26 7.20 5.78 -5.19 -0.03 7.17 15 10 N -0.58 -13.39 2.84 -175.27 -0.50 -13.89 15 11 C 0.55 12.81 7.97 -12.62 -0.10 12.71 15 12 O -0.52 -13.92 17.71 5.31 0.09 -13.83 15 13 C -0.13 -2.41 6.26 -105.05 -0.66 -3.06 15 14 C -0.06 -0.83 10.10 -39.18 -0.40 -1.22 15 15 C -0.12 -1.37 10.02 -39.64 -0.40 -1.76 15 16 C -0.10 -1.02 10.05 -39.44 -0.40 -1.41 15 17 C -0.10 -1.08 10.03 -39.73 -0.40 -1.47 15 18 C -0.12 -1.85 6.02 -104.27 -0.63 -2.48 15 19 C 0.36 6.38 4.65 -5.01 -0.02 6.36 15 20 H 0.09 1.28 8.14 -51.93 -0.42 0.86 15 21 O -0.54 -9.63 13.54 -35.23 -0.48 -10.11 15 22 H 0.26 7.52 8.31 -40.82 -0.34 7.18 15 23 H 0.05 1.39 8.01 -51.93 -0.42 0.97 15 24 H 0.04 1.06 8.14 -51.93 -0.42 0.64 15 25 H 0.13 1.78 8.06 -52.49 -0.42 1.36 15 26 H 0.13 1.01 8.06 -52.49 -0.42 0.59 15 27 H 0.13 0.86 8.06 -52.49 -0.42 0.43 15 28 H 0.13 1.00 8.06 -52.48 -0.42 0.57 15 29 H 0.38 4.18 9.10 45.56 0.41 4.59 15 LS Contribution 265.73 15.07 4.00 4.00 Total: -1.00 -36.01 265.73 -6.69 -42.70 By element: Atomic # 1 Polarization: 1.19 SS G_CDS: -2.08 Total: -0.89 kcal Atomic # 6 Polarization: 4.21 SS G_CDS: -3.45 Total: 0.76 kcal Atomic # 7 Polarization: -40.53 SS G_CDS: 0.24 Total: -40.29 kcal Atomic # 8 Polarization: -23.55 SS G_CDS: -0.38 Total: -23.94 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.65 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -36.01 -6.69 -42.70 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701688433.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.194 kcal (2) G-P(sol) polarization free energy of solvation -36.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds