Wall clock time and date at job start Mon Mar 30 2020 02:52:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 H 1.09000 * 109.46837 * 2 1
4 4 C 1.50693 * 109.46915 * 240.00078 * 2 1 3
5 5 H 1.08005 * 119.99854 * 239.99900 * 4 2 1
6 6 C 1.37878 * 120.00083 * 59.99957 * 4 2 1
7 7 N 1.31511 * 119.99935 * 0.02562 * 6 4 2
8 8 Si 1.86802 * 119.99899 * 180.02562 * 6 4 2
9 9 H 1.48499 * 109.47458 * 89.99770 * 8 6 4
10 10 H 1.48501 * 109.47154 * 210.00388 * 8 6 4
11 11 H 1.48500 * 109.47109 * 329.99685 * 8 6 4
12 12 N 1.46901 * 109.47021 * 120.00193 * 2 1 3
13 13 C 1.46905 * 110.99870 * 274.99736 * 12 2 1
14 14 C 1.52993 * 109.47039 * 180.02562 * 13 12 2
15 15 S 1.82846 * 110.31645 * 57.19857 * 14 13 12
16 16 C 1.83106 * 99.46813 * 217.17662 * 15 14 13
17 17 C 1.54494 * 105.03869 * 44.18508 * 16 15 14
18 18 S 1.82125 * 106.98296 * 313.67340 * 17 16 15
19 19 H 1.08996 * 109.47234 * 180.02562 * 1 2 3
20 20 H 1.09007 * 109.47106 * 300.00284 * 1 2 3
21 21 H 1.08993 * 109.47190 * 59.99909 * 1 2 3
22 22 H 0.97003 * 119.99872 * 179.97438 * 7 6 4
23 23 H 1.00901 * 111.00067 * 38.94911 * 12 2 1
24 24 H 1.09001 * 109.46798 * 300.00327 * 13 12 2
25 25 H 1.08998 * 109.46961 * 60.00043 * 13 12 2
26 26 H 1.09006 * 110.27819 * 179.30058 * 14 13 12
27 27 H 1.08994 * 110.26818 * 285.31315 * 16 15 14
28 28 H 1.08999 * 110.44357 * 163.14303 * 16 15 14
29 29 H 1.09003 * 109.96171 * 194.29210 * 17 16 15
30 30 H 1.09005 * 109.99091 * 73.06859 * 17 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0323 -0.7104 -1.2304
5 1 2.6532 -1.5885 -1.1313
6 6 1.6992 -0.2393 -2.4827
7 7 0.9435 0.8303 -2.6033
8 14 2.3212 -1.1203 -4.0079
9 1 1.3426 -2.1617 -4.4118
10 1 2.4865 -0.1414 -5.1123
11 1 3.6292 -1.7583 -3.7122
12 7 2.0197 -0.6925 1.1994
13 6 2.0825 0.2226 2.3469
14 6 2.5962 -0.5329 3.5741
15 16 4.2310 -1.2738 3.2252
16 6 4.0513 -2.8469 4.1448
17 6 2.6372 -3.3588 3.7910
18 16 1.5030 -1.9430 3.9531
19 1 -0.3633 -1.0276 0.0005
20 1 -0.3634 0.5139 0.8900
21 1 -0.3633 0.5138 -0.8899
22 1 0.7095 1.1619 -3.4844
23 1 1.4495 -1.4979 1.4100
24 1 2.7589 1.0462 2.1182
25 1 1.0871 0.6163 2.5525
26 1 2.6598 0.1376 4.4312
27 1 4.1325 -2.6688 5.2170
28 1 4.8056 -3.5647 3.8224
29 1 2.3448 -4.1506 4.4806
30 1 2.6216 -3.7327 2.7672
RHF calculation, no. of doubly occupied orbitals= 38
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000703114006.mol2 30
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:52:32
Heat of formation + Delta-G solvation = 3.759203 kcal
Electronic energy + Delta-G solvation = -12685.444663 eV
Core-core repulsion = 10540.110491 eV
Total energy + Delta-G solvation = -2145.334173 eV
No. of doubly occupied orbitals = 38
Molecular weight
(most abundant/longest-lived isotopes) = 233.060 amu
Computer time = 0.15 seconds
Orbital eigenvalues (eV)
-36.27161 -33.26223 -32.82382 -30.48697 -26.88616 -25.06011 -23.74915 -22.24645
-20.18003 -16.84227 -16.38481 -16.20825 -15.49799 -14.87456 -14.33808 -13.84021
-13.75002 -13.35528 -12.61738 -12.46668 -12.10290 -11.69121 -11.50426 -11.15790
-10.88205 -10.70862 -10.66624 -10.41225 -10.08619 -9.81666 -9.48119 -8.95754
-8.30726 -7.75247 -7.58108 -7.04801 -5.92314 -3.94530 1.31449 1.75277
1.91646 2.79734 3.36659 3.42746 3.47992 4.42414 4.49122 4.77647
4.96934 5.02856 5.21988 5.34323 5.39476 5.62612 5.71410 6.03672
6.14552 6.75453 6.92046 7.16319 7.41187 7.81064 7.95435 8.33500
8.63561 8.68546 9.13038 9.70338 11.15004
Molecular weight = 233.06amu
Principal moments of inertia in cm(-1)
A = 0.035898 B = 0.007216 C = 0.006744
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 779.795424 B = 3879.571484 C = 4150.823624
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.168 4.168
2 C 0.212 3.788
3 H 0.031 0.969
4 C -0.488 4.488
5 H 0.063 0.937
6 C 0.054 3.946
7 N -0.899 5.899
8 Si 0.896 3.104
9 H -0.283 1.283
10 H -0.289 1.289
11 H -0.274 1.274
12 N -0.670 5.670
13 C 0.082 3.918
14 C -0.007 4.007
15 S -0.203 6.203
16 C -0.094 4.094
17 C -0.080 4.080
18 S -0.261 6.261
19 H 0.028 0.972
20 H 0.003 0.997
21 H 0.088 0.912
22 H 0.258 0.742
23 H 0.334 0.666
24 H 0.081 0.919
25 H 0.040 0.960
26 H 0.116 0.884
27 H 0.092 0.908
28 H 0.120 0.880
29 H 0.112 0.888
30 H 0.106 0.894
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.307 -5.682 13.785 15.272
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.228 4.228
2 C 0.105 3.895
3 H 0.049 0.951
4 C -0.527 4.527
5 H 0.081 0.919
6 C -0.146 4.146
7 N -0.540 5.540
8 Si 0.725 3.275
9 H -0.209 1.209
10 H -0.215 1.215
11 H -0.199 1.199
12 N -0.302 5.302
13 C -0.051 4.051
14 C -0.246 4.246
15 S 0.023 5.977
16 C -0.244 4.244
17 C -0.230 4.230
18 S -0.036 6.036
19 H 0.047 0.953
20 H 0.022 0.978
21 H 0.107 0.893
22 H 0.068 0.932
23 H 0.153 0.847
24 H 0.099 0.901
25 H 0.057 0.943
26 H 0.134 0.866
27 H 0.111 0.889
28 H 0.138 0.862
29 H 0.130 0.870
30 H 0.125 0.875
Dipole moment (debyes) X Y Z Total
from point charges 3.707 -5.058 13.122 14.544
hybrid contribution -0.494 -0.695 -0.232 0.884
sum 3.213 -5.754 12.890 14.477
Atomic orbital electron populations
1.22429 1.00763 0.99241 1.00319 1.19150 0.89491 0.94351 0.86558
0.95090 1.21142 1.29825 1.12287 0.89472 0.91899 1.24945 0.95459
0.95239 0.98994 1.69887 1.37600 1.23271 1.23206 0.86524 0.79235
0.79226 0.82556 1.20929 1.21461 1.19876 1.60943 1.58464 1.08523
1.02318 1.21710 0.98736 0.95406 0.89291 1.25951 0.94341 0.99418
1.04921 1.87920 1.20209 1.20656 1.68881 1.24464 0.99027 0.97805
1.03118 1.24298 0.93579 0.98115 1.07057 1.87035 1.23223 1.01769
1.91527 0.95299 0.97754 0.89344 0.93179 0.84714 0.90081 0.94264
0.86615 0.88931 0.86164 0.86984 0.87538
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -4.14 8.94 37.16 0.33 -3.80 16
2 C 0.21 5.40 2.57 -68.87 -0.18 5.22 16
3 H 0.03 0.87 7.80 -51.93 -0.40 0.46 16
4 C -0.49 -13.71 8.84 -34.44 -0.30 -14.01 16
5 H 0.06 1.79 7.81 -52.48 -0.41 1.38 16
6 C 0.05 1.51 5.30 -17.82 -0.09 1.42 16
7 N -0.90 -26.11 11.32 55.43 0.63 -25.48 16
8 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16
9 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16
10 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16
11 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16
12 N -0.67 -14.37 5.72 -107.95 -0.62 -14.99 16
13 C 0.08 1.48 5.30 -3.82 -0.02 1.46 16
14 C -0.01 -0.11 3.94 37.15 0.15 0.04 16
15 S -0.20 -3.06 21.84 -104.32 -2.28 -5.34 16
16 C -0.09 -1.01 7.05 37.94 0.27 -0.74 16
17 C -0.08 -0.91 6.85 37.94 0.26 -0.65 16
18 S -0.26 -3.73 20.93 -104.32 -2.18 -5.91 16
19 H 0.03 0.68 8.13 -51.93 -0.42 0.26 16
20 H 0.00 0.08 7.45 -51.92 -0.39 -0.31 16
21 H 0.09 2.40 6.07 -51.93 -0.32 2.08 16
22 H 0.26 7.17 8.31 -40.82 -0.34 6.84 16
23 H 0.33 7.04 7.08 -39.29 -0.28 6.76 16
24 H 0.08 1.51 8.06 -51.93 -0.42 1.09 16
25 H 0.04 0.72 7.44 -51.93 -0.39 0.33 16
26 H 0.12 1.53 8.14 -51.93 -0.42 1.10 16
27 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16
28 H 0.12 1.09 8.14 -51.93 -0.42 0.66 16
29 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16
30 H 0.11 1.32 8.14 -51.93 -0.42 0.90 16
LS Contribution 268.32 15.07 4.04 4.04
Total: -1.00 -29.31 268.32 -9.29 -38.60
By element:
Atomic # 1 Polarization: 7.58 SS G_CDS: -4.27 Total: 3.31 kcal
Atomic # 6 Polarization: -11.47 SS G_CDS: 0.41 Total: -11.06 kcal
Atomic # 7 Polarization: -40.48 SS G_CDS: 0.01 Total: -40.47 kcal
Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal
Atomic # 16 Polarization: -6.79 SS G_CDS: -4.46 Total: -11.25 kcal
Total LS contribution 4.04 Total: 4.04 kcal
Total: -29.31 -9.29 -38.60 kcal
The number of atoms in the molecule is 30
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000703114006.mol2 30
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 42.358 kcal
(2) G-P(sol) polarization free energy of solvation -29.307 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.050 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.291 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.598 kcal
(6) G-S(sol) free energy of system = (1) + (5) 3.759 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.15 seconds