Wall clock time and date at job start Mon Mar 30 2020 02:52:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46837 * 2 1 4 4 C 1.50693 * 109.46915 * 240.00078 * 2 1 3 5 5 H 1.08005 * 119.99854 * 239.99900 * 4 2 1 6 6 C 1.37878 * 120.00083 * 59.99957 * 4 2 1 7 7 N 1.31511 * 119.99935 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99899 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47458 * 89.99770 * 8 6 4 10 10 H 1.48501 * 109.47154 * 210.00388 * 8 6 4 11 11 H 1.48500 * 109.47109 * 329.99685 * 8 6 4 12 12 N 1.46901 * 109.47021 * 120.00193 * 2 1 3 13 13 C 1.46905 * 110.99870 * 274.99736 * 12 2 1 14 14 C 1.52993 * 109.47039 * 180.02562 * 13 12 2 15 15 S 1.82846 * 110.31645 * 57.19857 * 14 13 12 16 16 C 1.83106 * 99.46813 * 217.17662 * 15 14 13 17 17 C 1.54494 * 105.03869 * 44.18508 * 16 15 14 18 18 S 1.82125 * 106.98296 * 313.67340 * 17 16 15 19 19 H 1.08996 * 109.47234 * 180.02562 * 1 2 3 20 20 H 1.09007 * 109.47106 * 300.00284 * 1 2 3 21 21 H 1.08993 * 109.47190 * 59.99909 * 1 2 3 22 22 H 0.97003 * 119.99872 * 179.97438 * 7 6 4 23 23 H 1.00901 * 111.00067 * 38.94911 * 12 2 1 24 24 H 1.09001 * 109.46798 * 300.00327 * 13 12 2 25 25 H 1.08998 * 109.46961 * 60.00043 * 13 12 2 26 26 H 1.09006 * 110.27819 * 179.30058 * 14 13 12 27 27 H 1.08994 * 110.26818 * 285.31315 * 16 15 14 28 28 H 1.08999 * 110.44357 * 163.14303 * 16 15 14 29 29 H 1.09003 * 109.96171 * 194.29210 * 17 16 15 30 30 H 1.09005 * 109.99091 * 73.06859 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2393 -2.4827 7 7 0.9435 0.8303 -2.6033 8 14 2.3212 -1.1203 -4.0079 9 1 1.3426 -2.1617 -4.4118 10 1 2.4865 -0.1414 -5.1123 11 1 3.6292 -1.7583 -3.7122 12 7 2.0197 -0.6925 1.1994 13 6 2.0825 0.2226 2.3469 14 6 2.5962 -0.5329 3.5741 15 16 4.2310 -1.2738 3.2252 16 6 4.0513 -2.8469 4.1448 17 6 2.6372 -3.3588 3.7910 18 16 1.5030 -1.9430 3.9531 19 1 -0.3633 -1.0276 0.0005 20 1 -0.3634 0.5139 0.8900 21 1 -0.3633 0.5138 -0.8899 22 1 0.7095 1.1619 -3.4844 23 1 1.4495 -1.4979 1.4100 24 1 2.7589 1.0462 2.1182 25 1 1.0871 0.6163 2.5525 26 1 2.6598 0.1376 4.4312 27 1 4.1325 -2.6688 5.2170 28 1 4.8056 -3.5647 3.8224 29 1 2.3448 -4.1506 4.4806 30 1 2.6216 -3.7327 2.7672 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703114006.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:32 Heat of formation + Delta-G solvation = 3.759203 kcal Electronic energy + Delta-G solvation = -12685.444663 eV Core-core repulsion = 10540.110491 eV Total energy + Delta-G solvation = -2145.334173 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 233.060 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -36.27161 -33.26223 -32.82382 -30.48697 -26.88616 -25.06011 -23.74915 -22.24645 -20.18003 -16.84227 -16.38481 -16.20825 -15.49799 -14.87456 -14.33808 -13.84021 -13.75002 -13.35528 -12.61738 -12.46668 -12.10290 -11.69121 -11.50426 -11.15790 -10.88205 -10.70862 -10.66624 -10.41225 -10.08619 -9.81666 -9.48119 -8.95754 -8.30726 -7.75247 -7.58108 -7.04801 -5.92314 -3.94530 1.31449 1.75277 1.91646 2.79734 3.36659 3.42746 3.47992 4.42414 4.49122 4.77647 4.96934 5.02856 5.21988 5.34323 5.39476 5.62612 5.71410 6.03672 6.14552 6.75453 6.92046 7.16319 7.41187 7.81064 7.95435 8.33500 8.63561 8.68546 9.13038 9.70338 11.15004 Molecular weight = 233.06amu Principal moments of inertia in cm(-1) A = 0.035898 B = 0.007216 C = 0.006744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.795424 B = 3879.571484 C = 4150.823624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.212 3.788 3 H 0.031 0.969 4 C -0.488 4.488 5 H 0.063 0.937 6 C 0.054 3.946 7 N -0.899 5.899 8 Si 0.896 3.104 9 H -0.283 1.283 10 H -0.289 1.289 11 H -0.274 1.274 12 N -0.670 5.670 13 C 0.082 3.918 14 C -0.007 4.007 15 S -0.203 6.203 16 C -0.094 4.094 17 C -0.080 4.080 18 S -0.261 6.261 19 H 0.028 0.972 20 H 0.003 0.997 21 H 0.088 0.912 22 H 0.258 0.742 23 H 0.334 0.666 24 H 0.081 0.919 25 H 0.040 0.960 26 H 0.116 0.884 27 H 0.092 0.908 28 H 0.120 0.880 29 H 0.112 0.888 30 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.307 -5.682 13.785 15.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.105 3.895 3 H 0.049 0.951 4 C -0.527 4.527 5 H 0.081 0.919 6 C -0.146 4.146 7 N -0.540 5.540 8 Si 0.725 3.275 9 H -0.209 1.209 10 H -0.215 1.215 11 H -0.199 1.199 12 N -0.302 5.302 13 C -0.051 4.051 14 C -0.246 4.246 15 S 0.023 5.977 16 C -0.244 4.244 17 C -0.230 4.230 18 S -0.036 6.036 19 H 0.047 0.953 20 H 0.022 0.978 21 H 0.107 0.893 22 H 0.068 0.932 23 H 0.153 0.847 24 H 0.099 0.901 25 H 0.057 0.943 26 H 0.134 0.866 27 H 0.111 0.889 28 H 0.138 0.862 29 H 0.130 0.870 30 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 3.707 -5.058 13.122 14.544 hybrid contribution -0.494 -0.695 -0.232 0.884 sum 3.213 -5.754 12.890 14.477 Atomic orbital electron populations 1.22429 1.00763 0.99241 1.00319 1.19150 0.89491 0.94351 0.86558 0.95090 1.21142 1.29825 1.12287 0.89472 0.91899 1.24945 0.95459 0.95239 0.98994 1.69887 1.37600 1.23271 1.23206 0.86524 0.79235 0.79226 0.82556 1.20929 1.21461 1.19876 1.60943 1.58464 1.08523 1.02318 1.21710 0.98736 0.95406 0.89291 1.25951 0.94341 0.99418 1.04921 1.87920 1.20209 1.20656 1.68881 1.24464 0.99027 0.97805 1.03118 1.24298 0.93579 0.98115 1.07057 1.87035 1.23223 1.01769 1.91527 0.95299 0.97754 0.89344 0.93179 0.84714 0.90081 0.94264 0.86615 0.88931 0.86164 0.86984 0.87538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.14 8.94 37.16 0.33 -3.80 16 2 C 0.21 5.40 2.57 -68.87 -0.18 5.22 16 3 H 0.03 0.87 7.80 -51.93 -0.40 0.46 16 4 C -0.49 -13.71 8.84 -34.44 -0.30 -14.01 16 5 H 0.06 1.79 7.81 -52.48 -0.41 1.38 16 6 C 0.05 1.51 5.30 -17.82 -0.09 1.42 16 7 N -0.90 -26.11 11.32 55.43 0.63 -25.48 16 8 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16 9 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 10 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 11 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 12 N -0.67 -14.37 5.72 -107.95 -0.62 -14.99 16 13 C 0.08 1.48 5.30 -3.82 -0.02 1.46 16 14 C -0.01 -0.11 3.94 37.15 0.15 0.04 16 15 S -0.20 -3.06 21.84 -104.32 -2.28 -5.34 16 16 C -0.09 -1.01 7.05 37.94 0.27 -0.74 16 17 C -0.08 -0.91 6.85 37.94 0.26 -0.65 16 18 S -0.26 -3.73 20.93 -104.32 -2.18 -5.91 16 19 H 0.03 0.68 8.13 -51.93 -0.42 0.26 16 20 H 0.00 0.08 7.45 -51.92 -0.39 -0.31 16 21 H 0.09 2.40 6.07 -51.93 -0.32 2.08 16 22 H 0.26 7.17 8.31 -40.82 -0.34 6.84 16 23 H 0.33 7.04 7.08 -39.29 -0.28 6.76 16 24 H 0.08 1.51 8.06 -51.93 -0.42 1.09 16 25 H 0.04 0.72 7.44 -51.93 -0.39 0.33 16 26 H 0.12 1.53 8.14 -51.93 -0.42 1.10 16 27 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.12 1.09 8.14 -51.93 -0.42 0.66 16 29 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.11 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 268.32 15.07 4.04 4.04 Total: -1.00 -29.31 268.32 -9.29 -38.60 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -4.27 Total: 3.31 kcal Atomic # 6 Polarization: -11.47 SS G_CDS: 0.41 Total: -11.06 kcal Atomic # 7 Polarization: -40.48 SS G_CDS: 0.01 Total: -40.47 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Atomic # 16 Polarization: -6.79 SS G_CDS: -4.46 Total: -11.25 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -29.31 -9.29 -38.60 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703114006.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.358 kcal (2) G-P(sol) polarization free energy of solvation -29.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds