Wall clock time and date at job start Mon Mar 30 2020 02:59:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86808 * 119.99658 * 2 1 4 4 H 1.48492 * 109.47031 * 239.99685 * 3 2 1 5 5 H 1.48494 * 109.46882 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46796 * 119.99953 * 3 2 1 7 7 C 1.37880 * 120.00393 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99957 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99678 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.46943 * 180.02562 * 9 7 2 11 11 C 1.34425 * 125.62202 * 269.97581 * 10 9 7 12 12 O 1.21559 * 124.85527 * 359.97438 * 11 10 9 13 13 C 1.47547 * 110.28954 * 180.02562 * 11 10 9 14 14 C 1.39620 * 132.34321 * 179.97438 * 13 11 10 15 15 C 1.37938 * 119.82257 * 179.97438 * 14 13 11 16 16 C 1.38384 * 120.32616 * 0.02562 * 15 14 13 17 17 C 1.38478 * 120.18355 * 359.97438 * 16 15 14 18 18 C 1.37576 * 119.95493 * 359.97438 * 17 16 15 19 19 C 1.46728 * 125.62710 * 90.00023 * 10 9 7 20 20 H 1.09002 * 110.09709 * 60.78107 * 19 10 9 21 21 O 1.42896 * 110.09940 * 299.23587 * 19 10 9 22 22 H 0.97004 * 120.00709 * 0.02562 * 1 2 3 23 23 H 1.08999 * 109.46835 * 59.99887 * 9 7 2 24 24 H 1.08996 * 109.47070 * 300.00084 * 9 7 2 25 25 H 1.07996 * 120.09001 * 359.97438 * 14 13 11 26 26 H 1.07999 * 119.83703 * 180.02562 * 15 14 13 27 27 H 1.07996 * 119.91186 * 179.97438 * 16 15 14 28 28 H 1.08005 * 120.01959 * 180.02562 * 17 16 15 29 29 H 0.96694 * 114.00457 * 180.85450 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.1028 1.6965 -1.2124 5 1 1.2840 2.7464 -0.0006 6 1 3.1027 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2032 -3.6126 0.0018 11 6 2.7124 -4.2085 -1.0903 12 8 2.4486 -3.9008 -2.2363 13 6 3.6365 -5.2901 -0.6989 14 6 4.4031 -6.1878 -1.4445 15 6 5.1954 -7.1143 -0.7990 16 6 5.2337 -7.1585 0.5836 17 6 4.4762 -6.2714 1.3298 18 6 3.6835 -5.3428 0.6959 19 6 2.7577 -4.2617 1.1951 20 1 1.9560 -4.6991 1.7902 21 8 3.4868 -3.3128 1.9762 22 1 -0.4851 0.8400 -0.0004 23 1 0.6248 -2.5570 -0.8897 24 1 0.6241 -2.5567 0.8902 25 1 4.3758 -6.1570 -2.5237 26 1 5.7887 -7.8085 -1.3755 27 1 5.8561 -7.8869 1.0820 28 1 4.5085 -6.3080 2.4088 29 1 3.8890 -3.6852 2.7728 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701688433.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:43 Heat of formation + Delta-G solvation = -61.308157 kcal Electronic energy + Delta-G solvation = -15910.297429 eV Core-core repulsion = 13183.944902 eV Total energy + Delta-G solvation = -2726.352527 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.16268 -39.11037 -38.12531 -36.03903 -34.94713 -32.53510 -31.93889 -29.24730 -26.77755 -25.77741 -23.34245 -22.67809 -20.93740 -19.06597 -18.44680 -18.04621 -17.66897 -16.98621 -16.33045 -15.94535 -15.71371 -15.20777 -14.85747 -14.72253 -14.43823 -13.91316 -13.57904 -13.24492 -13.09821 -12.92314 -12.67030 -12.28432 -12.19892 -11.88307 -11.24058 -10.95466 -10.68010 -10.12000 -9.92176 -9.78308 -8.27894 -6.40810 -0.25004 0.31019 1.33660 1.38556 1.46117 1.71626 2.01739 2.36819 2.82491 3.00025 3.08604 3.30940 3.53988 3.93940 4.17567 4.19841 4.41965 4.51368 4.65228 4.80521 4.98921 4.99411 5.22626 5.36224 5.43473 5.54413 5.75577 5.91244 5.96601 6.11136 6.63292 6.95346 7.08535 7.30110 8.80248 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.039259 B = 0.007234 C = 0.006820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.047682 B = 3869.688430 C = 4104.776610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.009 3.991 3 Si 0.971 3.029 4 H -0.279 1.279 5 H -0.271 1.271 6 H -0.263 1.263 7 C -0.539 4.539 8 H 0.045 0.955 9 C 0.279 3.721 10 N -0.595 5.595 11 C 0.534 3.466 12 O -0.584 6.584 13 C -0.178 4.178 14 C -0.068 4.068 15 C -0.114 4.114 16 C -0.078 4.078 17 C -0.084 4.084 18 C -0.120 4.120 19 C 0.356 3.644 20 H 0.110 0.890 21 O -0.567 6.567 22 H 0.270 0.730 23 H 0.006 0.994 24 H 0.035 0.965 25 H 0.126 0.874 26 H 0.169 0.831 27 H 0.181 0.819 28 H 0.173 0.827 29 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.664 -16.662 7.305 21.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.190 4.190 3 Si 0.795 3.205 4 H -0.205 1.205 5 H -0.196 1.196 6 H -0.188 1.188 7 C -0.577 4.577 8 H 0.064 0.936 9 C 0.160 3.840 10 N -0.329 5.329 11 C 0.324 3.676 12 O -0.467 6.467 13 C -0.181 4.181 14 C -0.088 4.088 15 C -0.131 4.131 16 C -0.096 4.096 17 C -0.102 4.102 18 C -0.122 4.122 19 C 0.212 3.788 20 H 0.127 0.873 21 O -0.376 6.376 22 H 0.079 0.921 23 H 0.024 0.976 24 H 0.053 0.947 25 H 0.144 0.856 26 H 0.186 0.814 27 H 0.198 0.802 28 H 0.190 0.810 29 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 11.074 -15.870 6.314 20.356 hybrid contribution -0.093 1.036 -0.126 1.047 sum 10.981 -14.834 6.188 19.466 Atomic orbital electron populations 1.70017 1.07341 1.28478 1.50850 1.25837 0.95922 1.02944 0.94258 0.85421 0.78330 0.77889 0.78868 1.20455 1.19571 1.18782 1.21539 0.92983 0.91739 1.51488 0.93636 1.18743 0.86602 0.82353 0.96309 1.48474 1.43352 1.34601 1.06443 1.19185 0.80675 0.83236 0.84515 1.90657 1.64177 1.69941 1.21882 1.20522 1.01927 0.98990 0.96676 1.21109 0.94003 0.93171 1.00466 1.21571 0.97916 0.97766 0.95892 1.21895 0.96707 0.97509 0.93478 1.20811 0.94322 0.92781 1.02318 1.21274 0.99089 0.97852 0.93957 1.20415 0.91260 0.83167 0.83943 0.87286 1.86704 1.71936 1.38077 1.40874 0.92110 0.97642 0.94721 0.85635 0.81396 0.80198 0.80998 0.74138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.54 13.29 21.45 0.28 -57.26 15 2 C 0.01 0.57 5.46 84.66 0.46 1.03 15 3 Si 0.97 47.25 29.54 68.60 2.03 49.27 15 4 H -0.28 -13.60 7.11 99.48 0.71 -12.90 15 5 H -0.27 -12.42 7.11 99.48 0.71 -11.71 15 6 H -0.26 -12.20 7.11 99.48 0.71 -11.49 15 7 C -0.54 -33.54 9.39 25.60 0.24 -33.30 15 8 H 0.05 2.91 7.81 -2.91 -0.02 2.89 15 9 C 0.28 16.27 5.78 85.63 0.50 16.77 15 10 N -0.60 -29.36 2.84 -927.22 -2.64 -32.00 15 11 C 0.53 26.61 7.97 86.75 0.69 27.31 15 12 O -0.58 -34.13 17.71 -3.90 -0.07 -34.20 15 13 C -0.18 -6.50 6.26 -20.14 -0.13 -6.62 15 14 C -0.07 -1.91 10.10 22.53 0.23 -1.69 15 15 C -0.11 -1.96 10.02 22.23 0.22 -1.74 15 16 C -0.08 -1.03 10.05 22.36 0.22 -0.81 15 17 C -0.08 -1.44 10.03 22.17 0.22 -1.21 15 18 C -0.12 -3.46 6.02 -19.63 -0.12 -3.58 15 19 C 0.36 12.61 4.65 85.63 0.40 13.01 15 20 H 0.11 3.22 8.14 -2.39 -0.02 3.20 15 21 O -0.57 -19.83 13.54 -148.98 -2.02 -21.85 15 22 H 0.27 15.61 8.31 -92.71 -0.77 14.84 15 23 H 0.01 0.36 8.01 -2.39 -0.02 0.34 15 24 H 0.03 2.00 8.14 -2.39 -0.02 1.98 15 25 H 0.13 3.50 8.06 -2.91 -0.02 3.48 15 26 H 0.17 1.62 8.06 -2.91 -0.02 1.60 15 27 H 0.18 0.74 8.06 -2.91 -0.02 0.72 15 28 H 0.17 1.44 8.06 -2.91 -0.02 1.42 15 29 H 0.41 8.01 9.10 -74.06 -0.67 7.33 15 Total: -1.00 -86.19 265.73 1.03 -85.16 By element: Atomic # 1 Polarization: 1.20 SS G_CDS: 0.50 Total: 1.70 kcal Atomic # 6 Polarization: 6.23 SS G_CDS: 2.94 Total: 9.17 kcal Atomic # 7 Polarization: -86.91 SS G_CDS: -2.35 Total: -89.26 kcal Atomic # 8 Polarization: -53.96 SS G_CDS: -2.09 Total: -56.05 kcal Atomic # 14 Polarization: 47.25 SS G_CDS: 2.03 Total: 49.27 kcal Total: -86.19 1.03 -85.16 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701688433.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.852 kcal (2) G-P(sol) polarization free energy of solvation -86.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds