Wall clock time and date at job start Mon Mar 30 2020 02:52:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.47448 * 2 1 4 4 C 1.50709 * 109.46867 * 119.99825 * 2 1 3 5 5 H 1.07994 * 119.99530 * 119.99753 * 4 2 1 6 6 C 1.37875 * 119.99870 * 299.99858 * 4 2 1 7 7 N 1.31513 * 120.00371 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99482 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.47532 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46774 * 120.00267 * 8 6 4 11 11 H 1.48504 * 109.46963 * 239.99844 * 8 6 4 12 12 N 1.46901 * 109.47398 * 239.99693 * 2 1 3 13 13 C 1.46904 * 110.99514 * 84.99973 * 12 2 1 14 14 C 1.53002 * 109.46665 * 180.02562 * 13 12 2 15 15 S 1.83689 * 110.81687 * 304.09107 * 14 13 12 16 16 C 1.83551 * 97.72319 * 157.41022 * 15 14 13 17 17 C 1.53274 * 107.35195 * 316.55382 * 16 15 14 18 18 S 1.81582 * 110.75340 * 29.44673 * 17 16 15 19 19 H 1.09004 * 109.47020 * 59.99780 * 1 2 3 20 20 H 1.08999 * 109.47448 * 179.97438 * 1 2 3 21 21 H 1.08999 * 109.47538 * 300.00417 * 1 2 3 22 22 H 0.96996 * 119.99754 * 179.97438 * 7 6 4 23 23 H 1.00898 * 110.99676 * 321.05383 * 12 2 1 24 24 H 1.08996 * 109.46996 * 60.00788 * 13 12 2 25 25 H 1.08998 * 109.47580 * 300.00442 * 13 12 2 26 26 H 1.09002 * 110.72121 * 180.70377 * 14 13 12 27 27 H 1.09001 * 109.86229 * 197.09959 * 16 15 14 28 28 H 1.09003 * 109.96429 * 76.05444 * 16 15 14 29 29 H 1.09009 * 109.22886 * 269.10319 * 17 16 15 30 30 H 1.08998 * 109.16299 * 149.75090 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6531 -1.5885 1.1314 6 6 1.6991 -0.2393 2.4828 7 7 0.9427 0.8297 2.6034 8 14 2.3212 -1.1204 4.0080 9 1 3.1463 -2.2870 3.6039 10 1 3.1465 -0.1874 4.8166 11 1 1.1658 -1.5866 4.8161 12 7 2.0197 -0.6926 -1.1994 13 6 2.0825 0.2226 -2.3468 14 6 2.5951 -0.5332 -3.5744 15 16 4.2199 -1.3166 -3.2272 16 6 4.1497 -2.6149 -4.5228 17 6 2.7372 -3.2095 -4.4981 18 16 1.5283 -1.9732 -3.9438 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3634 0.5139 0.8899 22 1 0.7081 1.1609 3.4844 23 1 1.4495 -1.4979 -1.4100 24 1 2.7589 1.0461 -2.1182 25 1 1.0871 0.6164 -2.5525 26 1 2.6616 0.1308 -4.4362 27 1 4.8830 -3.3923 -4.3083 28 1 4.3500 -2.1762 -5.5004 29 1 2.7180 -4.0608 -3.8176 30 1 2.4730 -3.5457 -5.5007 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703114010.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:34 Heat of formation + Delta-G solvation = -14.026862 kcal Electronic energy + Delta-G solvation = -12604.946389 eV Core-core repulsion = 10458.840955 eV Total energy + Delta-G solvation = -2146.105434 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 233.060 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.05286 -34.93839 -34.10881 -32.24997 -28.58514 -27.20970 -24.64773 -23.75539 -22.15921 -18.51810 -17.76334 -17.48956 -16.92971 -16.35624 -16.02468 -15.38956 -15.05528 -14.72088 -14.32537 -13.94285 -13.50349 -13.19188 -13.02431 -12.85227 -12.67701 -12.43023 -12.20356 -12.07081 -11.88048 -11.78235 -11.03119 -10.60505 -10.47252 -9.00219 -8.87675 -8.49207 -8.07613 -6.17741 0.30114 0.61623 0.87509 1.42584 1.44087 1.57141 1.77095 2.45972 3.20790 3.50978 3.59753 3.71202 3.88787 4.19799 4.47640 4.51456 4.57102 4.59273 4.70432 4.75772 4.89756 5.10888 5.40787 5.71519 5.83196 6.28981 6.66154 6.85060 6.98118 7.51978 8.98374 Molecular weight = 233.06amu Principal moments of inertia in cm(-1) A = 0.037815 B = 0.006929 C = 0.006488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.272822 B = 4039.889684 C = 4314.664711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.216 3.784 3 H 0.001 0.999 4 C -0.508 4.508 5 H 0.053 0.947 6 C 0.008 3.992 7 N -0.924 5.924 8 Si 0.960 3.040 9 H -0.270 1.270 10 H -0.282 1.282 11 H -0.279 1.279 12 N -0.671 5.671 13 C 0.086 3.914 14 C 0.016 3.984 15 S -0.268 6.268 16 C -0.074 4.074 17 C -0.072 4.072 18 S -0.293 6.293 19 H 0.023 0.977 20 H 0.029 0.971 21 H 0.062 0.938 22 H 0.260 0.740 23 H 0.339 0.661 24 H 0.075 0.925 25 H 0.041 0.959 26 H 0.134 0.866 27 H 0.140 0.860 28 H 0.114 0.886 29 H 0.104 0.896 30 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.979 -6.372 -16.146 17.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.108 3.892 3 H 0.019 0.981 4 C -0.547 4.547 5 H 0.071 0.929 6 C -0.190 4.190 7 N -0.565 5.565 8 Si 0.786 3.214 9 H -0.194 1.194 10 H -0.208 1.208 11 H -0.205 1.205 12 N -0.303 5.303 13 C -0.046 4.046 14 C -0.223 4.223 15 S -0.042 6.042 16 C -0.223 4.223 17 C -0.222 4.222 18 S -0.069 6.069 19 H 0.042 0.958 20 H 0.048 0.952 21 H 0.081 0.919 22 H 0.069 0.931 23 H 0.159 0.841 24 H 0.093 0.907 25 H 0.059 0.941 26 H 0.152 0.848 27 H 0.158 0.842 28 H 0.133 0.867 29 H 0.123 0.877 30 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 4.301 -6.033 -14.963 16.697 hybrid contribution -0.487 -0.019 -0.085 0.495 sum 3.813 -6.052 -15.048 16.661 Atomic orbital electron populations 1.22233 1.00138 0.99109 0.99933 1.18928 0.89857 0.92694 0.87741 0.98070 1.21447 1.30004 1.12258 0.90970 0.92883 1.25703 0.95548 0.95920 1.01834 1.70014 1.38251 1.24392 1.23842 0.85479 0.78064 0.78617 0.79286 1.19396 1.20780 1.20527 1.60765 1.58351 1.08847 1.02338 1.21505 0.98988 0.95056 0.89045 1.25955 0.93503 0.99236 1.03574 1.88659 1.25728 1.40952 1.48889 1.24238 0.98998 0.98832 1.00277 1.23960 0.92673 0.98662 1.06923 1.87258 1.20149 1.12261 1.87257 0.95847 0.95154 0.91887 0.93066 0.84074 0.90722 0.94120 0.84802 0.84222 0.86711 0.87696 0.84898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.71 8.94 71.98 0.64 -7.07 16 2 C 0.22 11.30 2.57 44.17 0.11 11.41 16 3 H 0.00 0.08 7.80 -2.39 -0.02 0.06 16 4 C -0.51 -29.17 8.84 25.60 0.23 -28.94 16 5 H 0.05 3.10 7.81 -2.91 -0.02 3.08 16 6 C 0.01 0.43 5.30 84.65 0.45 0.88 16 7 N -0.92 -54.45 11.32 21.45 0.24 -54.21 16 8 Si 0.96 45.22 29.54 68.60 2.03 47.25 16 9 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 10 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 11 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 12 N -0.67 -29.35 5.70 -495.44 -2.83 -32.18 16 13 C 0.09 3.11 5.37 86.30 0.46 3.57 16 14 C 0.02 0.46 3.96 71.98 0.29 0.75 16 15 S -0.27 -7.81 21.94 -46.49 -1.02 -8.83 16 16 C -0.07 -1.28 7.01 72.07 0.51 -0.77 16 17 C -0.07 -1.30 6.79 72.07 0.49 -0.81 16 18 S -0.29 -7.92 20.94 -46.49 -0.97 -8.90 16 19 H 0.02 1.02 7.45 -2.38 -0.02 1.01 16 20 H 0.03 1.45 8.13 -2.39 -0.02 1.43 16 21 H 0.06 3.48 6.07 -2.39 -0.01 3.46 16 22 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 23 H 0.34 14.65 7.06 -89.70 -0.63 14.02 16 24 H 0.07 2.81 8.05 -2.39 -0.02 2.79 16 25 H 0.04 1.46 7.44 -2.39 -0.02 1.45 16 26 H 0.13 3.18 8.14 -2.39 -0.02 3.16 16 27 H 0.14 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.13 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -64.08 268.39 1.11 -62.97 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: 0.49 Total: 14.87 kcal Atomic # 6 Polarization: -24.15 SS G_CDS: 3.18 Total: -20.98 kcal Atomic # 7 Polarization: -83.80 SS G_CDS: -2.58 Total: -86.39 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Atomic # 16 Polarization: -15.73 SS G_CDS: -1.99 Total: -17.72 kcal Total: -64.08 1.11 -62.97 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703114010.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.940 kcal (2) G-P(sol) polarization free energy of solvation -64.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds