Wall clock time and date at job start Mon Mar 30 2020 02:52:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46837 * 2 1 4 4 C 1.50693 * 109.46915 * 240.00078 * 2 1 3 5 5 H 1.08005 * 119.99854 * 239.99900 * 4 2 1 6 6 C 1.37878 * 120.00083 * 59.99957 * 4 2 1 7 7 N 1.31511 * 119.99935 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99899 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47458 * 89.99770 * 8 6 4 10 10 H 1.48501 * 109.47154 * 210.00388 * 8 6 4 11 11 H 1.48500 * 109.47109 * 329.99685 * 8 6 4 12 12 N 1.46901 * 109.47021 * 120.00193 * 2 1 3 13 13 C 1.46905 * 110.99870 * 274.99736 * 12 2 1 14 14 C 1.52993 * 109.47039 * 180.02562 * 13 12 2 15 15 S 1.82846 * 110.31645 * 57.19857 * 14 13 12 16 16 C 1.83106 * 99.46813 * 217.17662 * 15 14 13 17 17 C 1.54494 * 105.03869 * 44.18508 * 16 15 14 18 18 S 1.82125 * 106.98296 * 313.67340 * 17 16 15 19 19 H 1.08996 * 109.47234 * 180.02562 * 1 2 3 20 20 H 1.09007 * 109.47106 * 300.00284 * 1 2 3 21 21 H 1.08993 * 109.47190 * 59.99909 * 1 2 3 22 22 H 0.97003 * 119.99872 * 179.97438 * 7 6 4 23 23 H 1.00901 * 111.00067 * 38.94911 * 12 2 1 24 24 H 1.09001 * 109.46798 * 300.00327 * 13 12 2 25 25 H 1.08998 * 109.46961 * 60.00043 * 13 12 2 26 26 H 1.09006 * 110.27819 * 179.30058 * 14 13 12 27 27 H 1.08994 * 110.26818 * 285.31315 * 16 15 14 28 28 H 1.08999 * 110.44357 * 163.14303 * 16 15 14 29 29 H 1.09003 * 109.96171 * 194.29210 * 17 16 15 30 30 H 1.09005 * 109.99091 * 73.06859 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2393 -2.4827 7 7 0.9435 0.8303 -2.6033 8 14 2.3212 -1.1203 -4.0079 9 1 1.3426 -2.1617 -4.4118 10 1 2.4865 -0.1414 -5.1123 11 1 3.6292 -1.7583 -3.7122 12 7 2.0197 -0.6925 1.1994 13 6 2.0825 0.2226 2.3469 14 6 2.5962 -0.5329 3.5741 15 16 4.2310 -1.2738 3.2252 16 6 4.0513 -2.8469 4.1448 17 6 2.6372 -3.3588 3.7910 18 16 1.5030 -1.9430 3.9531 19 1 -0.3633 -1.0276 0.0005 20 1 -0.3634 0.5139 0.8900 21 1 -0.3633 0.5138 -0.8899 22 1 0.7095 1.1619 -3.4844 23 1 1.4495 -1.4979 1.4100 24 1 2.7589 1.0462 2.1182 25 1 1.0871 0.6163 2.5525 26 1 2.6598 0.1376 4.4312 27 1 4.1325 -2.6688 5.2170 28 1 4.8056 -3.5647 3.8224 29 1 2.3448 -4.1506 4.4806 30 1 2.6216 -3.7327 2.7672 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703114006.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:32 Heat of formation + Delta-G solvation = -14.361257 kcal Electronic energy + Delta-G solvation = -12686.230425 eV Core-core repulsion = 10540.110491 eV Total energy + Delta-G solvation = -2146.119935 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 233.060 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.05430 -34.95342 -33.98427 -32.26114 -28.60634 -27.20369 -24.64057 -23.72856 -22.15836 -18.48762 -17.78660 -17.56917 -16.90666 -16.46226 -15.91889 -15.43992 -14.91272 -14.68937 -14.28742 -13.89833 -13.48972 -13.31403 -13.05828 -12.83064 -12.66157 -12.46154 -12.21204 -12.11717 -11.83877 -11.70972 -11.03723 -10.58642 -10.46489 -9.06685 -8.80307 -8.58320 -8.07066 -6.17328 0.24534 0.64250 0.89110 1.43762 1.44481 1.55784 1.77471 2.46003 3.21338 3.52106 3.54525 3.72882 3.99891 4.22610 4.44174 4.51593 4.55747 4.61467 4.75685 4.76910 4.90701 5.11754 5.41663 5.71508 5.83382 6.29342 6.66534 6.84988 6.98111 7.52259 8.98731 Molecular weight = 233.06amu Principal moments of inertia in cm(-1) A = 0.035898 B = 0.007216 C = 0.006744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.795424 B = 3879.571484 C = 4150.823624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.218 3.782 3 H 0.000 1.000 4 C -0.508 4.508 5 H 0.054 0.946 6 C 0.007 3.993 7 N -0.925 5.925 8 Si 0.960 3.040 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.271 1.271 12 N -0.668 5.668 13 C 0.083 3.917 14 C 0.005 3.995 15 S -0.266 6.266 16 C -0.071 4.071 17 C -0.071 4.071 18 S -0.286 6.286 19 H 0.030 0.970 20 H 0.022 0.978 21 H 0.062 0.938 22 H 0.260 0.740 23 H 0.336 0.664 24 H 0.069 0.931 25 H 0.038 0.962 26 H 0.135 0.865 27 H 0.116 0.884 28 H 0.143 0.857 29 H 0.147 0.853 30 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.759 -7.356 14.747 16.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.109 3.891 3 H 0.018 0.982 4 C -0.546 4.546 5 H 0.072 0.928 6 C -0.191 4.191 7 N -0.565 5.565 8 Si 0.786 3.214 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.195 1.195 12 N -0.300 5.300 13 C -0.050 4.050 14 C -0.234 4.234 15 S -0.041 6.041 16 C -0.221 4.221 17 C -0.222 4.222 18 S -0.061 6.061 19 H 0.049 0.951 20 H 0.041 0.959 21 H 0.080 0.920 22 H 0.069 0.931 23 H 0.156 0.844 24 H 0.087 0.913 25 H 0.056 0.944 26 H 0.153 0.847 27 H 0.134 0.866 28 H 0.161 0.839 29 H 0.165 0.835 30 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 4.159 -6.741 14.105 16.177 hybrid contribution -0.623 -0.216 -0.467 0.808 sum 3.537 -6.957 13.638 15.713 Atomic orbital electron populations 1.22231 1.00168 0.99116 0.99871 1.18904 0.89813 0.92655 0.87735 0.98248 1.21407 1.30036 1.12284 0.90900 0.92772 1.25713 0.95576 0.95911 1.01864 1.70013 1.38300 1.24325 1.23878 0.85528 0.78789 0.78218 0.78898 1.20088 1.21061 1.19549 1.60791 1.58041 1.08862 1.02353 1.21665 0.98679 0.95059 0.89567 1.25749 0.94017 0.99991 1.03598 1.88103 1.20814 1.24328 1.70807 1.24560 0.99096 0.94817 1.03631 1.24403 0.93057 0.97226 1.07478 1.87116 1.24772 1.02979 1.91183 0.95094 0.95920 0.91957 0.93093 0.84406 0.91254 0.94361 0.84725 0.86608 0.83875 0.83483 0.88631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.66 8.94 71.98 0.64 -7.01 16 2 C 0.22 11.28 2.57 44.17 0.11 11.39 16 3 H 0.00 -0.02 7.80 -2.39 -0.02 -0.04 16 4 C -0.51 -28.80 8.84 25.60 0.23 -28.58 16 5 H 0.05 3.10 7.81 -2.91 -0.02 3.08 16 6 C 0.01 0.40 5.30 84.66 0.45 0.85 16 7 N -0.92 -54.31 11.32 21.45 0.24 -54.06 16 8 Si 0.96 44.83 29.54 68.60 2.03 46.86 16 9 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 10 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 11 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 12 N -0.67 -28.79 5.72 -495.45 -2.83 -31.62 16 13 C 0.08 3.02 5.30 86.30 0.46 3.47 16 14 C 0.01 0.16 3.94 71.98 0.28 0.44 16 15 S -0.27 -7.71 21.84 -49.98 -1.09 -8.81 16 16 C -0.07 -1.29 7.05 72.49 0.51 -0.78 16 17 C -0.07 -1.40 6.85 72.49 0.50 -0.90 16 18 S -0.29 -7.60 20.93 -49.98 -1.05 -8.65 16 19 H 0.03 1.47 8.13 -2.39 -0.02 1.45 16 20 H 0.02 0.99 7.45 -2.38 -0.02 0.97 16 21 H 0.06 3.43 6.07 -2.39 -0.01 3.41 16 22 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 23 H 0.34 14.09 7.08 -89.69 -0.64 13.45 16 24 H 0.07 2.66 8.06 -2.39 -0.02 2.64 16 25 H 0.04 1.40 7.44 -2.39 -0.02 1.38 16 26 H 0.13 3.36 8.14 -2.38 -0.02 3.34 16 27 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.14 2.01 8.14 -2.39 -0.02 1.99 16 29 H 0.15 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.10 2.13 8.14 -2.38 -0.02 2.11 16 Total: -1.00 -63.09 268.32 0.97 -62.12 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: 0.49 Total: 15.28 kcal Atomic # 6 Polarization: -24.30 SS G_CDS: 3.18 Total: -21.12 kcal Atomic # 7 Polarization: -83.10 SS G_CDS: -2.59 Total: -85.69 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Atomic # 16 Polarization: -15.32 SS G_CDS: -2.14 Total: -17.46 kcal Total: -63.09 0.97 -62.12 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703114006.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.761 kcal (2) G-P(sol) polarization free energy of solvation -63.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds